Vrmlgen: An R package for 3D data visualization on the web

Journal of Statistical Software

Volumn 36, Issue 8, 2010, Pages 1-18

  Glaab, Enrico ^a   Garibaldi, Jonathan M ^a   Krasnogor, Natalio ^a  

^a UNIVERSITY OF NOTTINGHAM   (United Kingdom)

Author keywords

3D; Chart; Graph; Plot; Visualization; VRML

Indexed keywords

EID: 77958120648     PISSN: 15487660     EISSN: 15487660     Source Type: Journal    
DOI: 10.18637/jss.v036.i08     Document Type: Article

References (44)

1. Adler D, Murdoch D (2010). rgl: 3D Visualization Device System (OpenGL). R package version 0.91, URL http://CRAN.R-project.org/package=rgl.
2. Ames AL, Nadeau DR, Moreland JL (1997). The VRML 2.0 Sourcebook. John Wiley & Sons, Inc., New York.
3. Bitmanagement (2009). BS Contact VRML 7.1. URL http://www.bitmanagement.de/en/products/interactive-3d-clients/bs-contact/, accessed 2010-08-04.
4. Bowman AW, Azzalini A (2010). sm: Smoothing Methods for Nonparametric Regression and Density Estimation. R package version 2.2-4.1, URL http://CRAN.R-project.org/package=sm.
5. Buja A, Swayne DF, Littman M, Dean N, Hofmann H, Chen L (2008). Data Visualization with Multidimensional Scaling. Journal of Computational and Graphical Statistics, 17(2), 444-472.
6. CFADC (2009). Controlled Fusion Atomic Data Center. URL http://www-cfadc.phy.ornl.gov/, accessed 2010-08-04. Oak Ridge National Laboratory, Physics Division.
7. Council of European Social Science (2009). CESSDA Data Portal. URL http://www.cessda.org/accessing, accessed 2010-08-04.
8. Department of Finance (2009). Financial Data Finder. URL http://fisher.osu.edu/fin/osudata.htm, accessed 2010-08-04. Ohio State University.
9. Department of Physics and Astronomy (2009). Atomic Data for Astrophysics. URL http://www.pa.uky.edu/~verner/atom.html, accessed 2010-08-04. University of Kentucky.
10. Diggle P (1990). Time Series: A Biostatistical Introduction. Oxford University Press, Oxford.
11. Edgar R, Domrachev M, Lash AE (2002).Gene Expression Omnibus: NCBI Gene Expression and Hybridization Array Data Repository. Nucleic Acids Research, 30(1), 207.
12. Feng D, Tierney L (2008). Computing and Displaying Isosurfaces in R. Journal of Statistical Software, 28(1), 1-24. URL http://www.jstatsoft.org/v28/i01/
13. Feng D, Tierney L (2010). misc3d: Miscellaneous 3D Plots. R package version 0.7-0, URL http://CRAN.R-project.org/package=misc3d.
14. Genovese A (2009). 3D City Block Buildings. URL http://artist-3d.com/free_3d_ models/dnm/model_disp.php?uid=2030, accessed 2010-08-04.
15. Glaab E, Garibaldi JM, Krasnogor N (2009). ArrayMining: A Modular Web-Application for Microarray Analysis Combining Ensemble and Consensus Methods with Cross-Study Normalization. BMC Bioinformatics, 10(1), 358.
16. Infobiotics Project (2009). Infobiotics Bioinformatics Servers. URL http://www.infobiotic.org/accessed 2010-08-04.
17. Klemela J (2010). denpro: Visualization of Multivariate, Functions, Sets, and Data. R package version 0.9.0, URL http://CRAN.R-project.org/package=denpro.
18. Kraus M (2003). LiveGraphics3D Documentation. URL http://wwwvis.informatik.uni-stuttgart.de/~kraus/LiveGraphics3D/, accessed 2010-08-04.
19. Lemon J (2010a). plotrix: A Package in the Red Light District of R. R News, 6(4), 8-12. URL http://CRAN.R-project.org/doc/Rnews/.
20. Lemon J (2010b). plotrix: Various Plotting Functions. R package version 2.9-5, URL http://CRAN.R-project.org/package=plotrix.
21. Ligges U, Maechler M (2003). scatterplot3d - An R Package for Visualizing Multivariate Data. Journal of Statistical Software, 8(11), 1-20. URL http://www.jstatsoft.org/v08/i11/
22. Ligges U, Maechler M (2010). scatterplot3d: 3D Scatter Plot. R package version 0.3-30, URL http://CRAN.R-project.org/package=scatterplot3d.
23. Maechler M, Hornik K, Ripley BD (2009). xgobi: Interface to the xgobi and xgvis Programs for Graphical Data Analysis. R package version 1.2-14, URL http://CRAN.R-project.org/package=xgobi.
24. Marchini JL, Heaton C, Ripley BD (2010). fastICA: FastICA Algorithms to Perform ICA and Projection Pursuit. R package version 1.1-11, URL http://CRAN.R-project.org/package=fastICA.
25. Murray J, Van Ryper W (2005). Wavefront OBJ File Format Summary. URL http://www.fileformat.info/format/wavefrontobj/egff.htm, accessed 2010-08-04.
26. NASDAQ OMX (2009). NASDAQ Data Store. URL https://data.nasdaq.com/, ac- cessed 2010-08-04.
27. ParallelGraphics (2009). Cortona 3D Viewer 6.0. URL http://www.parallelgraphics.com/products/cortona3d/, accessed 2010-08-04.
28. Pettijohn JB (1996). A Guide to Locating Financial Information on the Internet. Financial Practice and Education, 6(2), 102-110.
29. Plachetka T (1998). POV Ray: Persistence of Vision Parallel Raytracer. In L Szirmay-Kalos (ed.), Proceedings of Spring Conference on Computer Graphics, Budmerice, Slovakia, pp. 123-129.
30. R Development Core Team (2010a). R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org/.
31. R Development Core Team (2010b). Writing R Extensions. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-11-9, URL http://www.R-project.org/.
32. Sarkar D (2008). lattice: Multivariate Data Visualization with R. Springer-Verlag, New York.
33. Sarkar D (2010). lattice: Lattice Graphics. R package version 0.18-8, URL http://CRAN.R-project.org/package=lattice.
34. Sintzel P (2010). European Topographic Maps. URL http://maps.simutrans.com/europe.html, accessed 2010-08-04.
35. Spiteri I (2008). Transcription Profiling of Human Primary Breast Cancer Panel. URL http://www.ebi.ac.uk/microarray-as/ae/browse.html?keywords=E-TABM-576, accessed 2010-08-04.
36. Swayne DF, Cook D, Buja A (1998). xgobi: Interactive Dynamic Data Visualization in the X Window System. Journal of Computational and Graphical Statistics, 7(1), 113-130.
37. Swayne DF, Temple Lang D, Buja A, Cook D (2003). ggobi: Evolving from xgobi into an Extensible Framework for Interactive Data Visualization. Computational Statistics & Data Analysis, 43(4), 423-444.
38. Thiessen P (2004). VRML2POV Parser. URL http://www.chemicalgraphics.com/paul/vrml2pov/index.html, accessed 2010-08-04.
39. UK Data Archive (2010). Economic and Social Data Service. URL http://www.esds.ac.uk/, accessed 2010-08-04. Universities of Essex and Manchester.
40. Web3D Consortium (2005). VRML Viewers, Browsers & Plug-Ins. URL http://www.web3d.org/x3d/vrml/tools/viewers_and_browsers/, accessed 2010-08-04.
41. Widera P, Garibaldi JM, Krasnogor N (2010). GP Challenge: Evolving Energy Function for Protein Structure Prediction. Genetic Programming and Evolvable Machines, 11(1), 61-88.
42. Wikipedia (2010). Carbon - Wikipedia, The Free Encyclopedia. URL http://en.wikipedia.org/wiki/Carbon, accessed 2010-08-04.
43. World Health Organization (2009). Global Health Atlas - Data Query. URL http://apps.who.int/globalatlas/DataQuery/, accessed 2010-08-04.
44. Zucker MA, Kishore AR, Sukumar R, Dragoset RA (2009). Elemental Data Index. URL http://physics.nist.gov/PhysRefData/Elements/cover.html, accessed 2010-08-04. NIST Physics Laboratory.