-
1
-
-
30044431810
-
Transcription-mediated gene fusion in the human genome
-
Akiva P, Toporik A, Edelheit S, Peretz Y, Diber A, Shemesh R, Novik A, Sorek R. 2006. Transcription-mediated gene fusion in the human genome. Genome Res. 16:30-36.
-
(2006)
Genome Res
, vol.16
, pp. 30-36
-
-
Akiva, P.1
Toporik, A.2
Edelheit, S.3
Peretz, Y.4
Diber, A.5
Shemesh, R.6
Novik, A.7
Sorek, R.8
-
2
-
-
34247360831
-
Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes
-
Alekseyenko AV, Kim N, Lee CJ. 2007. Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes. RNA. 13:661-670.
-
(2007)
RNA
, vol.13
, pp. 661-670
-
-
Alekseyenko, A.V.1
Kim, N.2
Lee, C.J.3
-
3
-
-
34547624125
-
A novel testis ubiquitin-binding protein gene arose by exon shuffling in hominoids
-
Babushok DV, Ohshima K, Ostertag EM, Chen X, Wang Y, Mandal PK, Okada N, Abrams CS, Kazazian HH Jr. 2007. A novel testis ubiquitin-binding protein gene arose by exon shuffling in hominoids. Genome Res. 17:1129-1138.
-
(2007)
Genome Res
, vol.17
, pp. 1129-1138
-
-
Babushok, D.V.1
Ohshima, K.2
Ostertag, E.M.3
Chen, X.4
Wang, Y.5
Mandal, P.K.6
Okada, N.7
Abrams, C.S.8
Kazazian Jr., H.H.9
-
4
-
-
34247874698
-
Current topics in genome evolution: Molecular mechanisms of new gene formation
-
Babushok DV, Ostertag EM, Kazazian HH Jr. 2007. Current topics in genome evolution: molecular mechanisms of new gene formation. Cell Mol Life Sci. 64:542-554.
-
(2007)
Cell Mol Life Sci
, vol.64
, pp. 542-554
-
-
Babushok, D.V.1
Ostertag, E.M.2
Kazazian Jr., H.H.3
-
5
-
-
56449118064
-
Retrocopy contributions to the evolution of the human genome
-
Baertsch R, Diekhans M, Kent WJ, Haussler D, Brosius J. 2008. Retrocopy contributions to the evolution of the human genome. BMC Genomics. 9:466.
-
(2008)
BMC Genomics
, vol.9
, pp. 466
-
-
Baertsch, R.1
Diekhans, M.2
Kent, W.J.3
Haussler, D.4
Brosius, J.5
-
6
-
-
50649109231
-
Genome-wide analyses of alternative splicing in plants: Opportunities and challenges
-
Barbazuk WB, Fu Y, Mc Ginnis KM. 2008. Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res. 18:1381-1392.
-
(2008)
Genome Res
, vol.18
, pp. 1381-1392
-
-
Barbazuk, W.B.1
Fu, Y.2
Mc Ginnis, K.M.3
-
7
-
-
58849161775
-
Hotspots of biased nucleotide substitutions in human genes
-
Berglund J, Pollard KS, Webster MT. 2009. Hotspots of biased nucleotide substitutions in human genes. PLoS Biol. 7:e26.
-
(2009)
PLoS Biol
, vol.7
-
-
Berglund, J.1
Pollard, K.S.2
Webster, M.T.3
-
8
-
-
2442677652
-
Genetic signatures of strong recent positive selection at the lactase gene
-
Bersaglieri T, Sabeti PC, Patterson N, Vanderploeg T, Schaffner SF, Drake JA, Rhodes M, Reich DE, Hirschhorn JN. 2004. Genetic signatures of strong recent positive selection at the lactase gene. Am J Hum Genet. 74:1111-1120.
-
(2004)
Am J Hum Genet
, vol.74
, pp. 1111-1120
-
-
Bersaglieri, T.1
Sabeti, P.C.2
Patterson, N.3
Vanderploeg, T.4
Schaffner, S.F.5
Drake, J.A.6
Rhodes, M.7
Reich, D.E.8
Hirschhorn, J.N.9
-
9
-
-
0001126390
-
Do genes-in-pieces imply proteins-in-pieces?
-
Blake CCF. 1978. Do genes-in-pieces imply proteins-in-pieces? Nature. 273:267.
-
(1978)
Nature
, vol.273
, pp. 267
-
-
Ccf, B.1
-
10
-
-
0032865868
-
RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements
-
Brosius J. 1999. RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements. Gene. 238:115-134.
-
(1999)
Gene
, vol.238
, pp. 115-134
-
-
Brosius, J.1
-
11
-
-
0026447994
-
On "genomenclature": A comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA"
-
Brosius J, Gould SJ. 1992. On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA". Proc Natl Acad Sci USA. 89:10706-10710.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 10706-10710
-
-
Brosius, J.1
Gould, S.J.2
-
12
-
-
6944242766
-
Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux
-
Burki F, Kaessmann H. 2004. Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux. Nat Genet. 36:1061-1063.
-
(2004)
Nat Genet
, vol.36
, pp. 1061-1063
-
-
Burki, F.1
Kaessmann, H.2
-
13
-
-
34347389905
-
Three distinct modes of intron dynamics in the evolution of eukaryotes
-
Carmel L, Wolf YI, Rogozin IB, Koonin EV. 2007. Three distinct modes of intron dynamics in the evolution of eukaryotes. Genome Res. 17:1034-1044.
-
(2007)
Genome Res
, vol.17
, pp. 1034-1044
-
-
Carmel, L.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
14
-
-
33845982198
-
Characterization of intron loss events in mammals
-
Coulombe-Huntington J, Majewski J. 2007. Characterization of intron loss events in mammals. Genome Res. 17:23-32.
-
(2007)
Genome Res
, vol.17
, pp. 23-32
-
-
Coulombe-Huntington, J.1
Majewski, J.2
-
15
-
-
35348889007
-
A sequence-based model accounts largely for the relationship of intron positions to protein structural features
-
De Kee DW, Gopalan V, Stoltzfus A. 2007. A sequence-based model accounts largely for the relationship of intron positions to protein structural features. Mol Biol Evol. 24:2158-2168.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2158-2168
-
-
De Kee, D.W.1
Gopalan, V.2
Stoltzfus, A.3
-
16
-
-
0032574738
-
Toward a resolution of the introns early/late debate: Only phase zero introns are correlated with the structure of ancient proteins
-
de Souza SJ, Long M, Klein RJ, Roy S, Lin S, Gilbert W. 1998. Toward a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins. Proc Natl Acad Sci USA. 95:5094-5099.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5094-5099
-
-
De Souza, S.J.1
Long, M.2
Klein, R.J.3
Roy, S.4
Lin, S.5
Gilbert, W.6
-
17
-
-
0031968001
-
The involvement ofcellular recombination and repair genes in RNA-mediated recombination in Saccharomyces cerevisiae
-
Derr LK. 1998. The involvement ofcellular recombination and repair genes in RNA-mediated recombination in Saccharomyces cerevisiae. Genetics 148:937-945.
-
(1998)
Genetics
, vol.148
, pp. 937-945
-
-
Derr, L.K.1
-
18
-
-
33846021292
-
Tissue-specific differences in human transfer RNA expression
-
Dittmar KA, Goodenbour JM, Pan T. 2006. Tissue-specific differences in human transfer RNA expression. PLoS Genet. 2:e221.
-
(2006)
PLoS Genet
, vol.2
-
-
Dittmar, K.A.1
Goodenbour, J.M.2
Pan, T.3
-
19
-
-
0042817834
-
Phosphatidylinositol phosphate kinases put PI4,5P(2) in its place
-
Doughman RL, Firestone AJ, Anderson RA. 2003. Phosphatidylinositol phosphate kinases put PI4,5P(2) in its place. J Membr Biol. 194:77-89.
-
(2003)
J Membr Biol
, vol.194
, pp. 77-89
-
-
Doughman, R.L.1
Firestone, A.J.2
Anderson, R.A.3
-
20
-
-
1642475221
-
Extensive gene traffic on the mammalian X chromosome
-
Emerson JJ, Kaessmann H, Betrán E, Long M. 2004. Extensive gene traffic on the mammalian X chromosome. Science 303:537-540.
-
(2004)
Science
, vol.303
, pp. 537-540
-
-
Emerson, J.J.1
Kaessmann, H.2
Betrán, E.3
Long, M.4
-
21
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
DOI 10.1038/74184
-
Esnault C, Maestre J, Heidmann T. 2000. Human LINE retrotransposons generate processed pseudogenes. Nat Genet. 24:363-367. (Pubitemid 30187433)
-
(2000)
Nature Genetics
, vol.24
, Issue.4
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
22
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N. 2008. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet. 9:102-114.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
23
-
-
0348048755
-
L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish
-
Furano AV, Duvernell DD, Boissinot S. 2004. L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends Genet. 20:9-14.
-
(2004)
Trends Genet.
, vol.20
, pp. 9-14
-
-
Furano, A.V.1
Duvernell, D.D.2
Boissinot, S.3
-
24
-
-
58149328496
-
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
-
Galtier N, Duret L, Glémin S, Ranwez V. 2009. GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates. Trends Genet. 25:1-5.
-
(2009)
Trends Genet.
, vol.25
, pp. 1-5
-
-
Galtier, N.1
Duret, L.2
Glémin, S.3
Ranwez, V.4
-
25
-
-
0018263844
-
Why genes in pieces?
-
Gilbert W. 1978. Why genes in pieces? Nature 271:501.
-
(1978)
Nature
, vol.271
, pp. 501
-
-
Gilbert, W.1
-
26
-
-
0019860994
-
Correlation of DNA exonic regions with protein structural units in haemoglobin
-
Go M. 1981. Correlation of DNA exonic regions with protein structural units in haemoglobin. Nature 291:90-92.
-
(1981)
Nature
, vol.291
, pp. 90-92
-
-
Go, M.1
-
27
-
-
52949095077
-
Retrotransposons revisited: The restraint and rehabilitation of parasites
-
Goodier JL, Kazazian HH Jr. 2008. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135:23-35.
-
(2008)
Cell
, vol.135
, pp. 23-35
-
-
Goodier, J.L.1
Kazazian Jr., H.H.2
-
28
-
-
0033360816
-
The genomic record of Humankind's evolutionary roots
-
Goodman M. 1999. The genomic record of Humankind's evolutionary roots. Am J Hum Genet. 64:31-39.
-
(1999)
Am J Hum Genet
, vol.64
, pp. 31-39
-
-
Goodman, M.1
-
29
-
-
0028905057
-
Unrooted genealogical tree probabilities in the infinitely-many-sites model
-
Griffiths RC, Tavaré S. 1995. Unrooted genealogical tree probabilities in the infinitely-many-sites model. Math Biosci. 127:77-98.
-
(1995)
Math Biosci
, vol.127
, pp. 77-98
-
-
Griffiths, R.C.1
Tavaré, S.2
-
30
-
-
34748859663
-
Rpn10-mediated degradation of ubiquitinated proteins is essential for mouse development
-
Hamazaki J, Sasaki K, Kawahara H, Hisanaga S, Tanaka K, Murata S. 2007. Rpn10-mediated degradation of ubiquitinated proteins is essential for mouse development. Mol Cell Biol. 27: 6629-6638.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 6629-6638
-
-
Hamazaki, J.1
Sasaki, K.2
Kawahara, H.3
Hisanaga, S.4
Tanaka, K.5
Murata, S.6
-
31
-
-
17844396017
-
Transcribed processed pseudogenes in the human genome: An intermediate form of expressed retrosequence lacking proteincoding ability
-
Harrison PM, Zheng D, Zhang Z, Carriero N, Gerstein M. 2005. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking proteincoding ability. Nucleic Acids Res. 33:2374-2383.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2374-2383
-
-
Harrison, P.M.1
Zheng, D.2
Zhang, Z.3
Carriero, N.4
Gerstein, M.5
-
32
-
-
0035369556
-
A ubiquitin-interacting motif conserved in components of the proteasomal and lysosomal protein degradation systems
-
Hofmann K, Falquet L 2001. A ubiquitin-interacting motif conserved in components of the proteasomal and lysosomal protein degradation systems. Trends Biochem Sci. 26:347-350.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 347-350
-
-
Hofmann, K.1
Falquet, L.2
-
34
-
-
44349116590
-
Proteasome subunit Rpn13 is a novel ubiquitin receptor
-
Husnjak K, Elsasser S, Zhang N, Chen X, Randles L, Shi Y, Hofmann K, Walters KJ, Finley D, Dikic I. 2008. Proteasome subunit Rpn13 is a novel ubiquitin receptor. Nature 453:481-488.
-
(2008)
Nature
, vol.453
, pp. 481-488
-
-
Husnjak, K.1
Elsasser, S.2
Zhang, N.3
Chen, X.4
Randles, L.5
Shi, Y.6
Hofmann, K.7
Walters, K.J.8
Finley, D.9
Dikic, I.10
-
35
-
-
59849108350
-
Quantitative regulation of alternative splicing in evolution and development
-
Irimia M, Rukov JL, Roy SW, Vinther J, Garcia-Fernandez J. 2009. Quantitative regulation of alternative splicing in evolution and development. Bioessays 31:40-50.
-
(2009)
Bioessays
, vol.31
, pp. 40-50
-
-
Irimia, M.1
Rukov, J.L.2
Roy, S.W.3
Vinther, J.4
Garcia-Fernandez, J.5
-
36
-
-
57749177443
-
RNA-based gene duplication: Mechanistic and evolutionary insights
-
Kaessmann H, Vinckenbosch N, Long M. 2009. RNA-based gene duplication: mechanistic and evolutionary insights. Nat Rev Genet. 10:19-31.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 19-31
-
-
Kaessmann, H.1
Vinckenbosch, N.2
Long, M.3
-
37
-
-
38049061206
-
Alternative splicing: Current perspectives
-
Kim E, Goren A, Ast G. 2008. Alternative splicing: current perspectives. Bioessays 30:38-47.
-
(2008)
Bioessays
, vol.30
, pp. 38-47
-
-
Kim, E.1
Goren, A.2
Ast, G.3
-
38
-
-
45149125707
-
Population genetic analysis of the N-acylsphingosine amidohydrolase gene associated with mental activity in humans
-
Kim HL, Satta Y. 2008. Population genetic analysis of the N-acylsphingosine amidohydrolase gene associated with mental activity in humans. Genetics 178:1505-1515.
-
(2008)
Genetics
, vol.178
, pp. 1505-1515
-
-
Kim, H.L.1
Satta, Y.2
-
39
-
-
33845875196
-
Relating three-dimensional structures to protein networks provides evolutionary insights
-
Kim PM, Lu LJ, Xia Y, Gerstein MB. 2006. Relating three-dimensional structures to protein networks provides evolutionary insights. Science 314:1938-1941.
-
(2006)
Science
, vol.314
, pp. 1938-1941
-
-
Kim, P.M.1
Lu, L.J.2
Xia, Y.3
Gerstein, M.B.4
-
41
-
-
66249132041
-
MRNA retrotransposition coupled with 5' inversion as a possible source of new genes
-
Kojima KK, Okada N. 2009. mRNA retrotransposition coupled with 5' inversion as a possible source of new genes. Mol Biol Evol. 26:1405-1420.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1405-1420
-
-
Kojima, K.K.1
Okada, N.2
-
42
-
-
0035510644
-
Origin of alternative splicing by tandem exon duplication
-
Kondrashov FA, Koonin EV. 2001. Origin of alternative splicing by tandem exon duplication. Hum Mol Genet. 10:2661-2669.
-
(2001)
Hum Mol Genet
, vol.10
, pp. 2661-2669
-
-
Kondrashov, F.A.1
Koonin, E.V.2
-
43
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Analysis and sequence alignment
-
Kumar S, Tamura K, Nei M. 2004. MEGA3: integrated software for Molecular Evolutionary Analysis and sequence alignment. Brief Bioinform. 5:150-163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
44
-
-
6344267228
-
Pattern of sequence variation across 213 environmental response genes
-
Livingston RJ, von Niederhausern A, Jegga AG, Crawford DC, Carlson CS, Rieder MJ, Gowrisankar S, Aronow BJ, Weiss RB, Nickerson DA. 2004. Pattern of sequence variation across 213 environmental response genes. Genome Res. 14:1821-1831.
-
(2004)
Genome Res
, vol.14
, pp. 1821-1831
-
-
Livingston, R.J.1
Von Niederhausern, A.2
Jegga, A.G.3
Crawford, D.C.4
Carlson, C.S.5
Rieder, M.J.6
Gowrisankar, S.7
Aronow, B.J.8
Weiss, R.B.9
Nickerson, D.A.10
-
45
-
-
0242354129
-
The origin of new genes: Glimpses from the young and old
-
Long M, Betrán E, Thornton K, Wang W. 2003. The origin of new genes: glimpses from the young and old. Nat Rev Genet. 4:865-875.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 865-875
-
-
Long, M.1
Betrán, E.2
Thornton, K.3
Wang, W.4
-
46
-
-
27844557002
-
Emergence of young human genes after a burst of retroposition in primates
-
Marques AC, Dupanloup I, Vinckenbosch N, Reymond A, Kaessmann H. 2005. Emergence of young human genes after a burst of retroposition in primates. PLoS Biol. 3:e357.
-
(2005)
PLoS Biol
, vol.3
-
-
Marques, A.C.1
Dupanloup, I.2
Vinckenbosch, N.3
Reymond, A.4
Kaessmann, H.5
-
47
-
-
33745435794
-
Why did modern human populations disperse from Africa ca 60,000 years ago?
-
Mellars P. 2006. Why did modern human populations disperse from Africa ca. 60,000 years ago? A new model. Proc Natl Acad Sci USA. 103:9381-9386.
-
(2006)
A New Model. Proc Natl Acad Sci USA.
, vol.103
, pp. 9381-9386
-
-
Mellars, P.1
-
48
-
-
0035193659
-
Divergence pattern of animal gene families and relationship with the Cambrian explosion
-
Miyata T, Suga H. 2001. Divergence pattern of animal gene families and relationship with the Cambrian explosion. Bioessays 23:1018-1027.
-
(2001)
Bioessays
, vol.23
, pp. 1018-1027
-
-
Miyata, T.1
Suga, H.2
-
53
-
-
27944474033
-
Selectionism and neutralism in molecular evolution
-
Nei M. 2005. Selectionism and neutralism in molecular evolution. Mol Biol Evol. 22:2318-2342.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2318-2342
-
-
Nei, M.1
-
55
-
-
1542682570
-
Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates
-
Ohshima K, Hattori M, Yada T, Gojobori T, Sakaki Y, Okada N. 2003. Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates. Genome Biol. 4:R74.
-
(2003)
Genome Biol
, vol.4
-
-
Ohshima, K.1
Hattori, M.2
Yada, T.3
Gojobori, T.4
Sakaki, Y.5
Okada, N.6
-
56
-
-
23844437243
-
SINEs and LINEs: Symbionts of eukaryotic genomes with a common tail
-
Ohshima K, Okada N. 2005. SINEs and LINEs: symbionts of eukaryotic genomes with a common tail. Cytogenet Genome Res. 110:475-490.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 475-490
-
-
Ohshima, K.1
Okada, N.2
-
57
-
-
23944492134
-
Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database
-
(40 co-authors)
-
Omenn GS, States DJ, Adamski M, et al. (40 co-authors). 2005. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 5:3226-3245.
-
(2005)
Proteomics
, vol.5
, pp. 3226-3245
-
-
Omenn, G.S.1
States, D.J.2
Adamski, M.3
-
58
-
-
51149123490
-
Wnt3a-mediated formation of phosphatidylinositol 4,5-bisphosphate regulates LRP6 phosphorylation
-
(13 co-authors)
-
Pan W, Choi SC, Wang H, et al. (13 co-authors). 2008. Wnt3a-mediated formation of phosphatidylinositol 4,5-bisphosphate regulates LRP6 phosphorylation. Science 321:1350-1353.
-
(2008)
Science
, vol.321
, pp. 1350-1353
-
-
Pan, W.1
Choi, S.C.2
Wang, H.3
-
59
-
-
33846990531
-
Splicing and the evolution of proteins in mammals
-
Parmley JL, Urrutia AO, Potrzebowski L, Kaessmann H, Hurst LD. 2007. Splicing and the evolution of proteins in mammals. PLoS Biol. 5:e14.
-
(2007)
PLoS Biol
, vol.5
-
-
Parmley, J.L.1
Urrutia, A.O.2
Potrzebowski, L.3
Kaessmann, H.4
Hurst, L.D.5
-
60
-
-
30044445670
-
Tandem chimerism as a means to increase protein complexity in the human genome
-
Parra G, Reymond A, Dabbouseh N, Dermitzakis ET, Castelo R, Thomson TM, Antonarakis SE, Guigó R. 2006. Tandem chimerism as a means to increase protein complexity in the human genome. Genome Res. 16:37-44.
-
(2006)
Genome Res
, vol.16
, pp. 37-44
-
-
Parra, G.1
Reymond, A.2
Dabbouseh, N.3
Dermitzakis, E.T.4
Castelo, R.5
Thomson, T.M.6
Antonarakis, S.E.7
Guigó, R.8
-
61
-
-
0032885169
-
Genome evolution and the evolution of exon-shuffling\a review
-
Patthy L 1999. Genome evolution and the evolution of exon-shuffling\a review. Gene 238:103-114.
-
(1999)
Gene
, vol.238
, pp. 103-114
-
-
Patthy, L.1
-
62
-
-
4344647504
-
Tissue-specific codon usage and the expression of human genes
-
Plotkin JB, Robins H, Levine AJ. 2004. Tissue-specific codon usage and the expression of human genes. Proc Natl Acad Sci USA. 101:12588-12591.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12588-12591
-
-
Plotkin, J.B.1
Robins, H.2
Levine, A.J.3
-
63
-
-
0032544230
-
Structure of type IIβ phosphatidylinositol phosphate kinase: A protein kinase fold flattened for interfacial phosphorylation
-
Rao VD, Misra S, Boronenkov IV, Anderson RA, Hurley JH. 1998. Structure of type IIβ phosphatidylinositol phosphate kinase: a protein kinase fold flattened for interfacial phosphorylation. Cell 94:829-839.
-
(1998)
Cell
, vol.94
, pp. 829-839
-
-
Rao, V.D.1
Misra, S.2
Boronenkov, I.V.3
Anderson, R.A.4
Hurley, J.H.5
-
64
-
-
45849119853
-
Birth and rapid subcellular adaptation of a hominoid-specific CDC14 protein
-
Rosso L, Marques AC, Weier M, Lambert N, Lambot MA, Vanderhaeghen P, Kaessmann H. 2008. Birth and rapid subcellular adaptation of a hominoid-specific CDC14 protein. PLoS Biol. 6:e140.
-
(2008)
PLoS Biol
, vol.6
-
-
Rosso, L.1
Marques, A.C.2
Weier, M.3
Lambert, N.4
Ma, L.5
Vanderhaeghen, P.6
Kaessmann, H.7
-
65
-
-
33644847698
-
The evolution of spliceosomal introns: Patterns, puzzles and progress
-
Roy SW, Gilbert W. 2006. The evolution of spliceosomal introns: patterns, puzzles and progress. Nat Rev Genet. 7:211-221.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 211-221
-
-
Roy, S.W.1
Gilbert, W.2
-
66
-
-
35349012592
-
Genome-wide detection and characterization of positive selection in human populations
-
(13 co-authors)
-
Sabeti PC, Varilly P, Fry B, et al. (13 co-authors). 2007. Genome-wide detection and characterization of positive selection in human populations. Nature 449:913-918.
-
(2007)
Nature
, vol.449
, pp. 913-918
-
-
Sabeti, P.C.1
Varilly, P.2
Fry, B.3
-
67
-
-
0035865322
-
A map of human genome sequence variation containing 1. 42 million single nucleotide polymorphisms
-
(41 co-authors)
-
Sachidanandam R Weissman D, Schmidt SC, et al. (41 co-authors). 2001. A map of human genome sequence variation containing 1. 42 million single nucleotide polymorphisms. Nature 409: 928-933.
-
(2001)
Nature
, vol.409
, pp. 928-933
-
-
Sachidanandam Weissman R, D.1
Schmidt, S.C.2
-
68
-
-
33846665251
-
Frequent emergence and functional resurrection of processed pseudo-genes in the human and mouse genomes
-
Sakai H, Koyanagi KO, Imanishi T, Itoh T, Gojobori T. 2007. Frequent emergence and functional resurrection of processed pseudo-genes in the human and mouse genomes. Gene 389:196-203.
-
(2007)
Gene
, vol.389
, pp. 196-203
-
-
Sakai, H.1
Koyanagi, K.O.2
Imanishi, T.3
Itoh, T.4
Gojobori, T.5
-
69
-
-
20244369738
-
Regulation of anaphylactic responses by phosphatidylinositol phosphate kinase type i a
-
(25 co-authors)
-
Sasaki J, Sasaki T, Yamazaki M, et al. (25 co-authors). 2005. Regulation of anaphylactic responses by phosphatidylinositol phosphate kinase type I a. J Exp Med. 201:859-870.
-
(2005)
J Exp Med
, vol.201
, pp. 859-870
-
-
Sasaki, J.1
Sasaki, T.2
Yamazaki, M.3
-
70
-
-
0032859647
-
Module-intron correlation and intron sliding in family F/10 xylanase genes
-
Sato Y, Niimura Y, Yura K, Go M. 1999. Module-intron correlation and intron sliding in family F/10 xylanase genes. Gene 238:93-101.
-
(1999)
Gene
, vol.238
, pp. 93-101
-
-
Sato, Y.1
Niimura, Y.2
Yura, K.3
Go, M.4
-
71
-
-
33644864034
-
Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study
-
States DJ, Omenn GS, Blackwell TW, Fermin D, Eng J, Speicher DW, Hanash SM. 2006. Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study. Nat Biotechnol. 24:333-338.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 333-338
-
-
States, D.J.1
Omenn, G.S.2
Blackwell, T.W.3
Fermin, D.4
Eng, J.5
Speicher, D.W.6
Hanash, S.M.7
-
72
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet. 68:978-989.
-
(2001)
Am J Hum Genet
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
73
-
-
0028043139
-
Testing the exon theory of genes: The evidence from protein structure
-
Stoltzfus A, Spencer DF, Zuker M, Logsdon JM Jr, Doolittle WF. 1994. Testing the exon theory of genes: the evidence from protein structure. Science 265:202-207.
-
(1994)
Science
, vol.265
, pp. 202-207
-
-
Stoltzfus, A.1
Spencer, D.F.2
Zuker, M.3
Logsdon Jr., J.M.4
Doolittle, W.F.5
-
74
-
-
0007003927
-
Sequence of a mouse germ-line gene for a variable region of an immunoglobulin light chain
-
Tonegawa S, Maxam AM, Tizard R, Bernard O, Gilbert W. 1978. Sequence of a mouse germ-line gene for a variable region of an immunoglobulin light chain. Proc Natl Acad Sci USA. 75:1485-1489.
-
(1978)
Proc Natl Acad Sci USA
, vol.75
, pp. 1485-1489
-
-
Tonegawa, S.1
Maxam, A.M.2
Tizard, R.3
Bernard, O.4
Gilbert, W.5
-
75
-
-
26244442102
-
Modules, multidomain proteins and organismic complexity
-
Tordai H, Nagy A, Farkas K, Bányai L, Patthy L 2005. Modules, multidomain proteins and organismic complexity. FEBS J. 272: 5064-5078.
-
(2005)
FEBS J
, vol.272
, pp. 5064-5078
-
-
Tordai, H.1
Nagy, A.2
Farkas, K.3
Bányai, L.4
Patthy, L.5
-
77
-
-
67649823451
-
The UIM protein, S5A, is ubiquitinated by all types of ubiquitin ligases by a mechanism different from typical substrate recognition
-
Uchiki T, Kim HT, Zhai B, Gygi SP, Johnston JA, O'Bryan JP, Goldberg AL 2009. The UIM protein, S5A, is ubiquitinated by all types of ubiquitin ligases by a mechanism different from typical substrate recognition. J Biol Chem. 284:12622-12632.
-
(2009)
J Biol Chem
, vol.284
, pp. 12622-12632
-
-
Uchiki, T.1
Kim, H.T.2
Zhai, B.3
Gygi, S.P.4
Johnston, J.A.5
O'Bryan, J.P.6
Goldberg, A.L.7
-
78
-
-
3142566639
-
Multiubiquitin chain receptors define a layer of substrate selectivity in the ubiquitin-proteasome system
-
Verma R, Oania R, Graumann J, Deshaies RJ. 2004. Multiubiquitin chain receptors define a layer of substrate selectivity in the ubiquitin-proteasome system. Cell 118:99-110.
-
(2004)
Cell
, vol.118
, pp. 99-110
-
-
Verma, R.1
Oania, R.2
Graumann, J.3
Deshaies, R.J.4
-
80
-
-
75549089545
-
The Proteomics Identifications database: 2010 update
-
Vizcáino JA, Côté R, Reisinger F, Barsnes H, Foster JM, Rameseder J, Hermjakob H, Martens L 2010. The Proteomics Identifications database: 2010 update. Nucleic Acids Res. 38: D736-D742.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Vizcáino, J.A.1
Côté, R.2
Reisinger, F.3
Barsnes, H.4
Foster, J.M.5
Rameseder, J.6
Hermjakob, H.7
Martens, L.8
-
81
-
-
17144417404
-
Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition
-
Wang Q, Young P, Walters KJ. 2005. Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition. J Mol Biol. 348:727-739.
-
(2005)
J Mol Biol
, vol.348
, pp. 727-739
-
-
Wang, Q.1
Young, P.2
Walters, K.J.3
-
82
-
-
2442576123
-
Duplication-degeneration as a mechanism of gene fission and the origin of new genes in Drosophila species
-
Wang W, Yu H, Long M. 2004. Duplication-degeneration as a mechanism of gene fission and the origin of new genes in Drosophila species. Nat Genet. 36:523-527.
-
(2004)
Nat Genet
, vol.36
, pp. 523-527
-
-
Wang, W.1
Yu, H.2
Long, M.3
-
83
-
-
52949087561
-
Loss of PIP5KIß demonstrates that PIP5KI isoform-specific PIP2 synthesis is required for IP3 formation
-
(11 co-authors)
-
Wang Y, Chen X, Lian L, et al. (11 co-authors). 2008. Loss of PIP5KIß demonstrates that PIP5KI isoform-specific PIP2 synthesis is required for IP3 formation. Proc Natl Acad Sci USA. 105: 14064-14069.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 14064-14069
-
-
Wang, Y.1
Chen, X.2
Lian, L.3
-
85
-
-
0022555861
-
Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information
-
Weiner AM, Deininger PL, Efstratiadis A. 1986. Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu Rev Biochem. 55: 631-661.
-
(1986)
Annu Rev Biochem
, vol.55
, pp. 631-661
-
-
Weiner, A.M.1
Deininger, P.L.2
Efstratiadis, A.3
-
86
-
-
0036796740
-
Distribution and evolution of von Willebrand/integrin A domains: Widely dispersed domains with roles in cell adhesion and elsewhere
-
Whittaker CA, Hynes RO. 2002. Distribution and evolution of von Willebrand/integrin A domains: widely dispersed domains with roles in cell adhesion and elsewhere. Mol Biol Cell. 13: 3369-3387.
-
(2002)
Mol Biol Cell
, vol.13
, pp. 3369-3387
-
-
Whittaker, C.A.1
Hynes, R.O.2
-
87
-
-
0032489524
-
Characterization of two polyubiquitin binding sites in the 26 S protease subunit 5a
-
Young P, Deveraux Q, Beal RE, Pickart CM, Rechsteiner M. 1998. Characterization of two polyubiquitin binding sites in the 26 S protease subunit 5a. J Biol Chem. 273:5461-5467.
-
(1998)
J Biol Chem
, vol.273
, pp. 5461-5467
-
-
Young, P.1
Deveraux, Q.2
Beal, R.E.3
Pickart, C.M.4
Rechsteiner, M.5
-
88
-
-
35648987151
-
Analysis of the role of retrotransposition in gene evolution in vertebrates
-
Yu Z, Morais D, Ivanga M, Harrison PM. 2007. Analysis of the role of retrotransposition in gene evolution in vertebrates. BMC Bioinformatics. 8:308.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 308
-
-
Yu, Z.1
Morais, D.2
Ivanga, M.3
Harrison, P.M.4
-
89
-
-
72049113083
-
Positive selection for the male functionality of a co-retroposed gene in the hominoids
-
Zhang Y, Lu S, Zhao S, Zheng X, Long M, Wei L 2009. Positive selection for the male functionality of a co-retroposed gene in the hominoids. BMC Evol Biol. 9:252-264.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 252-264
-
-
Zhang, Y.1
Lu, S.2
Zhao, S.3
Zheng, X.4
Long, M.5
Wei, L.6
-
90
-
-
3142594265
-
Large-scale analysis of pseudogenes in the human genome
-
Zhang Z, Gerstein M. 2004. Large-scale analysis of pseudogenes in the human genome. Curr Opin Genet Dev. 14:328-335.
-
(2004)
Curr Opin Genet Dev
, vol.14
, pp. 328-335
-
-
Zhang, Z.1
Gerstein, M.2
-
91
-
-
0346752110
-
Millions of years of evolution preserved: A comprehensive catalog of the processed pseudogenes in the human genome
-
Zhang Z, Harrison PM, Liu Y, Gerstein M. 2003. Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome. Genome Res. 13: 2541-2558.
-
(2003)
Genome Res
, vol.13
, pp. 2541-2558
-
-
Zhang, Z.1
Harrison, P.M.2
Liu, Y.3
Gerstein, M.4
|