Coexistence of copy number increases of ZNF217 and CYP24A1 in colorectal cancers in a chinese population

Oncology Letters

Volumn 1, Issue 5, 2010, Pages 925-930

  Fang, Zhengyu ^a   Xiong, Yi ^a   Zhang, Chao ^a   Li, Jiana ^a   Liu, Li ^a   Li, Manhui ^a   Zhang, Wei ^b   Wan, Jun ^a  

^a PEKING UNIVERSITY   (China)

^b JINAN UNIVERSITY   (China)

Author keywords

25 hydroxy vitamin d3 24 hydroxylase; Colorectal cancer; Copy number variation; Zinc finger protein 217

Indexed keywords

25 HYDROXY VITAMIN D3 24 HYDROXYLASE; MESSENGER RNA; OXYGENASE; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; ZINC FINGER PROTEIN 217;

ARTICLE; CHINESE; COLORECTAL CANCER; GENE AMPLIFICATION; GENE DOSAGE; GENE EXPRESSION; GENETIC VARIABILITY; GENOTYPE; HUMAN; ONCOGENE; PHENOTYPE;

EID: 77957608982     PISSN: 17921074     EISSN: 17921082     Source Type: Journal    
DOI: 10.3892/ol_00000163     Document Type: Article

References (39)

1. Lichtenstein P, Holm NV, Verkasalo PK, Iliadou A, Kaprio J, Koskenvuo M, Pukkala E, Skytthe A and Hemminki K: Environmental and heritable factors in the causation of cancer-analyses of cohorts of twins from Sweden, Denmark, and Finland. N Engl J Med 343: 78-85, 2000.
2. Pinkel D and Albertson DG: Comparative genomic hybridization. Annu Rev Genomics Hum Genet 6: 331-354, 2005.
3. Hupe P, Stransky N, Thiery JP, Radvanyi F and Barillot E: Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. Bioinformatics 20: 3413-3422, 2004.
4. Andrews J, Kennette W, Pilon J, Hodgson A, Tuck AB, Chambers AF and Rodenhiser DI: Multi-platform whole-genome microarray analyses refine the epigenetic signature of breast cancer metastasis with gene expression and copy number. PLoS One 5: e8665, 2010.
5. Diskin SJ, Hou C, Glessner JT, et al: Copy number variation at 1q21.1 associated with neuroblastoma. Nature 459: 987-991, 2009.
6. Liu W, Sun J, Li G, et al: Association of a germ-line copy number variation at 2p24.3 and risk for aggressive prostate cancer. Cancer Res 69: 2176-2179, 2009.
7. Nakao K, Mehta KR, Fridlyand J, Moore DH, Jain AN, Lafuente A, Wiencke JW, Terdiman JP and Waldman FM: High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization. Carcinogenesis 25: 1345-1357, 2004.
8. Ashktorab H, Schaffer AA, Daremipouran M, Smoot DT, Lee E and Brim H: Distinct genetic alterations in colorectal cancer. PLoS One 5: e8879, 2010.
9. Carvalho B, Postma C, Mongera S, et al: Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression. Gut 58: 79-89, 2009.
10. De Angelis PM, Stokke T, Beigi M, et al: Chromosomal 20q gain in the DNA diploid component of aneuploid colorectal carcinomas. Int J Cancer 120: 2734-2738, 2007.
11. Aust DE, Muders M, Kohler A, Schmidt M, Diebold J, Muller C, Lohrs U, Waldman FM and Baretton GB: Prognostic relevance of 20q13 gains in sporadic colorectal cancers: a FISH analysis. Scand J Gastroenterol 39: 766-772, 2004.
12. Postma C, Terwischa S, Hermsen MA, van der Sijp JR and Meijer GA: Gain of chromosome 20q is an indicator of poor prognosis in colorectal cancer. Cell Oncol 29: 73-75, 2007.
13. Hidaka S, Yasutake T, Takeshita H, Kondo M, Tsuji T, Nanashima A, Sawai T, Yamaguchi H, Nakagoe T, Ayabe H and Tagawa Y: Differences in 20q13.2 copy number between colorectal cancers with and without liver metastasis. Clin Cancer Res 6: 2712-2717, 2000.
14. Dear PH: Copy-number variation: the end of the human genome? Trends Biotechnol 27: 448-454, 2009.
15. John T, Liu G and Tsao MS: Overview of molecular testing in non-small-cell lung cancer: mutational analysis, gene copy number, protein expression and other biomarkers of EGFR for the prediction of response to tyrosine kinase inhibitors. Oncogene 28 (Suppl 1): 14-23, 2009.
16. Sanchez-Cespedes M: The impact of gene expression microarrays in the evaluation of lung carcinoma subtypes and DNA copy number. Arch Pathol Lab Med 132: 1562-1565, 2008.
17. Speleman F, Kumps C, Buysse K, Poppe B, Menten B and De Preter K: Copy number alterations and copy number variation in cancer: close encounters of the bad kind. Cytogenet Genome Res 123: 176-182, 2008.
18. Venkatachalam R, Ligtenberg MJ, Hoogerbrugge N, Geurts van Kessel A and Kuiper RP: Predisposition to colorectal cancer: exploiting copy number variation to identify novel predisposing genes and mechanisms. Cytogenet Genome Res 123: 188-194, 2008.
19. Rooney PH, Boonsong A, McFadyen MC, McLeod HL, Cassidy J, Curran S and Murray GI: The candidate oncogene ZNF217 is frequently amplified in colon cancer. J Pathol 204: 282-288, 2004.
20. Horvath HC, Lakatos P, Kosa JP, Bacsi K, Borka K, Bises G, Nittke T, Hershberger PA, Speer G and Kallay E: The candidate oncogene CYP24A1: A potential biomarker for colorectal tumorigenesis. J Histochem Cytochem 58: 277-285, 2010.
21. McCullough ML, Bostick RM and Mayo TL: Vitamin D gene pathway polymorphisms and risk of colorectal, breast, and prostate cancer. Annu Rev Nutr 29: 111-132, 2009.
22. Li P, Maines-Bandiera S, Kuo WL, Guan Y, Sun Y, Hills M, Huang G, Collins CC, Leung PC, Gray JW and Auersperg N: Multiple roles of the candidate oncogene ZNF217 in ovarian epithelial neoplastic progression. Int J Cancer 120: 1863-1873, 2007.
23. Quinlan KG, Verger A, Yaswen P and Crossley M: Amplification of zinc finger gene 217 (ZNF217) and cancer: when good fingers go bad. Biochim Biophys Acta 1775: 333-340, 2007.
24. King AN, Beer DG, Christensen PJ, Simpson RU and Ramnath N: The vitamin D/CYP24A1 story in cancer. Anticancer Agents Med Chem 10: 213-224, 2010.
25. Barnetson RA, Tenesa A, Farrington SM, Nicholl ID, Cetnarskyj R, Porteous ME, Campbell H and Dunlop MG: Identification and survival of carriers of mutations in DNA mismatch-repair genes in colon cancer. N Engl J Med 354: 2751-2763, 2006.
26. Tenesa A, Campbell H, Barnetson R, Porteous M, Dunlop M and Farrington SM: Association of MUTYH and colorectal cancer. Br J Cancer 95: 239-242, 2006.
27. Shlien A, Tabori U, Marshall CR, Pienkowska M, Feuk L, Novokmet A, Nanda S, Druker H, Scherer SW and Malkin D: Excessive genomic DNA copy number variation in the Li-Fraumeni cancer predisposition syndrome. Proc Natl Acad Sci USA 105: 11264-11269, 2008.
28. Grubor V, Krasnitz A, Troge JE, et al: Novel genomic alterations and clonal evolution in chronic lymphocytic leukemia revealed by representational oligonucleotide microarray analysis (ROMA). Blood 113: 1294-1303, 2009.
29. Gunnarsson R, Staaf J, Jansson M, et al: Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia - a comparative study of four differently designed, high resolution microarray platforms. Genes Chromosomes Cancer 47: 697-711, 2008.
30. Schafer M, Schwender H, Merk S, Haferlach C, Ickstadt K and Dugas M: Integrated analysis of copy number alterations and gene expression: a bivariate assessment of equally directed abnormalities. Bioinformatics 25: 3228-3235, 2009.
31. Strefford JC, van Delft FW, Robinson HM, et al: Complex genomic alterations and gene expression in acute lymphoblastic leukemia with intrachromosomal amplification of chromosome 21. Proc Natl Acad Sci USA 103: 8167-8172, 2006.
32. Sulong S, Moorman AV, Irving JA, et al: A comprehensive analysis of the CDKN2A gene in childhood acute lymphoblastic leukemia reveals genomic deletion, copy number neutral loss of heterozygosity, and association with specific cytogenetic subgroups. Blood 113: 100-107, 2009.
33. Ionita-Laza I, Rogers AJ, Lange C, Raby BA and Lee CI: Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis. Genomics 93: 22-26, 2009.
34. Henrichsen CN, Chaignat E and Reymond A: Copy number variants, diseases and gene expression. Hum Mol Genet 18: R1-R8, 2009.
35. Dermitzakis ET and Stranger BE: Genetic variation in human gene expression. Mamm Genome 17: 503-508, 2006.
36. Reymond A, Henrichsen CN, Harewood L and Merla G: Side effects of genome structural changes. Curr Opin Genet Dev 17: 381-386, 2007.
37. Guryev V, Saar K, Adamovic T, et al: Distribution and functional impact of DNA copy number variation in the rat. Nat Genet 40: 538-545, 2008.
38. Henrichsen CN, Vinckenbosch N, Zollner S, Chaignat E, Pradervand S, Schutz F, Ruedi M, Kaessmann H and Reymond A: Segmental copy number variation shapes tissue transcriptomes. Nat Genet 41: 424-429, 2009.
39. Sexton T, Umlauf D, Kurukuti S and Fraser P: The role of transcription factories in large-scale structure and dynamics of interphase chromatin. Semin Cell Dev Biol 18: 691-697, 2007.