메뉴 건너뛰기




Volumn 11, Issue 9, 2010, Pages 3138-3148

Rapid and accurate detection of plant miRNAs by liquid northern hybridization

Author keywords

Liquid Northern hybridization; miRNA; Oligonucleotide probes; Oryza sativa; Small RNA

Indexed keywords

FLUORESCENT DYE; MICRORNA; PLANT RNA;

EID: 77958500801     PISSN: None     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms11093138     Document Type: Article
Times cited : (17)

References (28)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D.P. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 2004, 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis, B.P.; Burge, C.B.; Bartel, D.P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120, 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 3
    • 34249094273 scopus 로고    scopus 로고
    • Expanding RNA physiology: MicroRNAs in a unicellular organism
    • Siomi, H.; Siomi, M.C. Expanding RNA physiology: microRNAs in a unicellular organism. Genes Dev. 2007, 21, 1153-1156.
    • (2007) Genes Dev. , vol.21 , pp. 1153-1156
    • Siomi, H.1    Siomi, M.C.2
  • 5
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • Mallory, A.C.; Vaucheret, H. Functions of microRNAs and related small RNAs in plants. Nat. Genet. 2006, 38, S31-S36.
    • (2006) Nat. Genet. , vol.38
    • Mallory, A.C.1    Vaucheret, H.2
  • 6
    • 55049139974 scopus 로고    scopus 로고
    • The role of microRNAs and other endogenous small RNAs in plant stress responses
    • Shukla, L.I.; Chinnusamy, V.; Sunkar, R. The role of microRNAs and other endogenous small RNAs in plant stress responses. Biochim. Biophys. Acta 2008, 1779, 743-748.
    • (2008) Biochim. Biophys. Acta , vol.1779 , pp. 743-748
    • Shukla, L.I.1    Chinnusamy, V.2    Sunkar, R.3
  • 7
    • 34347263491 scopus 로고    scopus 로고
    • Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
    • Sunkar, R.; Chinnusamy, V.; Zhu, J.; Zhu, J.K. Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci. 2007, 12, 301-309.
    • (2007) Trends Plant Sci. , vol.12 , pp. 301-309
    • Sunkar, R.1    Chinnusamy, V.2    Zhu, J.3    Zhu, J.K.4
  • 8
    • 29144527030 scopus 로고    scopus 로고
    • Plant microRNA: A small regulatory molecule with big impact
    • Zhang, B.; Pan, X.; Cobb, G.P.; Anderson, T.A. Plant microRNA: A small regulatory molecule with big impact. Dev. Biol. 2006, 289, 3-16.
    • (2006) Dev. Biol. , vol.289 , pp. 3-16
    • Zhang, B.1    Pan, X.2    Cobb, G.P.3    Anderson, T.A.4
  • 9
    • 67349171931 scopus 로고    scopus 로고
    • MicroRNA (miR396) negatively regulates expression of ceramidase-like genes in Arabidopsis
    • Liu, D.; Yu, D. MicroRNA (miR396) negatively regulates expression of ceramidase-like genes in Arabidopsis. Prog. Nat. Sci. 2009, 19, 781-785.
    • (2009) Prog. Nat. Sci. , vol.19 , pp. 781-785
    • Liu, D.1    Yu, D.2
  • 10
    • 33749059160 scopus 로고    scopus 로고
    • miRBase: The microRNA sequence database
    • Griffiths-Jones, S. miRBase: The microRNA sequence database. Methods Mol. Biol. 2006, 342, 129-138.
    • (2006) Methods Mol. Biol. , vol.342 , pp. 129-138
    • Griffiths-Jones, S.1
  • 11
    • 0037009364 scopus 로고    scopus 로고
    • MicroRNA maturation: Stepwise processing and subcellular localization
    • Lee, Y.; Jeon, K.; Lee, J.T.; Kim, S.; Kim, V.N. MicroRNA maturation: Stepwise processing and subcellular localization. EMBO J. 2002, 21, 4663-4670.
    • (2002) EMBO J. , vol.21 , pp. 4663-4670
    • Lee, Y.1    Jeon, K.2    Lee, J.T.3    Kim, S.4    Kim, V.N.5
  • 12
    • 61449196773 scopus 로고    scopus 로고
    • Northern blot analysis for detection and quantification of RNA in pancreatic cancer cells and tissues
    • Streit, S.; Michalski, C.W.; Erkan, M.; Kleeff, J.; Friess, H. Northern blot analysis for detection and quantification of RNA in pancreatic cancer cells and tissues. Nat. Protoc. 2009, 4, 37-43.
    • (2009) Nat. Protoc. , vol.4 , pp. 37-43
    • Streit, S.1    Michalski, C.W.2    Erkan, M.3    Kleeff, J.4    Friess, H.5
  • 13
    • 0027751663 scopus 로고
    • The C.elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee, R.C.; Feinbaum, R.L.; Ambros, V. The C.elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75, 843-854.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 17
    • 34548682763 scopus 로고    scopus 로고
    • Analysis of microRNA expression by in situ hybridization with RNA oligonucleotide probe
    • Thompson, R.C.; Deo, M.; Turner, D.L. Analysis of microRNA expression by in situ hybridization with RNA oligonucleotide probe. Methods 2007, 43, 153-161.
    • (2007) Methods , vol.43 , pp. 153-161
    • Thompson, R.C.1    Deo, M.2    Turner, D.L.3
  • 18
    • 0019061278 scopus 로고
    • Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose
    • Thomas, P.S. Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose. Proc. Natl. Acad. Sci. USA 1980, 77, 5201-5205.
    • (1980) Proc. Natl. Acad. Sci. USA , vol.77 , pp. 5201-5205
    • Thomas, P.S.1
  • 19
    • 48249086954 scopus 로고    scopus 로고
    • A RNA isolation method suitable for a wide range of materials
    • Chun, J.; Zheng, Y.F.; Wang, S.H.; Chen, F. A RNA isolation method suitable for a wide range of materials. Prog. Biochem. Biophys. 2008, 35, 591-597.
    • (2008) Prog. Biochem. Biophys. , vol.35 , pp. 591-597
    • Chun, J.1    Zheng, Y.F.2    Wang, S.H.3    Chen, F.4
  • 20
    • 22144464033 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from rice
    • Sunkar, R.; Girke, T.; Jain, P.K.; Zhu, J.K. Cloning and characterization of microRNAs from rice. Plant Cell 2005, 17, 1397-1411.
    • (2005) Plant Cell , vol.17 , pp. 1397-1411
    • Sunkar, R.1    Girke, T.2    Jain, P.K.3    Zhu, J.K.4
  • 22
    • 65049087610 scopus 로고    scopus 로고
    • Simultaneous visual detection of single-nucleotide variations in tuna DNA using DNA/RNA chimeric probes and ribonuclease A
    • Kitaoka, M.; Ichinose, H.; Goto, M. Simultaneous visual detection of single-nucleotide variations in tuna DNA using DNA/RNA chimeric probes and ribonuclease A. Anal. Biochem. 2009, 389, 6-11.
    • (2009) Anal. Biochem. , vol.389 , pp. 6-11
    • Kitaoka, M.1    Ichinose, H.2    Goto, M.3
  • 24
    • 29244490062 scopus 로고    scopus 로고
    • Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
    • Borsani, O.; Zhu, J.; Verslues, P.E.; Sunkar, R.; Zhu, J.K. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 2005, 123, 1279-1291.
    • (2005) Cell , vol.123 , pp. 1279-1291
    • Borsani, O.1    Zhu, J.2    Verslues, P.E.3    Sunkar, R.4    Zhu, J.K.5
  • 25
    • 43049096410 scopus 로고    scopus 로고
    • The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members
    • Farazi, T.A.; Jurane, S.A.; Tuschl, T. The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members. Development 2008, 135, 1201-1214.
    • (2008) Development , vol.135 , pp. 1201-1214
    • Farazi, T.A.1    Jurane, S.A.2    Tuschl, T.3
  • 26
    • 33745336617 scopus 로고    scopus 로고
    • A germline specific class of small RNAs binds mammalian Piwi proteins
    • Girard, A.; Sachidanandam, R.; Hannon, G.J.; Carmell, M.A. A germline specific class of small RNAs binds mammalian Piwi proteins. Nature 2006, 442, 199-202.
    • (2006) Nature , vol.442 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.J.3    Carmell, M.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.