An order-disorder transition plays a role in switching off the root effect in fish hemoglobins

Journal of Biological Chemistry

Volumn 285, Issue 42, 2010, Pages 32568-32575

  Vergara, Alessandro ^a,b   Vitagliano, Luigi ^b   Merlino, Antonello ^a,b   Sica, Filomena ^a,b   Marino, Katia ^a,c   Verde, Cinzia ^c   Di Prisco, Guido ^c   Mazzarella, Lelio ^a,b  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b CNR   (Italy)

^c INSTITUTE OF PROTEIN BIOCHEMISTRY   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STATE; ELECTRON DENSITIES; HEME IRON; IN-LINE; MICRO SPECTROSCOPY; ROOT EFFECT; SIDE CHAINS; SPECTROSCOPIC CHARACTERIZATION; STRUCTURAL BASIS; TETRAMERS;

CRYSTAL STRUCTURE; FISH; PORPHYRINS;

HEMOGLOBIN;

ASPARTIC ACID; HEMOGLOBIN; HISTIDINE; IRON;

ALPHA CHAIN; ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; FISH; HYDROGEN BOND; NONHUMAN; PRIORITY JOURNAL; PROTEIN STABILITY; PROTEIN STRUCTURE; RAMAN SPECTROMETRY;

ANIMALS; CRYSTALLOGRAPHY, X-RAY; FISHES; HEMOGLOBINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; SPECTRUM ANALYSIS, RAMAN;

TREMATOMUS NEWNESI;

EID: 77957778513     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.143537     Document Type: Article

References (38)

1. Brittain, T. (1987) Comp. Biochem. Physiol. Part B: Biochem. Mol. Biol. 86, 473-481
2. Brittain, T. (2005) J. Inorg. Biochem. 99, 120-129
3. Verde, C., Vergara, A., Mazzarella, L., and di Prisco, L. (2008) Curr. Prot. Pept. Sci. 9, 578-590
4. Berenbrink, M., Koldkjaer, P., Kepp, O., and Cossins, A. R. (2005) Science 307, 1752-1757
5. Bonaventura, C., Crumbliss, A. L., and Weber, R. E. (2004) Acta Physiol. Scand. 182, 245-258
6. Yokoyama, T., Chong, K. T., Miyazaki, G., Morimoto, H., Shih, D. T., Unzai, S., Tame, J. R., and Park, S. Y. (2004) J. Biol. Chem. 279, 28632-28640
7. Unzai, S., Imai, K., Park, S.-Y., Nagai, K., Brittain, T., and Tame, J. R. (eds) (2008) Mutagenic Studies on the Origins of the Root Effect, Springer, Milan
8. Vergara, A., Franzese, M., Merlino, A., Bonomi, G., Verde, C., Giordano, D., di Prisco, G., Lee, H. C., Peisach, J., and Mazzarella, L. (2009) Biophys. J. 97, 866-874
9. Perutz, M. F. (1996) Nat. Struct. Biol. 3, 211-212
10. Ito, N., Komiyama, N. H., and Fermi, G. (1995) J. Mol. Biol. 250, 648-658
11. Mylvaganam, S. E., Bonaventura, C., Bonaventura, J., and Getzoff, E. D. (1996) Nat. Struct. Biol. 3, 275-283
12. Camardella, L., Caruso, C., D'Avino, R., di Prisco, G., Rutigliano, B., Tamburrini, M., Fermi, G., and Perutz, M. F. (1992) J. Mol. Biol. 224, 449-460
13. D'Avino, R., Caruso, C., Tamburrini, M., Romano, M., Rutigliano, B., Polverino de Laureto, P., Camardella, L., Carratore, V., and di Prisco, G. (1994) J. Biol. Chem. 269, 9675-9681
14. Mazzarella, L., D'Avino, R., di Prisco, G., Savino, C., Vitagliano, L., Moody, P. C., and Zagari, A. (1999) J. Mol. Biol. 287, 897-906
15. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
16. Navaza, J. (1994) Acta Crystallogr. A50, 157-163
17. Sheldrick, G., and Schneider, T. (1997) Methods Enzymol. 277, 319-343
18. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjedgaard, M. (1991) Acta Crystallogr. Sect. D: Biol. Cryst. 56, 714-721
19. Mazzarella, L., Vergara, A., Vitagliano, L., Merlino, A., Bonomi, G., Scala, S., Verde, C., and di Prisco, G. (2006) Proteins: Struct. Funct. Bioinformatics 65, 490-498
20. Riccio, A., Vitagliano, L., di Prisco, G., Zagari, A., and Mazzarella, L. (2001) Acta Cryst. D: Biol. Cryst. 57, 1144-1146
21. Mazzarella, L., Bonomi, G., Lubrano, M. C., Merlino, A., Riccio, A., Vergara, A., Vitagliano, L., Verde, C., and di Prisco, G. (2006) Proteins: Struct. Funct. Bioinformatics 62, 316-321
22. Vitagliano, L., Vergara, A., Bonomi, G., Merlino, A., Verde, C., di Prisco, G., Howes, B. D., Smulevich, G., and Mazzarella, L. (2008) J. Am. Chem. Soc 130, 10527-10535
23. Baldwin, J., and Chothia, C. (1979) J. Mol. Biol. 129, 175-220
24. Park, S. Y., Yokoyama, T., Shibayama, N., Shiro, Y., and Tame, J. R. (2006) J. Mol. Biol. 360, 690-701
25. Tame, J. R., Wilson, J. C., and Weber, R. E. (1996) J. Mol. Biol. 259, 749-760
26. Perutz, M. (1970) Nature 228, 734-739
27. Perutz, M. F. (1980) Proc. Royal Society London, Series B: Biol. Sci. 208, 135-162
28. Giordano, D., Boechi, L., Vergara, A., Martí, M. A., Samuni, U., Dantsker, D., Grassi, L., Estrin, D. A., Friedman, J. M., Mazzarella, L., di Prisco, G., and Verde, C. (2009) FEBS J. 276, 2266-2277
29. Merlino, A., Vergara, A., Sica, F., Aschi, M., Amedei, A., Di Nola, A., and Mazzarella, L. (2010) J. Phys. Chem. B 114, 7002-7008
30. Merlino, A., Vergara, A., Sica, F., and Mazzarella, L. (2009) Marine Genomics 2, 51-56
31. Riccio, A., Vitagliano, L., di Prisco, G., Zagari, A., and Mazzarella, L. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 9801-9806
32. Choi, S., Spiro, T. G., Langry, K. C., Smith, K. M., Budd, D. L., and La Mar, G. N. (1982) J. Am. Chem. Soc. 104, 4345-4351
33. Merlino, A., Vitagliano, L., Howes, B. D., Verde, C., di Prisco, G., Smulevich, G., Sica, F., and Vergara, A. (2009) Biopolymers 91, 1117-1125
34. Merlino, A., Verde, C., di Prisco, G., Mazzarella, L., and Vergara, A. (2008) Spectroscopy 22, 143-152
35. Vergara, A., Vitagliano, L., Verde, C., di Prisco, G., and Mazzarella, L. (2008) Methods Enzymol. 436, 421-440
36. Verde, C., Howes, B. D., de Rosa, M. C., Raiola, L., Smulevich, G., Williams, R., Giardina, B., Parisi, E., and di Prisco, G. (2004) Protein Sci. 13, 2766-2781
37. Smulevich, G., Possenti, M., D'Avino, R., di Prisco, G., and Coletta, M. (1998) J. Raman Spectroscopy 29, 57-65
38. Giangiacomo, L., D'Avino, R., di Prisco, G., and Chiancone, E. (2001) Biochemistry 40, 3062-3068