Bioinspired optofluidic FRET lasers via DNA scaffolds

Proceedings of the National Academy of Sciences of the United States of America

Volumn 107, Issue 37, 2010, Pages 16039-16042

  Sun, Yuze ^a,b   Shopova, Siyka I ^b,c   Wu, Chung Shieh ^b   Arnold, Stephen ^c   Fan, Xudong ^a,b  

^a UNIVERSITY OF MICHIGAN   (United States)

^b UNIVERSITY OF MISSOURI   (United States)

^c POLYTECHNIC UNIVERSITY   (United States)

Author keywords

Fluorescence resonance energy transfer; Optofluidics; Ring resonators

Indexed keywords

DNA; DNA SCAFFOLD; DYE; MOLECULAR SCAFFOLD; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

ARTICLE; CONCENTRATION (PARAMETERS); DNA HYBRIDIZATION; ENERGY TRANSFER; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENETIC PROCEDURES; LASER; MICROFLUIDICS; OPTICAL BIOSENSOR; OPTICS; OPTOFLUIDIC LASER; PRIORITY JOURNAL; CHEMISTRY; CONFORMATION;

DNA; FLUORESCENCE RESONANCE ENERGY TRANSFER; NUCLEIC ACID CONFORMATION;

EID: 77957978427     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1003581107     Document Type: Article

References (41)

1. Monat C, Domachuk P, Eggleton BJ (2007) Integrated optofluidics: A new river of light. Nat Photonics 1:106-114.
2. Li Z, Psaltis D (2007) Optofluidic dye lasers. Microfluid Nanofluid 4:145-158.
3. Psaltis D, Quake SR, Yang C (2006) Developing optofluidic technology through the fusion of microfluidics and optics. Nature 442:381-386.
4. Qian S-X, Snow JB, Tzeng H-M, Chang RK (1986) Lasing droplets: Highlighting the liquid-air interface by laser emission. Science 231:486-488.
5. Tang SKY, et al. (2009) A multi-color fast-switching microfluidic droplet dye laser. Lab Chip 9:2767-2771.
6. An K, Moon H-J (2003) Laser oscillations with pumping-independent ultrahigh cavity quality factors in evanescent-wave-coupled-gainmicrosphere dye lasers. J Phys Soc Jpn 72:773-776.
7. Moon H-J, Chough Y-T, An K (2000) Cylindrical microcavity laser based on the evanescent-wave-coupled gain. Phys Rev Lett 85:3161-3164.
8. Knight JC, Driver HST, Hutcheon RJ, Robertson GN (1992) Core-resonance capillary-fiber whispering-gallery-mode laser. Opt Lett 17:1280-1282.
9. Shopova SI, Zhu H, Fan X, Zhang P (2007) Optofluidic ring resonator based dye laser. Appl Phys Lett 90:221101.
10. Jiang X, Song Q, Xu L, Fu J, Tonga L (2007) Microfiber knot dye laser based on the evanescent-wave-coupled gain. Appl Phys Lett 90:233501.
11. Helbo B, Kristensen A, Menon A (2003) A micro-cavity fluidic dye laser. J Micromech Microeng 13:307-311.
12. Kou Q, Yesilyurt I, Chen Y (2006) Collinear dual-color laser emission from a microfluidic dye laser. Appl Phys Lett 88:091101.
13. Balslev S, Kristensen A (2005) Microfluidic single-mode laser using high-order Bragg grating and antiguiding segments. Opt Express 13:344-351.
14. Berggren M, Dodabalapur A, Slusher RE, Bao Z (1997) Light amplification in organic thin films using cascade energy transfer. Nature 389:466-469.
15. Shopova SI, et al. (2007) Opto-fluidic ring resonator lasers based on highly efficient resonant energy transfer. Opt Express 15:12735-12742.
16. Förster T (1959) Transfer mechanism of electronic excitation. Discuss Faraday Soc 27:7-17.
17. Armstrong RL, Xie JG, Ruekgauer TE, Pinnick RG (1992) Energy-transfer-assisted lasing from microdroplets seeded with fluorescent sol. Opt Lett 17:943-945.
18. Arnold S, Folan LM (1989) Energy transfer and the photon lifetime within an aerosol particle. Opt Lett 14:387-389.
19. Leung PT, Young K (1988) Theory of enhanced energy transfer in an aerosol particle. J Chem Phys 89:2894-2899.
20. Gotzinger S, et al. (2006) Controlled photon transfer between two individual nanoemitters via shared high-Q modes of a microsphere resonator. Nano Lett 6:1151-1154.
21. Clegg RM, Murchie AIH, Zechel A, Lilley DMJ (1993) Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer. Proc Natl Acad Sci USA 90:2994-2998.
22. Hohng S, Joo C, Ha T (2004) Single-molecule three-color FRET. Biophys J 87:1328-1337.
23. Jares-Erijman EA, Jovin TM (1996) Determination of DNA helical handedness by fluorescence resonance energy transfer. J Mol Biol 257:597-617.
24. Kukolka F, et al. (2006) A single-molecule Förster resonance energy transfer analysis of fluorescent DNA-protein conjugates for nanobiotechnology. Small 2:1083-1089.
25. Lewis FD, Zhang L, Zuo X (2005) Orientation control of fluorescence resonance energy transfer using DNA as a helical scaffold. J Am Chem Soc 127:10002-10003.
26. Ali MA, Panoutsopoulos B, Ahmed SA (1992) Potential and limitations of energy-transfer processes in pulsed and cw dye laser mixtures: Comparison of theory and experiments. Appl Opt 31:7100-7107.
27. Pun C-C, Lee K, Kim H-J, Kim J (2006) Signal amplifying conjugated polymer-based solid-state DNA sensors. Macromolecules 39:7461-7463.
28. Seeman NC (2003) DNA in a material world. Nature 421:427-431.
29. Bath J, Turberfield AJ (2007) DNA nanomachines. Nat Nanotechnol 2:275-284.
30. Goodman RP, et al. (2008) Reconfigurable, braced, three dimensional DNA nanostructures. Nat Nanotechnol 3:93-96.
31. Liu J, Lu Y (2002) FRET study of a trifluorophore-labeled DNAzyme. J Am Chem Soc 124:15208-15216.
32. Shu D, MollW-D, Deng Z, Mao C, Guo P (2004) Bottom-up assembly of RNA arrays and superstructures as potential parts in nanotechnology. Nano Lett 4:1717-1723.
33. Xu Y, Piston DW, Johnson CH (1999) A bioluminescence resonance energy transfer (BRET) system: Application to interacting circadian clock proteins. Proc Natl Acad Sci USA 96:151-156.
34. Wang K, et al. (2008) Molecular engineering of DNA: Molecular beacons. Angew Chem Int Edit 47:2-17.
35. Rose A, Zhu Z, Madigan CF, Swager TM, Bulovi V (2005) Sensitivity gains in chemosensing by lasing action in organic polymers. Nature 434:876-879.
36. Wun AW, Snee PT, Chan Y, Bawendi MG, Nocera DG (2005) Non-linear transduction strategies for chemo/biosensing on small length scales. J Mater Chem 15:2697-2706.
37. Sumetsky M (2004) Whispering-gallery-bottle microcavities: The three-dimensional etalon. Opt Lett 29:8-10.
38. Louyer Y, Meschede D, Rauschenbeute A (2005) Tunable whispering-gallery- mode resonators for cavity quantum electrodynamics. Phys Rev A 72:031801(R).
39. Pöllinger M, O'Shea D, Warken F, Rauschenbeutel A (2009) Ultrahigh-Q tunable whispering-gallery-mode microresonator. Phys Rev Lett 103:053901.
40. Murugan GS, Wilkinson JS, Zervas MN (2009) Selective excitation of whispering gallery modes in a novel bottle microresonator. Opt Express 17:11916-11925.
41. Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucl Acids Res 31:3406-3415.