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Volumn 11, Issue 1, 2010, Pages

Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL TISSUE; ARTICLE; CHROMOSOME ANALYSIS; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENETIC TRAIT; GENOME ANALYSIS; LATISSIMUS DORSI MUSCLE; LINKAGE ANALYSIS; MEAT; MICROARRAY ANALYSIS; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRINCIPAL COMPONENT ANALYSIS; QUALITY CONTROL; QUANTITATIVE TRAIT LOCUS MAPPING; RNA TRANSCRIPTION; SWINE; ANIMAL; CHROMOSOME; CHROMOSOME MAP; DNA PROBE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; QUANTITATIVE TRAIT; QUANTITATIVE TRAIT LOCUS; SKELETAL MUSCLE; STANDARD;

EID: 77957897125     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-572     Document Type: Article
Times cited : (33)

References (30)
  • 1
    • 0035400051 scopus 로고    scopus 로고
    • Genetical genomics: the added value from segregation
    • 10.1016/S0168-9525(01)02310-1, 11418218
    • Jansen RC, Nap JP. Genetical genomics: the added value from segregation. Trends Genet 2001, 17:388-391. 10.1016/S0168-9525(01)02310-1, 11418218.
    • (2001) Trends Genet , vol.17 , pp. 388-391
    • Jansen, R.C.1    Nap, J.P.2
  • 2
    • 0037306536 scopus 로고    scopus 로고
    • Studying complex biological systems using multifactorial perturbation
    • 10.1038/nrg996, 12560811
    • Jansen RC. Studying complex biological systems using multifactorial perturbation. Nat Rev Genet 2003, 4:145-151. 10.1038/nrg996, 12560811.
    • (2003) Nat Rev Genet , vol.4 , pp. 145-151
    • Jansen, R.C.1
  • 4
    • 19844366096 scopus 로고    scopus 로고
    • Cis-acting expression quantitative trait loci in mice
    • 10.1101/gr.3216905, 1088296, 15837804
    • Doss S, Schadt EE, Drake TA, Lusis AJ. Cis-acting expression quantitative trait loci in mice. Genome Res 2005, 15:681-691. 10.1101/gr.3216905, 1088296, 15837804.
    • (2005) Genome Res , vol.15 , pp. 681-691
    • Doss, S.1    Schadt, E.E.2    Drake, T.A.3    Lusis, A.J.4
  • 5
    • 51249085231 scopus 로고    scopus 로고
    • Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle
    • 10.1186/1471-2164-9-367, 2529315, 18671879
    • Ponsuksili S, Jonas E, Murani E, Phatsara C, Srikanchai T, Walz C, Schwerin M, Schellander K, Wimmers K. Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle. BMC Genomics 2008, 9:367. 10.1186/1471-2164-9-367, 2529315, 18671879.
    • (2008) BMC Genomics , vol.9 , pp. 367
    • Ponsuksili, S.1    Jonas, E.2    Murani, E.3    Phatsara, C.4    Srikanchai, T.5    Walz, C.6    Schwerin, M.7    Schellander, K.8    Wimmers, K.9
  • 6
    • 77953264605 scopus 로고    scopus 로고
    • Annotation and in silico localization of the Affymetrix GeneChip Porcine Genome Array
    • Naraballobh W, Chomdej S, Murani E, Wimmers K, Ponsuksili S. Annotation and in silico localization of the Affymetrix GeneChip Porcine Genome Array. Arch Tierz 2010, 53:230-238.
    • (2010) Arch Tierz , vol.53 , pp. 230-238
    • Naraballobh, W.1    Chomdej, S.2    Murani, E.3    Wimmers, K.4    Ponsuksili, S.5
  • 7
    • 77955922406 scopus 로고    scopus 로고
    • Expression quantitative trait loci analysis of genes in porcine muscle by quantitative real time RT-PCR compared to microarray data
    • Ponsuksili S, Murani E, Phatsara C, Schwerin M, Schellander K, Wimmers K. Expression quantitative trait loci analysis of genes in porcine muscle by quantitative real time RT-PCR compared to microarray data. Heredity 2010,
    • (2010) Heredity
    • Ponsuksili, S.1    Murani, E.2    Phatsara, C.3    Schwerin, M.4    Schellander, K.5    Wimmers, K.6
  • 8
    • 2142813402 scopus 로고    scopus 로고
    • Affymetrix GeneChip Expression Analysis
    • Affymetrix, Santa Clara, CA, Affymetrix Technical Manual
    • Affymetrix Technical Manual Affymetrix GeneChip Expression Analysis. 2001, Affymetrix, Santa Clara, CA, Affymetrix Technical Manual.
    • (2001)
  • 9
    • 33745322791 scopus 로고    scopus 로고
    • Guide to Probe Logarithmic Intensity Error (PLIER) Estimation
    • Affymetrix, Santa Clara, CA, Affymetrix Technical Note
    • Affymetrix Technical Note Guide to Probe Logarithmic Intensity Error (PLIER) Estimation. 2005, Affymetrix, Santa Clara, CA, Affymetrix Technical Note.
    • (2005)
  • 10
    • 0028877463 scopus 로고
    • Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results
    • 10.1038/ng1195-241, 7581446
    • Lander E, Kruglyak L. Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results. Nat Genet 1995, 11:241-247. 10.1038/ng1195-241, 7581446.
    • (1995) Nat Genet , vol.11 , pp. 241-247
    • Lander, E.1    Kruglyak, L.2
  • 11
    • 0026882188 scopus 로고
    • Development of a quantitative quality grading system for mature cow carcasses
    • Hodgson RR, Belk KE, Savell JW, Cross HR, Williams FL. Development of a quantitative quality grading system for mature cow carcasses. J Anim Sci 1992, 70:1840-1847.
    • (1992) J Anim Sci , vol.70 , pp. 1840-1847
    • Hodgson, R.R.1    Belk, K.E.2    Savell, J.W.3    Cross, H.R.4    Williams, F.L.5
  • 12
    • 34249804774 scopus 로고    scopus 로고
    • A genome scan reveals QTL for growth, fatness, leanness and meat quality in a Duroc-Pietrain resource population
    • 10.1111/j.1365-2052.2007.01592.x, 17459017
    • Liu G, Jennen DG, Tholen E, Juengst H, Kleinwächter T, Hölker M, et al. A genome scan reveals QTL for growth, fatness, leanness and meat quality in a Duroc-Pietrain resource population. Anim Genet 2007, 38:241-252. 10.1111/j.1365-2052.2007.01592.x, 17459017.
    • (2007) Anim Genet , vol.38 , pp. 241-252
    • Liu, G.1    Jennen, D.G.2    Tholen, E.3    Juengst, H.4    Kleinwächter, T.5    Hölker, M.6
  • 13
    • 70350020375 scopus 로고    scopus 로고
    • Porcine muscle sensory attributes associate with major changes in gene networks involving CAPZB, ANKRD1, and CTBP2
    • 10.1007/s10142-009-0131-1, 19597856
    • Ponsuksili S, Murani E, Phatsara C, Schwerin M, Schellander K, Wimmers K. Porcine muscle sensory attributes associate with major changes in gene networks involving CAPZB, ANKRD1, and CTBP2. Funct Integr Genomics 2009, 9:455-471. 10.1007/s10142-009-0131-1, 19597856.
    • (2009) Funct Integr Genomics , vol.9 , pp. 455-471
    • Ponsuksili, S.1    Murani, E.2    Phatsara, C.3    Schwerin, M.4    Schellander, K.5    Wimmers, K.6
  • 14
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • 10.1126/science.1069516, 11923494
    • Brem RB, Yvert G, Clinton R, Kruglyak L. Genetic dissection of transcriptional regulation in budding yeast. Science 2002, 296:752-755. 10.1126/science.1069516, 11923494.
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1    Yvert, G.2    Clinton, R.3    Kruglyak, L.4
  • 15
    • 0042856391 scopus 로고    scopus 로고
    • Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
    • 10.1038/ng1222, 12897782
    • Yvert G, Brem RB, Whittle J, Akey JM, Foss E, Smith EN, et al. Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors. Nat Genet 2003, 35:57-64. 10.1038/ng1222, 12897782.
    • (2003) Nat Genet , vol.35 , pp. 57-64
    • Yvert, G.1    Brem, R.B.2    Whittle, J.3    Akey, J.M.4    Foss, E.5    Smith, E.N.6
  • 16
    • 4043128071 scopus 로고    scopus 로고
    • Genetic analysis of genome-wide variation in human gene expression
    • 10.1038/nature02797, 15269782
    • Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, Spielman RS, et al. Genetic analysis of genome-wide variation in human gene expression. Nature 2004, 430:743-747. 10.1038/nature02797, 15269782.
    • (2004) Nature , vol.430 , pp. 743-747
    • Morley, M.1    Molony, C.M.2    Weber, T.M.3    Devlin, J.L.4    Ewens, K.G.5    Spielman, R.S.6
  • 17
    • 34548719076 scopus 로고    scopus 로고
    • Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes
    • 10.1038/ng2119, 17873875
    • Göring HH, Curran JE, Johnson MP, Dyer TD, Charlesworth J, Cole SA, et al. Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes. Nat Genet 2007, 39:1208-1216. 10.1038/ng2119, 17873875.
    • (2007) Nat Genet , vol.39 , pp. 1208-1216
    • Göring, H.H.1    Curran, J.E.2    Johnson, M.P.3    Dyer, T.D.4    Charlesworth, J.5    Cole, S.A.6
  • 20
    • 20144383240 scopus 로고    scopus 로고
    • Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'
    • 10.1038/ng1497, 15711547
    • Bystrykh L, Weersing E, Dontje B, Sutton S, Pletcher MT, Wiltshire T, et al. Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'. Nat Genet 2005, 37:225-232. 10.1038/ng1497, 15711547.
    • (2005) Nat Genet , vol.37 , pp. 225-232
    • Bystrykh, L.1    Weersing, E.2    Dontje, B.3    Sutton, S.4    Pletcher, M.T.5    Wiltshire, T.6
  • 21
    • 27644549928 scopus 로고    scopus 로고
    • Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits
    • 10.1038/ng1619, 16200066
    • Mehrabian M, Allayee H, Stockton J, Lum PY, Drake TA, Castellani LW, Suh M, Armour C, Edwards S, Lamb J, Lusis AJ, Schadt EE. Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits. Nat Genet 2005, 37:1224-1233. 10.1038/ng1619, 16200066.
    • (2005) Nat Genet , vol.37 , pp. 1224-1233
    • Mehrabian, M.1    Allayee, H.2    Stockton, J.3    Lum, P.Y.4    Drake, T.A.5    Castellani, L.W.6    Suh, M.7    Armour, C.8    Edwards, S.9    Lamb, J.10    Lusis, A.J.11    Schadt, E.E.12
  • 23
    • 77953956761 scopus 로고    scopus 로고
    • Functional genomics and genetical genomics approaches towards elucidating networks of genes affecting meat performance in pigs
    • Wimmers K, Murani E, Ponsuksili S. Functional genomics and genetical genomics approaches towards elucidating networks of genes affecting meat performance in pigs. Brief Funct Genomics 2010, 9:251-258.
    • (2010) Brief Funct Genomics , vol.9 , pp. 251-258
    • Wimmers, K.1    Murani, E.2    Ponsuksili, S.3
  • 24
    • 77954393668 scopus 로고    scopus 로고
    • Serious limitations of the QTL/microarray approach for QTL gene discovery
    • 10.1186/1741-7007-8-96, 2919467, 20624276
    • Verdugo A, Farber CR, Warden CH, Medrano JF. Serious limitations of the QTL/microarray approach for QTL gene discovery. BMC Biology 2010, 8:96. 10.1186/1741-7007-8-96, 2919467, 20624276.
    • (2010) BMC Biology , vol.8 , pp. 96
    • Verdugo, A.1    Farber, C.R.2    Warden, C.H.3    Medrano, J.F.4
  • 25
    • 34249806489 scopus 로고    scopus 로고
    • Richtlinie fuer die Stationspruefung auf Mastleistung, Schlachtkoerperwert und Fleischbeschaffenheit beim Schwein
    • Bonn, Germany, ZDS, Zentral Verband der Deutschen Schweineproduktion e. V
    • ZDS, Zentral Verband der Deutschen Schweineproduktion e. V Richtlinie fuer die Stationspruefung auf Mastleistung, Schlachtkoerperwert und Fleischbeschaffenheit beim Schwein. 2003, Bonn, Germany, ZDS, Zentral Verband der Deutschen Schweineproduktion e. V.
    • (2003)
  • 26
    • 34748835472 scopus 로고
    • Wasserbindungsvermögen von Fleisch
    • Honikel KO. Wasserbindungsvermögen von Fleisch. Mitteilungsblatt der BAFF 1986, 6:7150-7154.
    • (1986) Mitteilungsblatt der BAFF , vol.6 , pp. 7150-7154
    • Honikel, K.O.1
  • 28
    • 84870532154 scopus 로고    scopus 로고
    • Gene Expression Omnibus
    • Gene Expression Omnibus. , http://www.ncbi.nlm.nih.gov/geo/
  • 29
    • 0036184839 scopus 로고    scopus 로고
    • QTL Express: mapping quantitative trait loci in simple and complex pedigrees
    • 10.1093/bioinformatics/18.2.339, 11847090
    • Seaton G, Haley CS, Knott SA, Kearsey M, Visscher PM. QTL Express: mapping quantitative trait loci in simple and complex pedigrees. Bioinformatics 2002, 18:339-340. 10.1093/bioinformatics/18.2.339, 11847090.
    • (2002) Bioinformatics , vol.18 , pp. 339-340
    • Seaton, G.1    Haley, C.S.2    Knott, S.A.3    Kearsey, M.4    Visscher, P.M.5
  • 30
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • 1206241, 7851788
    • Churchill GA, Doerge RW. Empirical threshold values for quantitative trait mapping. Genetics 1994, 138:963-971. 1206241, 7851788.
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2


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