Identification and evaluation of a new nucleic acid amplification test target for specific detection of Mycobacterium tuberculosis

Clinical Chemistry and Laboratory Medicine

Volumn 48, Issue 10, 2010, Pages 1501-1505

  Qin, Lianhua ^a   Zheng, Ruijuan ^a   Fan, Chao ^a   Cai, Jiangli ^a   Liu, Zhonghua ^a   Wang, Jie ^a   Lu, Junmei ^a   Jin, Ruiliang ^a   Yang, Hua ^a   Cui, Zhenling ^a   Feng, Yonghong ^a   Hu, Zhongyi ^a  

^a TONGJI UNIVERSITY SCHOOL OF MEDICINE   (China)

Author keywords

inter simple sequence repeats (ISSR) genotyping; Mycobacterium tuberculosis; nucleic acid amplification (NAA) test target; sequence characterized amplified region (SCAR) markers; specific identification

Indexed keywords

BCG VACCINE; OLIGONUCLEOTIDE; RNA 16S;

AMPLICON; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM DETECTION; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; EARLY DIAGNOSIS; EVALUATION; GENE AMPLIFICATION; GENE SEQUENCE; GENOTYPE; MARKER GENE; MYCOBACTERIUM AFRICANUM; MYCOBACTERIUM ARUPENSE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEIC ACID AMPLIFICATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TUBERCULOSIS;

GENOTYPE; HUMANS; MYCOBACTERIUM TUBERCULOSIS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; RNA, RIBOSOMAL, 16S; SENSITIVITY AND SPECIFICITY; TUBERCULOSIS;

CORYNEBACTERINEAE; MYCOBACTERIUM; MYCOBACTERIUM AFRICANUM; MYCOBACTERIUM ARUPENSE; MYCOBACTERIUM BOVIS; MYCOBACTERIUM TUBERCULOSIS; MYCOBACTERIUM TUBERCULOSIS COMPLEX;

EID: 77958165658     PISSN: 14346621     EISSN: 14374331     Source Type: Journal    
DOI: 10.1515/CCLM.2010.296     Document Type: Article

References (20)

1. Greco S, Girardi E, Navarra A, Saltini C. Current evidence on diagnostic accuracy of commercially based nucleic acid amplification tests for the diagnosis of pulmonary tuberculosis. Thorax 2006;61:783-90.
2. Beige J, Lokies J, Schaberg T, Finckh U, Fischer M, Mauch H, et al. Clinical evaluation of a Mycobacterium tuberculosis PCR assay. J Clin Microbiol 1995;33:90-5.
3. Johansen IS, Lundgren B, Tabak F, Petrini B, Hosoglu S, Saltoglu N, et al. Improved sensitivity of nucleic acid amplification for rapid diagnosis of tuberculous meningitis. J Clin Microbiol 2004;42:3036-40.
4. Schutten M, Niesters HG. Standardization and quality control in molecular diagnostics. Expert Rev Mol Diagn 2001;1:129-31.
5. Glennon M, Cormican M. Detection and diagnosis of mycobacterial pathogens using PCR. Expert Rev Mol Diagn 2001;1:163-74.
6. Huard RC, de Oliveira Lazzarini LC, Butler WR, van Soolingen D, Ho JL. A PCR-based method to differentiate the subspecies of the Mycobacterium tuberculosis complex on the basis of genomic deletions. J Clin Microbiol 2003;41:1637-50.
7. Richardson ET, Samson D, Banaei N. Rapid identification of Mycobacterium tuberculosis and vontuberculous mycobacteria by multiplex, real-time PCR. J Clin Microbiol 2009;47:1497-502.
8. Beqaj SH, Flesher R, Walker GR, Smith SA. Use of the realtime PCR assay in conjunction with MagNA Pure for the detection of mycobacterial DNA from fixed specimens. Diagn Mol Pathol 2007;16:169-73.
9. Lachnik J, Ackermann B, Bohrssen A, Maass S, Diephaus C, Puncken A, et al. Rapid cycle PCR and fluorimetry for detection of mycobacteria. J Clin Microbiol 2002;40:3364-73.
10. Chimara E, Ferrazoli L, Ueky SY, Martins MC, Durham AM, Arbeit RD, et al. Reliable identification of mycobacterial species by PCR-restriction enzyme analysis (PRA)-hsp65 in a reference laboratory and elaboration of a sequence-based extended algorithm of PRA-hsp65 patterns. BMC Microbiol 2008;8:48.
11. Weil A, Plikaytis BB, Butler WR, Woodley CL, Shinnick TM. The mpt40 gene is not present in all strains of Mycobacterium tuberculosis. J Clin Microbiol 1996;34:2309-11.
12. Das S, Paramasivan CN, Lowrie DB, Prabhakar R, Narayanan PR. IS6110 restriction fragment length polymorphism typing of clinical isolates of Mycobacterium tuberculosis from patients with pulmonary tuberculosis in Madras, south India. Tuber Lung Dis 1995;76:550-4.
13. Wiid IJ, Werely C, Beyers N, Donald P, van Helden PD. Oligonucleotide (GTG) 5 as a marker for Mycobacterium tuberculosis strain identification. J Clin Microbiol 1994;32:1318-21.
14. Cilliers FJ, Warren RM, Hauman JH, Wiid IJ, van Helden PD. Oligonucleotide (GTG) 5 as an epidemiological tool in the study of nontuberculous mycobacteria. J Clin Microbiol 1997;35:1545-9.
15. Thierry D, Cave MD, Eisenach KD, Crawford JT, Bates JH, Gicquel B, et al. IS6110, an ISlike element of Mycobacterium tuberculosis complex. Nucleic Acids Res 1990;18:188.
16. Woese CR, Magrum LJ, Gupta R, Siegel RB, Stahl DA, Kop J, et al. Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence. Nucleic Acids Res 1980;8:2275-93.
17. Patel S, Yates M, Saunders AN. PCR-enzyme-linked immunosorbent assay and partial rRNA gene sequencing: a rational approach to identifying mycobacteria. J Clin Microbiol 1997;35:2375-80.
18. Pai M, Flores LL, Pai N, Hubbard A, Riley LW, Colford JM Jr. Diagnostic accuracy of nucleic acid amplification tests for tuberculous meningitis: a systematic review and meta-analysis. Lancet Infect Dis 2003;3:633-43.
19. Pai M, Flores LL, Hubbard A, Riley LW, Colford JM Jr. Nucleic acid amplification tests in the diagnosis of tuberculous pleuritis: a systematic review and meta-analysis. BMC Infect Dis 2004;4:6.
20. Flores LL, Pai M, Colford JM Jr, Riley LW. In-house nucleic acid amplification tests for the detection of Mycobacterium tuberculosis in sputum specimens: meta-analysis and metaregression. BMC Microbiol 2005;5:55.