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Volumn 76, Issue 20, 2010, Pages 6778-6786

Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach ∇

Author keywords

[No Author keywords available]

Indexed keywords

CONTAMINATION PLUME; DESULFOVIBRIO; DIRECT RESPONSE; ELECTRON DONORS; FLOW PATH; GEOBACTER; HIGH-THROUGHPUT METHOD; HYDRAULIC CONNECTIVITY; HYDRAULIC FLOW; HYDROCHEMICALS; INDICATOR SPECIES; INJECTION WELLS; INNER LOOPS; MASSIVELY PARALLEL SEQUENCING; MICROBIAL COMMUNITIES; OUTER LOOP; PYROSEQUENCING; RIDGE FIELDS; SEDIMENT SAMPLES; STATISTICAL ANALYSIS; SUBSTRATE INJECTION; SULFATE REDUCING BACTERIA; TENNESSEE; URANIUM CONCENTRATION;

EID: 77958549080     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01097-10     Document Type: Article
Times cited : (98)

References (49)
  • 2
    • 45749157434 scopus 로고    scopus 로고
    • DOE genomics: Applications to in situ subsurface bioremediation
    • Anderson, R. T. 2006. DOE genomics: applications to in situ subsurface bioremediation. Remediation J. 17:23-38.
    • (2006) Remediation J. , vol.17 , pp. 23-38
    • Anderson, R.T.1
  • 4
    • 17444392874 scopus 로고    scopus 로고
    • Anaerobic, nitrate-dependent oxidation of U(IV) oxide minerals by the chemolithoautotrophic bacterium Thiobacillus denitrificans
    • Beller, H. R. 2005. Anaerobic, nitrate-dependent oxidation of U(IV) oxide minerals by the chemolithoautotrophic bacterium Thiobacillus denitrificans. Appl. Environ. Microbiol. 71:2170-2174.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 2170-2174
    • Beller, H.R.1
  • 5
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Y. Hochberg. 1995. Controlling the False discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57:289-300.
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 9
    • 33745244776 scopus 로고    scopus 로고
    • Abundancebased similarity indices and their estimation when there are unseen species in samples
    • Chao, A., R. L. Chazdon, R. K. Colwell, and T. J. Shen. 2006. Abundancebased similarity indices and their estimation when there are unseen species in samples. Biometrics 62:361-371.
    • (2006) Biometrics , vol.62 , pp. 361-371
    • Chao, A.1    Chazdon, R.L.2    Colwell, R.K.3    Shen, T.J.4
  • 10
    • 0032733240 scopus 로고    scopus 로고
    • Geothrix fermentans gen nov., sp. nov., a novel Fe(III) -reducing bacterium from a hydrocarbon-contaminated aquifer
    • (Pt. 4)
    • Coates, J. D., D. J. Ellis, C. V. Gaw, and D. R. Lovley. 1999. Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. Int. J. Syst. Bacteriol. 49(Pt. 4):1615- 1622.
    • (1999) Int. J. Syst. Bacteriol , vol.49 , pp. 1615-1622
    • Coates, J.D.1    Ellis, D.J.2    Gaw, C.V.3    Lovley, D.R.4
  • 12
    • 0031284508 scopus 로고    scopus 로고
    • Species assemblages and indicator species: The need for a flexible asymmetrical approach
    • Dufrene, M., and P. Legendre. 1997. Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol. Monogr. 67: 345-366.
    • (1997) Ecol. Monogr , vol.67 , pp. 345-366
    • Dufrene, M.1    Legendre, P.2
  • 13
    • 0036742036 scopus 로고    scopus 로고
    • Multiple influences of nitrate on uranium solubility during bioremediation of uraniumcontaminated subsurface sediments
    • Finneran, K. T., M. E. Housewright, and D. R. Lovley. 2002. Multiple influences of nitrate on uranium solubility during bioremediation of uraniumcontaminated subsurface sediments. Environ. Microbiol. 4:510-516.
    • (2002) Environ. Microbiol , vol.4 , pp. 510-516
    • Finneran, K.T.1    Housewright, M.E.2    Lovley, R.D.3
  • 15
    • 51249175832 scopus 로고
    • Comparison of bacteria from deep subsurface sediment and adjacent groundwater
    • Hazen, T., L. Jiménez, G. López de Victoria, and C. Fliermans. 1991. Comparison of bacteria from deep subsurface sediment and adjacent groundwater. Microb. Ecol. 22:293-304.
    • (1991) Microb. Ecol. , vol.22 , pp. 293-304
    • Hazen, T.1    Jiménez, L.2    López De Victoria, G.3    Fliermans, C.4
  • 16
    • 28244484693 scopus 로고    scopus 로고
    • Developments in bioremediation of soils and sediments polluted with metals and radionuclides. 2. Field research on bioremediation of metals and radionuclides
    • Hazen, T. C., and H. H. Tabak. 2005. Developments in bioremediation of soils and sediments polluted with metals and radionuclides. 2. Field research on bioremediation of metals and radionuclides. Rev. Environ. Sci. Biotechnol. 4:157-183.
    • (2005) Rev. Environ. Sci. Biotechnol , vol.4 , pp. 157-183
    • Hazen, T.C.1    Tabak, H.H.2
  • 18
    • 0036249528 scopus 로고    scopus 로고
    • Enrichment of members of the family geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments
    • Holmes, D. E., K. T. Finneran, R. A. O'Neil, and D. R. Lovley. 2002. Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments. Appl. Environ. Microbiol. 68:2300-2306.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 2300-2306
    • Holmes, D.E.1    Finneran, K.T.2    O'Neil, R.A.3    Lovley, R.D.4
  • 24
    • 35748954014 scopus 로고    scopus 로고
    • Prokaryotic taxonomy and phylogeny in the genomic era: Advancements and challenges ahead
    • Konstantinidis, K. T., and J. M. Tiedje. 2007. Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr. Opin. Microbiol. 10:504-509.
    • (2007) Curr. Opin. Microbiol , vol.10 , pp. 504-509
    • Konstantinidis, K.T.1    Tiedje, M.J.2
  • 28
    • 0037398448 scopus 로고    scopus 로고
    • Acanthamoeba spp. as agents of disease in humans
    • Marciano-Cabral, F., and G. Cabral. 2003. Acanthamoeba spp. as agents of disease in humans. Clin. Microbiol. Rev. 16:273-307.
    • (2003) Clin. Microbiol. Rev. , vol.16 , pp. 273-307
    • Marciano-Cabral, F.1    Cabral, G.2
  • 30
    • 0034660186 scopus 로고    scopus 로고
    • Potential for nonenzymatic reduction of Fe(III) via electron shuttling in subsurface sediments
    • Nevin, K. P., and D. R. Lovley. 2000. Potential for nonenzymatic reduction of Fe(III) via electron shuttling in subsurface sediments. Environ. Sci. Technol. 34:2472-2478.
    • (2000) Environ. Sci. Technol , vol.34 , pp. 2472-2478
    • Nevin, K.P.1    Lovley, R.D.2
  • 31
    • 4143121402 scopus 로고    scopus 로고
    • Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate
    • North, N. N., S. L. Dollhopf, L. Petrie, J. D. Istok, D. L. Balkwill, and J. E. Kostka. 2004. Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate. Appl. Environ. Microbiol. 70:4911-4920.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 4911-4920
    • North, N.N.1    Dollhopf, S.L.2    Petrie, L.3    Istok, J.D.4    Balkwill, D.L.5    Kostka, E.J.6
  • 32
    • 33745711973 scopus 로고    scopus 로고
    • Heterogeneous response to biostimulation for U(VI) reduction in replicated sediment microcosms
    • Nyman, J. L., T. L. Marsh, M. A. Ginder-Vogel, M. Gentile, S. Fendorf, and C. Criddle. 2006. Heterogeneous response to biostimulation for U(VI) reduction in replicated sediment microcosms. Biodegradation 17: 303-316.
    • (2006) Biodegradation , vol.17 , pp. 303-316
    • Nyman, J.L.1    Marsh, T.L.2    Ginder-Vogel, M.A.3    Gentile, M.4    Fendorf, S.5    Criddle, C.6
  • 34
    • 77949484695 scopus 로고    scopus 로고
    • Labdsv: Ordination and multivariate analysis for ecology
    • Roberts, D. W. 2007. Labdsv: ordination and multivariate analysis for ecology. R package v1.3-1. http://cran.r-project.org/web/packages/labdsv/index. html.
    • (2007) R package v1.3-1
    • Roberts, D.W.1
  • 35
    • 0035147535 scopus 로고    scopus 로고
    • Desulfosporosinus meridiei sp. nov., a spore-forming sulfate-reducing bacterium isolated from gasolene-contaminated groundwater
    • Robertson, W. J., J. P. Bowman, P. D. Franzmann, and B. J. Mee. 2001. Desulfosporosinus meridiei sp. nov., a spore-forming sulfate-reducing bacterium isolated from gasolene-contaminated groundwater. Int. J. Syst. Evol. Microbiol. 51:133-140.
    • (2001) Int. J. Syst. Evol. Microbiol , vol.51 , pp. 133-140
    • Robertson, W.J.1    Bowman, J.P.2    Franzmann, P.D.3    Mee, J.B.4
  • 36
    • 36249021315 scopus 로고    scopus 로고
    • Genome-wide experimental determination of barriers to horizontal gene transfer
    • Sorek, R., Y. Zhu, C. J. Creevey, M. P. Francino, P. Bork, and E. M. Rubin. 2007. Genome-wide experimental determination of barriers to horizontal gene transfer. Science 318:1449-1452.
    • (2007) Science , vol.318 , pp. 1449-1452
    • Sorek, R.1    Zhu, Y.2    Creevey, C.J.3    Francino, M.P.4    Bork, P.5    Rubin, E.M.6
  • 37
    • 34547810329 scopus 로고    scopus 로고
    • Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer
    • Spain, A. M., A. D. Peacock, J. D. Istok, M. S. Elshahed, F. Z. Najar, B. A. Roe, D. C. White, and L. R. Krumholz. 2007. Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer. Appl. Environ. Microbiol. 73:4892-4904.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 4892-4904
    • Spain, A.M.1    Peacock, A.D.2    Istok, J.D.3    Elshahed, M.S.4    Najar, F.Z.5    Roe, B.A.6    White, D.C.7    Krumholz, R.L.8
  • 38
    • 1142273091 scopus 로고    scopus 로고
    • Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: A unified approach
    • Storey, J., J. Taylor, and D. Siegmund. 2004. Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach. J. R. Statist. Soc. B 66:187-205.
    • (2004) J. R. Statist. Soc. B , vol.66 , pp. 187-205
    • Storey, J.1    Taylor, J.2    Siegmund, D.3
  • 39
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J., and R. Tibshirani. 2003. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. U. S. A. 100:9440-9445.
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 9440-9445
    • Storey, J.1    Tibshirani, R.2
  • 40
    • 0344837851 scopus 로고    scopus 로고
    • Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment
    • Suzuki, Y., S. D. Kelly, K. M. Kemner, and J. F. Banfield. 2003. Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment. Appl. Environ. Microbiol. 69:1337-1346.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 1337-1346
    • Suzuki, Y.1    Kelly, S.D.2    Kemner, K.M.3    Banfield, F.J.4
  • 44
    • 34548293679 scopus 로고    scopus 로고
    • Naive bayesianclassifier for rapid assignment of rrna sequences into the new bacterial taxonomy
    • Wang, Q., G. M. Garrity, J. M. Tiedje, and J. R. Cole. 2007. Naive Bayesianclassifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73:5261-5267.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, R.J.4


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