TFInfer: A tool for probabilistic inference of transcription factor activities

Bioinformatics

Volumn 26, Issue 20, 2010, Pages 2635-2636

  Shahzad Asif, H M ^a   Rolfe, Matthew D ^b   Green, Jeff ^b   Lawrence, Neil D ^c   Rattray, Magnus ^c   Sanguinetti, Guido ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF SHEFFIELD   (United Kingdom)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI;

TRANSCRIPTION FACTOR;

ARTICLE; BIOLOGY; CHEMISTRY; COMPUTER PROGRAM; ESCHERICHIA COLI; FACTUAL DATABASE; GENE EXPRESSION; METABOLISM; STATISTICAL MODEL; YEAST;

COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; ESCHERICHIA COLI; GENE EXPRESSION; MODELS, STATISTICAL; SOFTWARE; TRANSCRIPTION FACTORS; YEASTS;

EID: 77957782480     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq469     Document Type: Article

References (5)

1. Davidge,K.S. et al. (2009) Carbon monoxide-releasing antibacterial molecules target respiration and global transcriptional regulators. J. Biol. Chem., 284, 4516-4524.
2. McLean,S. et al. (2010) Peroxynitrite toxicity in Escherichia coli K-12 elicits expression of oxidative stress responses, and protein nitration and nitrosylation. J. Biol. Chem., 285, 20724-20731.
3. Partridge,J.D. et al. (2007) Transition of Escherichia coli from aerobic to micro-aerobic conditions involves fast and slow reacting regulatory components. J. Biol. Chem., 282, 11230-11237.
4. Sabatti,C. and James,G. (2006) Bayesian sparse hidden components analysis for transcription regulation networks. Bioinformatics, 22, 739-746.
5. Sanguinetti,G. et al. (2006) Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities. Bioinformatics, 22, 2775-2781.