Expanding the modern synthesis

Comptes Rendus - Biologies

Volumn 333, Issue 10, 2010, Pages 701-709

  Wallace, Rodrick ^a  

^a NEW YORK STATE PSYCHIATRIC INSTITUTE   (United States)

Author keywords

Endosymbiosis; Environment; Evolution; Genetics; Information theory; Modern synthesis; Resilience

Indexed keywords

COEVOLUTION; ECOSYSTEM RESILIENCE; ENDOSYMBIONT; ENVIRONMENTAL FACTOR; EVOLUTIONARY THEORY; GENE EXPRESSION; GENETIC VARIATION; HERITABILITY; INFORMATION SYSTEM; MUTATION; NUMERICAL METHOD; SYMBIOSIS;

ARTICLE; ENDOSYMBIOSIS; EVOLUTION; GENE EXPRESSION; GENETIC VARIABILITY; HEREDITY; HUMAN; INTERPERSONAL COMMUNICATION; MATHEMATICAL ANALYSIS; MUTATION; NONHUMAN; POPULATION GENETICS; REPRODUCTION;

BIOLOGICAL EVOLUTION; ECOSYSTEM; ENVIRONMENT; GENETIC VARIATION; HEREDITY; MODELS, BIOLOGICAL; MODELS, THEORETICAL; MUTATION; REPRODUCTION; SELECTION, GENETIC;

EID: 77958161518     PISSN: 16310691     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.crvi.2010.08.003     Document Type: Article

References (41)

1. R. Lewontin, Not so natural selection, New York Review of Books Online, 2010.
2. J. Fodor, M. Piattelli-Palmarini, What Darwin got wrong, Farrar, Straus, and Giroux, New York, 2010.
3. W. Ewens Mathematical population genetics 2004 Springer New York
4. F. Odling-Smee, K. Laland, and M. Feldman Niche Construction:the neglected process in evolution 2003 Princeton University Press NJ
5. R. Wallace, and D. Wallace Punctuated equilibrium in statistical models of generalized coevolutionary resilience: how sudden ecosystem transitions can entrain both phenotype expression and Darwinian selection Transactions on Computational Systems Biology IX LNBI 5121 2008 23 85
6. R. Wallace, D. Wallace, Code, context, and epigenetic catalysis in gene expression, Transactions on Computational Systems Biology XI, LNBI 5750 (2009) 283-334.
7. R. Wallace, D. Wallace, and R.G. Wallace Farming human pathogens: ecological resilience and evolutionary process 2009 Springer New York
8. C. Holling Resilience and stability of ecological systems Annual Reviews of Ecological Systematics 4 1973 1 23
9. C. Holling, Cross-scale morphology, geometry, and dynamics of ecosystems, Ecological Monographs 62 (1992) 447-502.
10. R. Wallace, and R.G. Wallace On the spectrum of prebiotic chemical systems: an information-theoretic treatment of Eigen's Paradox Origins of Life and Evolution of Bioshperes 38 2008 419 455
11. F. Sun, and G. Ceataeno-Anolles Evolutionary patterns in the sequence and structure of transfer RNA: a window into early translation and the genetic code PLOS one 3 2008 32799
12. S. Rodin, and A. Rodin On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases Heredity 100 2008 341 355
13. G. Witzany Noncoding RNAs: persistent viral agents as modular tools for cellular needs Annals of the New York Academy of Sciences 1178 2009 244 267
14. E. Koonin, T. Senkevich, V. Dolja, The ancient virus world and evolution of cells, Biology Direct (2006), doi:10.1186/1745-6150-1-29.
15. K. Vetsigian, C. Wose, and N. Goldenfield Collective evolution and the genetic code Proceedings of the National Academy of Sciences 103 2006 10696 10701
16. T. Tlusty A model for the emergence of the genetic code as a transition in a noisy information channel Journal of Theoretical Biology 249 2007 331 342
17. T. Tlusty Casting polymer nets to optimize noisy molecular codes Proceedings of the National Academy of Sciences 105 2008 8238 8243
18. R. Wallace, Metabolic constraints on the evolution of genetic codes, http://www.precedings.nature.com/documents/4120/version/3, 2010.
19. C. Beck, F. Schlogl, Thermodynamics of Chaotic Systems, Cambridge University Press, Cambridge, UK, 1993.
20. E. Pielou Mathematical ecology 1977 Wiley New York
21. S. Levin Ecology in theory and application S. Levin, T. Hallam, L. Gross, Applied mathematical ecology, biomathematics texts 18 1989 Springer New York
22. A. Khinchin Mathematical foundations of information theory 1957 Dover New York
23. R. Ash Information theory 1990 Dover New York
24. T. Cover, and J. Thomas Elements of information theory 1991 Wiley New York
25. C. Adami, C. Ofria, and T. Collier Evolution of biological complexity Proceedings of the National Academy of Sciences 97 2000 4463 4468
26. C. Ofria, C. Adami, and T. Collier Selective pressures on genomes in molecular evolution Journal of Theoretical Biology 222 2003 477 483
27. C. Adami, and N. Cerf Physical complexity of symbolic sequences Physica D 137 2000 62 69
28. I. Cohen, D. Harel, Explaining a complex living system: dynamics, multi-scaling and emergence, Journal of the Royal Society Interface 4 (2007) 175-182.
29. S. O'Nuallain Code and context in gene expression, cognition, and consciousness, Chapter 15 M. Barbiere, The codes of life: the rules of macroevolution 2008 Springer New York 347 356
30. H. Atlan, I. Cohen, Immune information, self-organization and meaning, International Immunology 10 (1998) 711-717.
31. R. Wallace Consciousness: a mathematical treatment of the global neuronal workspace model 2005 Springer New York
32. U. Diekmann, R. Law, The dynamical theory of coevolution: a derivation from stochastic ecological processes, Journal of Mathematical Biology 34 (1996) 579-612.
33. C. Wymer Structural nonlinear continuous-time models in econometrics Macroeconomic Dynamics 1 1997 518 548
34. J.F. Glazebrook, and R. Wallace Rate distortion manifolds as models for cognitive information Informatica 33 2009 309 345
35. R. Zhu, A. Rebirio, D. Salahub, and S. Kauffmann Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models Journal of Theoretical Biology 246 2007 725 745
36. N. Champagnat, R. Ferriere, and S. Meleard Unifying evolutionary dynamics: from individual stochastic processes to macroscopic models Theoretical Population Biology 69 2006 297 321
37. A. Dembo, and O. Zeitouni Large deviations and applications second ed. 1998 Springer NY
38. E. Avital, and E. Jablonka Animal traditions: behavioral inheritance in evolution 2000 Cambridge University Press NY
39. N. Eldredge, and S. Gould Punctuated equilibrium: an alternative to phyletic gradualism T. Schopf, Models in Paleobiology 1972 Freeman, Cooper and Co. San Francisco pp. 82-115
40. S. Gould The structure of evolutionary theory 2002 Belknap Harvard
41. J. Gomez, M. Verdu, and F. Perfectti Ecological interactions are evolutionarily conserved across the entire tree of life Nature 465 2010 918 921