The complete mitochondrial genome of Caprella scaura (Crustacea, Amphipoda, Caprellidea), with emphasis on the unique gene order pattern and duplicated control region

Mitochondrial DNA

Volumn 21, Issue 5, 2010, Pages 183-190

  Ito, Atsushi ^a   Aoki, Masakazu N ^a   Yokobori, Shin Ichi ^b   Wada, Hiroshi ^a  

^a UNIVERSITY OF TSUKUBA   (Japan)

^b TOKYO UNIVERSITY OF PHARMACY AND LIFE SCIENCES   (Japan)

Author keywords

Amphipoda; Crustacea; Duplicate control regions; Entire mitochondrial genome; Gene rearrangement

Indexed keywords

ADENINE; RIBOSOME RNA; THYMINE; TRANSFER RNA;

AMPHIPODA; ARTICLE; CAPRELLA SCAURA; CAPRELLIDEA; CRUSTACEA; GAMMARIDEA; GENE CONTROL; GENE DUPLICATION; GENE ORDER; GENE REARRANGEMENT; GENE STRUCTURE; MITOCHONDRIAL GENOME; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

AMPHIPODA; ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; DNA, MITOCHONDRIAL; GENE DUPLICATION; GENE EXPRESSION REGULATION; GENE ORDER; GENE REARRANGEMENT; GENES, MITOCHONDRIAL; GENOME, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, TRANSFER; SEQUENCE ANALYSIS, DNA;

AMPHIPODA; CAPRELLA SCAURA; CAPRELLIDA; CAPRELLIDEA; CRUSTACEA; GAMMARIDAE; GAMMARIDEA;

EID: 77958470959     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/19401736.2010.517834     Document Type: Article

References (28)

1. Bauza-Ribot MM, Jaume D, Juan C, Pons J. 2009. The complete mitochondrial genome of the subterranean crustacean Metacrangonyx longipes (Amphipoda): A unique gene order and extremely short control region. Mitochondrial DNA 20:88-99.
2. Boore JL, Collins TM, Stanton D, Daehler LL, Brown WM. 1995. Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature 376:163-165.
3. Boore JL, Lavrov DV, Brown WM. 1998. Gene translocation links insects and crustaceans. Nature 392:667-668.
4. Cook CE. 2005. The complete mitochondrial genome of the stomatopod crustacean Squilla mantis. BMC Genomics 6:105.
5. Cook CE, Yue Q, Akam M. 2005. Mitochondrial genomes suggest that hexapods and crustaceans are mutually paraphyletic. Proc R Soc Lond Ser B Biol Sci 272:1295-1304.
6. Crozier RH, Crozier YC. 1993. The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization. Genetics 133:97-117.
7. France SC. 1993. Geographic-variation among 3 isolated populations of the hadal amphipod Hirondellea gigas (Crustacea, Amphipoda, Lysianassoidea). Mar Ecol Progr Ser 92: 277-287.
8. Hickerson MJ, Cunnigham CW. 2005. Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura). Mol Biol Evol 17:639-644.
9. Ito A, Wada H, Aoki MN. 2008. Phylogenetic analysis of caprellid and corophioid amphipods (Crustacea) based on the 18S rRNA gene, with special emphasis on the phylogenetic position of Phtisicidae. Biol Bull 214:176-183.
10. Kilpert F, Podsiadlowski L. 2006. The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features. BMC Genomics 7:241.
11. Kilpert F, Podsiadlowski L. 2010. The mitochondrial genome of the Japanese skeleton shrimp Caprella mutica (Amphipoda: Caprellidea) reveals a unique gene order and shanred apomorphic translocations with Gammaridea. Mitochondrial DNA 21: 77-86.
12. Kumazawa Y, Ota H, Nishida M, Ozawa T. 1998. The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. Genetics 150:313-329.
13. Marcade I, Cordaux R, Doublet V, Debenest C, Bouchon D, Raimond R. 2007. Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura). J Mol Evol 65:651-659.
14. Miller AD, Nguyen TTT, Burridge CP, Austin CM. 2004. Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): A novel gene order revealed. Gene 331:65-72.
15. Miller AD,Murphy NP, Burridge CP, Austin CM. 2005. Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae). Mar Biotechnol 7:339-349.
16. Ogoh K, Ohmiya Y. 2004. Complete mitochondrial DNA sequence of the sea-firefly, Vargula hilgendorfii (Crustacea, Ostracoda) with duplicate control regions. Gene 327:131-139.
17. Ojala D, Montoya J, Attardi G. 1981. tRNA punctuation model of RNA processing in human mitochondria. Nature 290: 470-474.
18. Okimoto R, Wolstenholme DR. 1990. A set of tRNAs that lack either the T psi C arm or the dihydrouridine arm: Towards a minimal tRNA adaptor. EMBO J 9:3405-3411.
19. Podsiadlowski L, Bartolomaeus T. 2006. Major rearrangements characterize the mitochondrial genome of the isopod Idotea baltica (Crustacea: Peracarida). Mol Phylogenet Evol 40: 893-899.
20. Segawa RD, Aotsuka T. 2005. The mitochondrial genome of the Japanese freshwater crab, Geothelphusa dehaani (Crustacea: Brachyura): Evidence for its evolution via gene duplication. Gene 355:28-39.
21. Shao RF, Barker SC. 2003. The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): Convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes.Mol Biol Evol 20: 362-370.
22. Shao RF, Barker SC, Mitani H, Aoki Y, Fukunaga M. 2005. Evolution of duplicate control regions in the mitochondrial genomes of metazoa: A case study with Australasian Ixodes ticks. Mol Biol Evol 20:362-370.
23. Sun H, Zhou K, Song D. 2005. Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements. Gene 249:207-217.
24. Wilson K, Cahill V, Ballment E, Benzie J. 2000. The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: Are malacostracan crustaceans more closely related to insects than to branchiopods? Mol Biol Evol 17:863-874.
25. Yamaguchi MM, Miya MU, Nishida M. 2002. Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene 295:89-96.
26. Yokobori S, Pääbo S. 1995. Transfer RNA editing in land snail mitochondria. Proc Natl Acad Sci USA 92:10432-10435.
27. Yokobori S, Suzuki T,Watanabe K. 2001. Genetic code variations in mitochondria: tRNA as a major determinant of genetic code plasticity. J Mol Evol 53:314-326.
28. Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406-3415.