Genetic Diversity among offspring from archived Salmonella enterica ssp. enterica serovar Typhimurium (Demerec Collection): In search of survival strategies

Annual Review of Microbiology

Volumn 64, Issue , 2010, Pages 277-292

  Eisenstark, Abraham ^a  

^a UNIVERSITY OF MISSOURI   (United States)

Author keywords

bacteriophage; competition; evolution; life cycle; mutator genes; stationary phase

Indexed keywords

CARBON; NITROGEN;

ALLELE; BACTERIOPHAGE TYPING; CELL MOTILITY; CHROMOSOME; CONTROLLED STUDY; GENE DELETION; GENE DUPLICATION; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC STABILITY; GENETIC VARIABILITY; MICROARRAY ANALYSIS; NONHUMAN; OPERON; PHENOTYPE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROGENY; PROPHAGE; REVIEW; SALMONELLA ENTERICA; SALMONELLA TYPHIMURIUM; SEROTYPE; TANDEM REPEAT;

ADAPTATION, BIOLOGICAL; GENETIC VARIATION; GENOTYPE; MICROBIAL VIABILITY; PHENOTYPE; PRESERVATION, BIOLOGICAL; SALMONELLA TYPHIMURIUM;

SALMONELLA ENTERICA;

EID: 77957961027     PISSN: 00664227     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.micro.091208.073614     Document Type: Review

References (61)

1. Abedon ST, Herschler TD, Stopar D. 2001. Bacteriophage latent-period evolution as a response to resource availability. Appl. Environ. Microbiol. 67:4233-41
2. Ackermann M. 2008. Bacteria as a new model system for aging studies: investigations using light microscopy. Biotechniques 44:564-67
3. Ackermann M, Schauerte A, Stearns SC, Jenal U. 2007. Experimental evolution of aging in a bacterium. BMC Evol. Biol. 7:126-36
4. Akerlund T, Nordstrom K, Bernander R. 1995. Analysis of cell size and DNA content in exponentially growing and stationary-phase batch cultures of Escherichia coli. J. Bacteriol. 177:6791-97
5. Arber W. 2000. Genetic variation: molecular mechanisms and impact on microbial evolution. FEMS Microbiol. Rev. 24:1-7
6. Barrick JE, Lenski RE. 2009. Genome-wide mutational diversity in an evolving population of Escherichia coli. Cold Spring Harb. Symp. Quant. Biol. doi:10.1101/sqb.2009.74.018
7. Bayles KW. 2007. The biological role of death and lysis in biofilm development. Nat. Rev. Microbiol. 5:721-26
8. Bettelheim KA. 1982. Colony incompatibility studies among strains of Salmonella typhimurium phage type 199 isolated in connection with one outbreak. Zentralbl. Bakteriol. Mikrobiol. Hyg. A 252:340-46
9. Bettelheim KA, Carlile MJ. 1976. Colony incompatibility in bacteria. Nature 264:757-58
10. Bochner BR. 2009. Global phenotypic characterization of bacteria. FEMS Microbiol. Rev. 33:191-205
11. Bochner BR, Giovannetti L, Viti C. 2008. Important discoveries from analyzing bacterial phenotypes. Mol. Microbiol. 70:274-80
12. Bossi L, Fuentes JA, Mora G, Figueroa-Bossi N. 2003. Prophage contribution to bacterial population dynamics. J. Bacteriol. 185:6467-71
13. Cuny C, Dukan L, Fraysse L, Ballesteros M, Dukan S. 2005. Investigation of the first events leading to loss of culturability during Escherichia coli starvation: future nonculturable bacteria form a subpopulation. J. Bacteriol. 187:2244-48
14. Cuny C, Lesbats M, Dukan S. 2007. Induction of a global stress response during the first step of Escherichia coli plate growth. Appl. Environ. Microbiol. 73:885-89
15. Demerec M. 1958. Genetic structure of the Salmonella chromosome. X Int. Congr. Genet. 1:55-62
16. Edwards K, Linetsky I, Hueser C, Eisenstark A. 2001. Genetic variability among archival cultures of Salmonella typhimurium. FEMS Microbiol. Lett. 199:215-19
17. Eisenstark A, Calcutt MC, Becker-Hapak M, Ivanova A. 1996. Role of Escherichia coli rpoS and associated genes in defense against oxidative damage. Free Rad. Biol. Med. 21:975-93
18. Engelberg-Kulka H, Amitai S, Kolodkin-Gal I, Hazan R. 2006. Bacterial programmed cell death and multicellular behavior in bacteria. PLoS Genet. 2:e135
19. Erickson M, Newman D, Helm RA, Dino A, Calcutt M, et al. 2009. Competition among isolates of Salmonella enterica ssp. enterica serovar Typhimurium: role of prophage/phage in archived cultures. FEMS Microbiol. Lett. 294:37-44
20. Farrell MJ, Finkel SE. 2003. The growth advantage in stationary-phase phenotype conferred by rpoS mutations is dependent on the pH and nutrient environment. J. Bacteriol. 185:7044-52
21. Faure D, Frederick R, Wloch D, Portier P, Blot M, Adams J. 2004. Genomic changes arising in long-term stab cultures of Escherichia coli. J. Bacteriol. 186:6437-42
22. Felix A. 1956. Phage typing of Salmonella typhimurium: its place in epidemiological and epizootiological investigations. J. Gen. Microbiol. 14:208-22
23. Figueroa-Bossi N, Bossi L. 2004. Resuscitation of a defective prophage in Salmonella cocultures. J. Bacteriol. 186:4038-41
24. Figueroa-Bossi N, Coissac E, Netter P, Bossi L. 1997. Unsuspected prophage-like elements in Salmonella typhimurium. Mol. Microbiol. 25:161-73
25. Figueroa-Bossi N, Uzzau S, Maloriol D, Bossi L. 2001. Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella. Mol. Microbiol. 39:260-71
26. Finkel SE. 2006. Long-term survival during stationary phase: evolution and the GASP phenotype. Nat. Rev. Microbiol. 4:113-20
27. Finkel SE, Kolter R. 1999. Evolution of microbial diversity during prolonged starvation. Proc. Natl. Acad. Sci. USA 96:4023-27
28. Funchain P, Yeung A, Stewart J, Clendenin WM, Miller JH. 2001. Amplification of mutator cells in a population as a result of horizontal transfer. J. Bacteriol. 183:3737-41
29. Funchain P, Yeung A, Stewart JL, Lin R, Slupska MM, Miller JH. 2000. The consequences of growth of a mutator strain of Escherichia coli as measured by loss of function among multiple gene targets and loss of fitness. Genetics 154:959-70
30. Gong J, Liu WQ, Liu GR, Chen F, Li JQ, et al. 2007. Spontaneous conversion between mutL and 6 bpDeltamutL in Salmonella typhimurium LT7: association with genome diversification and possible roles in bacterial adaptation. Genomics 90:542-49
31. Helm RA, Lee AG, Christman HD, Maloy S. 2003. Genomic rearrangements at rrn operons in Salmonella. Genetics 165:951-59
32. Hendrix RW, Smith MC, Burns RN, Ford ME, Hatfull GF. 1999. Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage. Proc. Natl. Acad. Sci. USA 96:2192-97
33. Hillesland KL, Velicer GJ, Lenski RE. 2009. Experimental evolution of a microbial predator's ability to find prey. Proc. Biol. Sci. 276:459-67
34. Koch AL. 1996. Similarities and differences of individual bacteria within a clone. In Escherichia coli and Salmonella: Molecular and Cellular Biology, ed. FC Neidhardt, R Curtiss III, JL Ingraham, ECC Lin, KB Low, et al., pp. 1640-51. Washington, DC: ASM Press
35. Kolter R, Siegele D. 1993. The stationary phase of the bacterial life cycle. Annu. Rev. Microbiol. 47:855-74
36. Kropinski AM, Sulakvelidze A, Konczy P, Poppe C. 2007. Salmonella phages and prophages\-genomics and practical aspects. Methods Mol. Biol. 394:133-75
37. Le Chat L, Fons M, Taddei F. 2006. Escherichia coli mutators: selection criteria and migration effect. Microbiology 152:67-73
38. Lederberg J. 2000. The dawning of molecular genetics. Trends Microbiol. 8:194-95
39. Lenski RE, Winkworth CL, Riley MA. 2003. Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20000 generations. J. Mol. Evol. 56:498-508
40. Lilleengen K. 1950. Typing of Salmonella dublin and Salmonella enteritidis by means of bacteriophage. Acta Pathol. Microbiol. Scand. 27:625-40
41. Liu GR, Edwards K, Eisenstark A, Fu YM, Liu WQ, et al. 2003. Genomic diversification among archival strains of Salmonella enterica serovar Typhimurium LT7. J. Bacteriol. 185:2131-42
42. Liu SL, Hessel A, Cheng M, Sanderson KE. 1994. The XbaI-BlnI-CeuIgenomic cleavage map of Salmonella paratyphi B. J. Bacteriol. 176:1014-24
43. Naas T, Blot M, Fitch WM, Arber W. 1994. Insertion sequence-related genetic variation in resting Escherichia coli K-12. Genetics 136:721-30
44. Naas T, Blot M, Fitch WM, Arber W. 1995. Dynamics of IS-related genetic rearrangements in resting Escherichia coli K-12. Mol. Biol. Evol. 12:198-207
45. Nickerson CA, Curtiss R 3rd. 1997. Role of sigma factor RpoS in initial stages of Salmonella typhimurium infection. Infect. Immun. 65:1814-23
46. Nilsson AI, Koskiniemi S, Eriksson S, Kugelberg E, Hinton JC, Andersson DI. 2005. Bacterial genome size reduction by experimental evolution. Proc. Natl. Acad. Sci. USA 102:12112-16
47. Pelosi L, Kuhn L, Guetta D, Garin J, Geiselmann J, et al. 2006. Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli. Genetics 173:1851-69
48. Porwollik S, Wong RM, Helm RA, Edwards KK, Calcutt M, et al. 2004. DNA amplification and rearrangements in archival Salmonella enterica serovar Typhimurium LT2 cultures. J. Bacteriol. 186:1678-82
49. Rabsch W. 2007. Salmonella typhimurium phage typing for pathogens. Methods Mol. Biol. 394:177-211
50. Rabsch W, Helm RA, Eisenstark A. 2004. Diversity of phage types among archived cultures of the Demerec collection of Salmonella enterica serovar Typhimurium strains. Appl. Environ. Microbiol. 70:664-69
51. Rice KC, Bayles KW. 2008. Molecular control of bacterial death and lysis. Microbiol. Mol. Biol. Rev. 72:85-109
52. Sak BD, Eisenstark A, Touati D. 1989. Exonuclease III and the catalase hydroperoxidase II in Escherichia coli are both regulated by the katF gene product. Proc. Natl. Acad. Sci. USA 86:3271-75
53. Sanderson KE, Hessel A, Rudd KE. 1996. The genetic map of Salmonella typhimurium LT2, edition VIII. In Escherichia coli and Salmonella: Cellular and Molecular Biology, ed. FC Neidhardt, JL Ingraham, ECC Lin, KB Low, B Magasanik, et al., pp. 1903-99. Washington, DC: ASM Press. 2nd ed.
54. Selva L, Viana D, Regev-Yochay G, Trzcinski K, Corpa JM, et al. 2009. Killing niche competitors by remote-control bacteriophage induction. Proc. Natl. Acad. Sci. USA 106:1234-38
55. Shaver AC, Sniegowski PD. 2003. Spontaneously arising mutL mutators in evolving Escherichia coli populations are the result of changes in repeat length. J. Bacteriol. 185:6076-82
56. Sorek R, Kunin V, Hugenholtz P. 2008. CRISPR\-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat. Rev. Microbiol. 6:181-86
57. Spencer CC, Tyerman J, Bertrand M, Doebeli M. 2008. Adaptation increases the likelihood of diversification in an experimental bacterial lineage. Proc. Natl. Acad. Sci. USA 105:1585-89
58. Sutton A, Buencamino R, Eisenstark A. 2000. rpoS mutants in archival cultures of Salmonella enterica serovar Typhimurium. J. Bacteriol. 182:4375-79
59. Tracy BS, Edwards KK, Eisenstark A. 2002. Carbon and nitrogen substrate utilization by archival Salmonella typhimurium LT2 cells. BMC Evol. Biol. 2:14-19
60. Zhong Z, Kazmierczak RA, Dino A, Khreis R, Eisenstark A, Schatten H. 2007. Salmonella-host cell interactions, changes in host cell architecture, and destruction of prostate tumor cells with genetically altered Salmonella. Microsc. Microanal. 13:372-83
61. Zinder ND, Lederberg J. 1952. Genetic exchange in Salmonella. J. Bacteriol. 64:679-99