SBML2TikZ: Supporting the SBML render extension in LATEX

Bioinformatics

Volumn 26, Issue 21, 2010, Pages 2794-2795

  Shen, Si Yuan ^a   Bergmann, Frank ^a   Sauro, Herbert M ^a  

^a University of Washington   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; COMPUTER GRAPHICS; COMPUTER PROGRAM; FACTUAL DATABASE; INFORMATION RETRIEVAL; INTERNET; SYSTEMS BIOLOGY;

COMPUTER GRAPHICS; DATABASES, FACTUAL; INFORMATION STORAGE AND RETRIEVAL; INTERNET; MODELS, BIOLOGICAL; SOFTWARE; SYSTEMS BIOLOGY;

EID: 77958468806     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq512     Document Type: Article

References (8)

1. Alves,R. et al. (2006) Tools for kinetic modeling of biochemical networks. Nat. Biotechnol., 24, 667-672.
2. Bergmann,F.T. and Sauro,H. (2006) SBW - a modular framework for systems biology. In Proceedings of the 38th Conference onWinter Simulation, SeriesWSC '06,Winter Simulation Conference, pp. 1637-1645.
3. Funahashi,A. et al. (2006) CellDesigner: a modeling tool for biochemical networks. In Proceedings for the 38th Conference onWinter Simulation, Series WSC '06,Winter Simulation Conference, pp. 1707-1712.
4. Gauges,R. et al. (2009) Complementing layout information with render information in SBML files. University of Heidelberg. Available at http://otto.bioquant.uniheidelberg.de/sbml/ (last accessed date September 12, 2010).
5. Hucka,M. et al. (2003) The systems biology markup language (SBML): a medium for presentation and exchange of biochemical network models. Bioinformatics, 19, 524-531.
6. Novère,L.N. et al. (2009) The systems biology graphical notation. Nat. Biotechnol., 19, 735-741.
7. Sauro,H. et al. (2003) Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration. OMICS, 7, 355-372.
8. Villéger,A. et al. (2010) Arcadia: a visualization tool for metabolic pathways. Bioinformatics, 26, 1470-1471.