Domain structure elucidation of human decorin glycosaminoglycans

Biochemical Journal

Volumn 431, Issue 2, 2010, Pages 199-205

  Laremore, Tatiana N ^a   Ly, Mellisa ^a   Zhang, Zhenqing ^a   Solakyildirim, Kemal ^a   McCallum, Scott A ^b   Owens, Richard T ^c   Linhardt, Robert J ^a,b  

^a RENSSELAER POLYTECHNIC INSTITUTE   (United States)

^b RENSSELAER POLYTECHNIC INSTITUTE   (United States)

^c LIFECELL CORPORATION   (United States)

Author keywords

Decorin; Dermatan sulfate (DS); LC MS; Proteoglycan; Structural domain; Structural motif

Indexed keywords

DECORIN; DERMATAN SULFATE; LC-MS; PROTEOGLYCANS; STRUCTURAL DOMAINS; STRUCTURAL MOTIFS;

ACIDS; GLUCOSE; SPECTROSCOPIC ANALYSIS;

STRUCTURAL ANALYSIS;

DECORIN; DISACCHARIDE; GLUCURONIC ACID; GLYCOSAMINOGLYCAN; IDURONIC ACID; LYASE; POLYSACCHARIDE; PROTEOGLYCAN; SCLEROPROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOHYDRATE ANALYSIS; CONTROLLED STUDY; DEPOLYMERIZATION; ENZYMATIC DEGRADATION; HUMAN; HUMAN CELL; MASS SPECTROMETRY; NUCLEAR MAGNETIC RESONANCE; PHOTOMETRY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN MOTIF; PROTEIN STRUCTURE; AMINO ACID SEQUENCE; BIOSYNTHESIS; CHEMISTRY; LIQUID CHROMATOGRAPHY; MOLECULAR GENETICS; PROTEIN TERTIARY STRUCTURE;

AMINO ACID SEQUENCE; CHROMATOGRAPHY, LIQUID; DISACCHARIDES; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EXTRACELLULAR MATRIX PROTEINS; GLYCOSAMINOGLYCANS; HUMANS; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; PROTEOGLYCANS;

EID: 77957906379     PISSN: 02646021     EISSN: 14708728     Source Type: Journal    
DOI: 10.1042/BJ20100788     Document Type: Article

References (28)

1. Heinegard, D. (2009) Proteoglycans and more - from molecules to biology. Int. J. Exp. Pathol. 90, 575-586
2. Malavaki, C., Mizumoto, S., Karamanos, N. and Sugahara, K. (2008) Recent advances in the structural study of functional chondroitin sulfate and dermatan sulfate in health and disease. Connect. Tissue Res. 49, 133-139
3. Iozzo, R. V., Zoeller, J. J. and Nystrom, A. (2009) Basement membrane proteoglycans: modulators par excellence of cancer growth and angiogenesis. Mol. Cells 27, 503-513
4. Hocking, A. M., Shinomura, T. and Mcquillan, D. J. (1998) Leucine-rich repeat glycoproteins of the extracellular matrix. Matrix Biol. 17, 1-19
5. Fransson, L. A., Belting, M., Jonsson, M., Mani, K., Moses, J. and Oldberg, A. (2000) Biosynthesis of decorin and glypican. Matrix Biol. 19, 367-376
6. Seo, N. S., Hocking, A. M., Hook, M. and Mcquillan, D. J. (2005) Decorin core protein secretion is regulated by N-linked oligosaccharide and glycosaminoglycan additions. J. Biol. Chem. 280, 42774-42784
7. Ruoslahti, E. (1988) Structure and biology of proteoglycans. Annu. Rev. Cell Biol. 4, 229-255
8. Reed, C. C. and Iozzo, R. V. (2002) The role of decorin in collagen fibrillogenesis and skin homeostasis. Glycoconj. J. 19, 249-255
9. Seidler, D. G. and Dreier, R. (2008) Decorin and its galactosaminoglycan chain: extracellular regulator of cellular function? IUBMB Life 60, 729-733
10. Mcewan, P. A., Scott, P. G., Bishop, P. N. and Bella, J. (2006) Structural correlations in the family of small leucine-rich repeat proteins and proteoglycans. J. Struct. Biol. 155, 294-305
11. Kitagawa, H., Oyama, M., Masayama, K., Yamaguchi, Y. and Sugahara, K. (1997) Structural variations in the glycosaminoglycan-protein linkage region of recombinant decorin expressed in Chinese hamster ovary cells. Glycobiology 7, 1175-1180
12. Seidler, D. G., Peter-Katalinic, J. and Zamfir, A. D. (2007) Galactosaminoglycan function and oligosaccharide structure determination. Scientific World Journal 7, 233-241
13. Zamfir, A. D., Flangea, C., Sisu, E., Serb, A. F., Sinca, N., Bruckner, P and Seidler, D. G. (2009) Analysis of novel over- and under-sulfated glycosaminoglycan sequences by enzyme cleavage and multiple stage MS. Proteomics 9, 3435-3444
14. Chi, L., Wolff, J. J., Laremore, T. N., Restaino, O. F., Xie, J., Schiraldi, C., Toida, T., Amster, I. J. and Linhardt, R. J. (2008) Structural analysis of bikunin glycosaminoglycan. J. Am. Chem. Soc. 130, 2617-2625
15. Goldoni, S., Owens, R. T., McQuillan, D. J., Shriver, Z., Sasisekharan, R., Birk, D. E., Campbell, S. and Iozzo, R. V. (2004) Biologically active decorin is a monomer in solution. J. Biol. Chem. 279, 6606-6612
16. Laremore, T. N., Ly, M., Solakyildirim, K., Zagorevski, D. V. and Linhardt, R. J. (2010) High-resolution preparative separation of glycosaminoglycan oligosaccharides by polyacrylamide gel electrophoresis. Anal. Biochem. 401, 236-241
17. Laremore, T. N., Leach, F. E., Solakyildirim, K., Amster, I. J. and Linhardt, R. J. (2010), Glycosaminoglycan characterization by electrospray ionization mass spectrometry including Fourier transform mass spectrometry. Methods Enzymol. 478, 79-108
18. Ly, M., Wang, Z., Laremore, T. N., Zhang, F., Zhong, W., Pu, D., Zagorevski, D. V., Dordick, J.S. and Linhardt, R. J. (2010), Analysis of E. coliK5 capsular polysaccharide heparosan. Anal. Bioanal. Chem., in the press
19. Solakyildirim, K., Zhang, Z. and Linhardt, R. J. (2010) Ultraperformance liquid chromatography with electrospray ionization ion trap mass spectrometry for chondroitin disaccharide analysis. Anal. Biochem. 397, 24-28
20. Yum, D. Y., Chung, H. C., Bai, D. H., Oh, D. H. and Yu, J. H. (1994) Purification and characterization of alkaline serine protease from an alkalophlic Streptomyces sp. Biosci. Biotechnol. Biochem. 58, 470-474
21. Yoshida, N., Tsuruyama, S., Nagata, K., Noda, K. and Makisumi, S. (1988) Purification and characterization of an acidic amino acid specific endopeptidase of Streptomyces griseus obtained from a commercial preparation (Pronase). J. Biochem. 104, 451-456
22. Edens, R. E., Al-Hakim, A., Weiler, J. M., Rethwisch, D. G., Fareed, J. and Linhardt, R. J. (1992) Gradient polyacrylamide gel electrophoresis for determination of molecular weights of heparin preparations and low-molecular-weight heparin derivatives. J. Pharm. Sci. 81, 823-827
23. Jandik, K. A., Gu, K. and Linhardt, R. J. (1994) Action pattern of polysaccharide lyases on glycosaminoglycans. Glycobiology 4, 289-296
24. Guerrini, M., Naggi, A., Guglieri, S., Santarsiero, R. and Torri, G. (2005) Complex glycosaminoglycans: profiling substitution patterns by two-dimensional nuclear magnetic resonance spectroscopy. Anal. Biochem. 337, 35-47
25. Giraudeau, P., Guignard, N., Hillion, E., Baguet, E. and Akoka, S. (2007) Optimization of homonuclear 2D NMR for fast quantitative analysis: application to tropine-nortropine mixtures. J. Pharm. Biomed. Anal. 43, 1243-1248
26. 1H Nuclear magnetic resonance spectroscopic analysis for determination of glucuronic and iduronic acids in dermatan sulfate, heparin, and heparan sulfate. Anal. Biochem. 297, 42-51
27. Gu, K., Liu, J., Pervin, A. and Linhardt, R.J. (1993) Comparison of the activity of two chondroitin AC lyases on dermatan sulfate. Carbohydr. Res. 244, 369-77
28. Gu, K., Linhardt, R. J., Laliberte, M. and Zimmermann, J. (1995) Purification, characterization and specificity of chondroitin lyases and glycuronidase from Flavobacterium heparinum. Biochem. J. 312, 569-577