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Volumn 7, Issue , 2010, Pages

HIV-1 subtype distribution in the Gambia and the significant presence of CRF49_cpx, a novel circulating recombinant form

Author keywords

[No Author keywords available]

Indexed keywords

ANTIRETROVIRUS AGENT; CIRCULATING RECOMBINANT FACTOR 49; GAG PROTEIN; HUMAN IMMUNODEFICIENCY VIRUS PROTEIN; UNCLASSIFIED DRUG; VIRUS RNA; VIRUS ENVELOPE PROTEIN;

EID: 77957597709     PISSN: None     EISSN: 17424690     Source Type: Journal    
DOI: 10.1186/1742-4690-7-82     Document Type: Article
Times cited : (13)

References (45)
  • 3
    • 84873805246 scopus 로고    scopus 로고
    • Los Alamos HIV Database
    • Los Alamos HIV Database. , http://www.hiv.lanl.gov/
  • 5
    • 77949264937 scopus 로고    scopus 로고
    • Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys
    • 10.1038/nm.2108, 2834806, 20173754
    • Santra S, Liao HX, Zhang R, Muldoon M, Watson S, Fischer W, Theiler J, Szinger J, Balachandran H, Buzby A, et al. Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys. Nat Med 16:324-328. 10.1038/nm.2108, 2834806, 20173754.
    • Nat Med , vol.16 , pp. 324-328
    • Santra, S.1    Liao, H.X.2    Zhang, R.3    Muldoon, M.4    Watson, S.5    Fischer, W.6    Theiler, J.7    Szinger, J.8    Balachandran, H.9    Buzby, A.10
  • 6
    • 41949124934 scopus 로고    scopus 로고
    • Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing
    • 10.1128/JVI.02660-07, 2293010, 18256145
    • Salazar-Gonzalez JF, Bailes E, Pham KT, Salazar MG, Guffey MB, Keele BF, Derdeyn CA, Farmer P, Hunter E, Allen S, et al. Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing. J Virol 2008, 82:3952-3970. 10.1128/JVI.02660-07, 2293010, 18256145.
    • (2008) J Virol , vol.82 , pp. 3952-3970
    • Salazar-Gonzalez, J.F.1    Bailes, E.2    Pham, K.T.3    Salazar, M.G.4    Guffey, M.B.5    Keele, B.F.6    Derdeyn, C.A.7    Farmer, P.8    Hunter, E.9    Allen, S.10
  • 7
    • 77958481214 scopus 로고    scopus 로고
    • Metabion
    • Metabion. , http://www.metabion.com/
  • 8
    • 77958499322 scopus 로고    scopus 로고
    • Macrogen
    • Macrogen. , http://www.macrogen.com/
  • 9
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 1999, 41:95-98.
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 10
    • 77958480502 scopus 로고    scopus 로고
    • BioEdit
    • BioEdit. , http://www.mbio.ncsu.edu/bioedit/bioedit.html
  • 11
    • 0034199476 scopus 로고    scopus 로고
    • The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences
    • 1104
    • Stothard P. The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 2000, 28:1102. 1104.
    • (2000) Biotechniques , vol.28 , pp. 1102
    • Stothard, P.1
  • 12
    • 84872274494 scopus 로고    scopus 로고
    • Sequence Manipulation Suite
    • Sequence Manipulation Suite. , http://www.bioinformatics.org/sms2/orf_find.html
  • 13
    • 7644227830 scopus 로고    scopus 로고
    • Distinct human immunodeficiency virus type 1 subtype A virus circulating in West Africa: sub-subtype A3
    • 10.1128/JVI.78.22.12438-12445.2004, 525043, 15507630
    • Meloni ST, Kim B, Sankale JL, Hamel DJ, Tovanabutra S, Mboup S, McCutchan FE, Kanki PJ. Distinct human immunodeficiency virus type 1 subtype A virus circulating in West Africa: sub-subtype A3. J Virol 2004, 78:12438-12445. 10.1128/JVI.78.22.12438-12445.2004, 525043, 15507630.
    • (2004) J Virol , vol.78 , pp. 12438-12445
    • Meloni, S.T.1    Kim, B.2    Sankale, J.L.3    Hamel, D.J.4    Tovanabutra, S.5    Mboup, S.6    McCutchan, F.E.7    Kanki, P.J.8
  • 14
    • 7744230253 scopus 로고    scopus 로고
    • Molecular epidemiology of human immunodeficiency virus type 1 sub-subtype A3 in Senegal from 1988 to 2001
    • 10.1128/JVI.78.22.12455-12461.2004, 525044, 15507632
    • Meloni ST, Sankale JL, Hamel DJ, Eisen G, Gueye-Ndiaye A, Mboup S, Kanki PJ. Molecular epidemiology of human immunodeficiency virus type 1 sub-subtype A3 in Senegal from 1988 to 2001. J Virol 2004, 78:12455-12461. 10.1128/JVI.78.22.12455-12461.2004, 525044, 15507632.
    • (2004) J Virol , vol.78 , pp. 12455-12461
    • Meloni, S.T.1    Sankale, J.L.2    Hamel, D.J.3    Eisen, G.4    Gueye-Ndiaye, A.5    Mboup, S.6    Kanki, P.J.7
  • 16
    • 85054448957 scopus 로고    scopus 로고
    • EBI ClustalW2
    • EBI ClustalW2. , http://www.ebi.ac.uk/Tools/clustalw2/index.html
  • 17
    • 0004248459 scopus 로고    scopus 로고
    • Phylogenetic analysis using parsimony and other methods. Version 4.0b10
    • Phylogenetic analysis using parsimony and other methods. Version 4.0b10. , http://paup.csit.fsu.edu/paupfaq/faq.html
  • 18
    • 0015808083 scopus 로고
    • Maximum-likelihood estimation of evolutionary trees from continuous characters
    • 1762641, 4741844
    • Felsenstein J. Maximum-likelihood estimation of evolutionary trees from continuous characters. Am J Hum Genet 1973, 25:471-492. 1762641, 4741844.
    • (1973) Am J Hum Genet , vol.25 , pp. 471-492
    • Felsenstein, J.1
  • 19
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • Yang Z. Estimating the pattern of nucleotide substitution. J Mol Evol 1994, 39:105-111.
    • (1994) J Mol Evol , vol.39 , pp. 105-111
    • Yang, Z.1
  • 20
    • 77958480171 scopus 로고    scopus 로고
    • Inkscape
    • Inkscape. , http://www.inkscape.org/
  • 21
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • 10.1093/bioinformatics/17.8.754, 11524383
    • Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755. 10.1093/bioinformatics/17.8.754, 11524383.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 22
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • 103818, 9847317
    • Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 1999, 73:152-160. 103818, 9847317.
    • (1999) J Virol , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5    Novak, N.G.6    Ingersoll, R.7    Sheppard, H.W.8    Ray, S.C.9
  • 23
    • 77958489382 scopus 로고    scopus 로고
    • Gambian 2003 Census Data
    • Gambian 2003 Census Data. , https://www.cia.gov/library/publications/the-world-factbook/fields/2075.html
  • 24
    • 0032551653 scopus 로고    scopus 로고
    • Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants
    • 10.1006/viro.1998.9211, 9683568
    • Carr JK, Salminen MO, Albert J, Sanders-Buell E, Gotte D, Birx DL, McCutchan FE. Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants. Virology 1998, 247:22-31. 10.1006/viro.1998.9211, 9683568.
    • (1998) Virology , vol.247 , pp. 22-31
    • Carr, J.K.1    Salminen, M.O.2    Albert, J.3    Sanders-Buell, E.4    Gotte, D.5    Birx, D.L.6    McCutchan, F.E.7
  • 25
    • 34547761762 scopus 로고    scopus 로고
    • Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form
    • 10.1128/JVI.00463-07, 1951349, 17553886
    • Abecasis AB, Lemey P, Vidal N, de Oliveira T, Peeters M, Camacho R, Shapiro B, Rambaut A, Vandamme AM. Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form. J Virol 2007, 81:8543-8551. 10.1128/JVI.00463-07, 1951349, 17553886.
    • (2007) J Virol , vol.81 , pp. 8543-8551
    • Abecasis, A.B.1    Lemey, P.2    Vidal, N.3    de Oliveira, T.4    Peeters, M.5    Camacho, R.6    Shapiro, B.7    Rambaut, A.8    Vandamme, A.M.9
  • 29
    • 8644251891 scopus 로고    scopus 로고
    • Comprehensive cross-clade neutralization analysis of a panel of anti-human immunodeficiency virus type 1 monoclonal antibodies
    • 10.1128/JVI.78.23.13232-13252.2004, 524984, 15542675
    • Binley JM, Wrin T, Korber B, Zwick MB, Wang M, Chappey C, Stiegler G, Kunert R, Zolla-Pazner S, Katinger H, et al. Comprehensive cross-clade neutralization analysis of a panel of anti-human immunodeficiency virus type 1 monoclonal antibodies. J Virol 2004, 78:13232-13252. 10.1128/JVI.78.23.13232-13252.2004, 524984, 15542675.
    • (2004) J Virol , vol.78 , pp. 13232-13252
    • Binley, J.M.1    Wrin, T.2    Korber, B.3    Zwick, M.B.4    Wang, M.5    Chappey, C.6    Stiegler, G.7    Kunert, R.8    Zolla-Pazner, S.9    Katinger, H.10
  • 31
    • 0033755804 scopus 로고    scopus 로고
    • Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa
    • 10.1128/JVI.74.22.10498-10507.2000, 110924, 11044094
    • Vidal N, Peeters M, Mulanga-Kabeya C, Nzilambi N, Robertson D, Ilunga W, Sema H, Tshimanga K, Bongo B, Delaporte E. Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa. J Virol 2000, 74:10498-10507. 10.1128/JVI.74.22.10498-10507.2000, 110924, 11044094.
    • (2000) J Virol , vol.74 , pp. 10498-10507
    • Vidal, N.1    Peeters, M.2    Mulanga-Kabeya, C.3    Nzilambi, N.4    Robertson, D.5    Ilunga, W.6    Sema, H.7    Tshimanga, K.8    Bongo, B.9    Delaporte, E.10
  • 35
    • 33746930841 scopus 로고    scopus 로고
    • The predominance of Human Immunodeficiency Virus type 1 (HIV-1) circulating recombinant form 02 (CRF02_AG) in West Central Africa may be related to its replicative fitness
    • 10.1186/1742-4690-3-40, 1525194, 16817969
    • Njai HF, Gali Y, Vanham G, Clybergh C, Jennes W, Vidal N, Butel C, Mpoudi-Ngolle E, Peeters M, Arien KK. The predominance of Human Immunodeficiency Virus type 1 (HIV-1) circulating recombinant form 02 (CRF02_AG) in West Central Africa may be related to its replicative fitness. Retrovirology 2006, 3:40. 10.1186/1742-4690-3-40, 1525194, 16817969.
    • (2006) Retrovirology , vol.3 , pp. 40
    • Njai, H.F.1    Gali, Y.2    Vanham, G.3    Clybergh, C.4    Jennes, W.5    Vidal, N.6    Butel, C.7    Mpoudi-Ngolle, E.8    Peeters, M.9    Arien, K.K.10
  • 36
    • 66149154716 scopus 로고    scopus 로고
    • CCR5- and CXCR4-tropic subtype C human immunodeficiency virus type 1 isolates have a lower level of pathogenic fitness than other dominant group M subtypes: implications for the epidemic
    • 10.1128/JVI.02051-08, 2681953, 19297481
    • Abraha A, Nankya IL, Gibson R, Demers K, Tebit DM, Johnston E, Katzenstein D, Siddiqui A, Herrera C, Fischetti L, et al. CCR5- and CXCR4-tropic subtype C human immunodeficiency virus type 1 isolates have a lower level of pathogenic fitness than other dominant group M subtypes: implications for the epidemic. J Virol 2009, 83:5592-5605. 10.1128/JVI.02051-08, 2681953, 19297481.
    • (2009) J Virol , vol.83 , pp. 5592-5605
    • Abraha, A.1    Nankya, I.L.2    Gibson, R.3    Demers, K.4    Tebit, D.M.5    Johnston, E.6    Katzenstein, D.7    Siddiqui, A.8    Herrera, C.9    Fischetti, L.10
  • 38
    • 0032789087 scopus 로고    scopus 로고
    • Characterization of V3 sequence heterogeneity in subtype C human immunodeficiency virus type 1 isolates from Malawi: underrepresentation of X4 variants
    • 112705, 10400718
    • Ping LH, Nelson JA, Hoffman IF, Schock J, Lamers SL, Goodman M, Vernazza P, Kazembe P, Maida M, Zimba D, et al. Characterization of V3 sequence heterogeneity in subtype C human immunodeficiency virus type 1 isolates from Malawi: underrepresentation of X4 variants. J Virol 1999, 73:6271-6281. 112705, 10400718.
    • (1999) J Virol , vol.73 , pp. 6271-6281
    • Ping, L.H.1    Nelson, J.A.2    Hoffman, I.F.3    Schock, J.4    Lamers, S.L.5    Goodman, M.6    Vernazza, P.7    Kazembe, P.8    Maida, M.9    Zimba, D.10
  • 39
    • 0036569329 scopus 로고    scopus 로고
    • Effect of human immunodeficiency virus (HIV) type 1 envelope subtypes A and D on disease progression in a large cohort of HIV-1-positive persons in Uganda
    • 10.1086/340130, 12001041
    • Kaleebu P, French N, Mahe C, Yirrell D, Watera C, Lyagoba F, Nakiyingi J, Rutebemberwa A, Morgan D, Weber J, et al. Effect of human immunodeficiency virus (HIV) type 1 envelope subtypes A and D on disease progression in a large cohort of HIV-1-positive persons in Uganda. J Infect Dis 2002, 185:1244-1250. 10.1086/340130, 12001041.
    • (2002) J Infect Dis , vol.185 , pp. 1244-1250
    • Kaleebu, P.1    French, N.2    Mahe, C.3    Yirrell, D.4    Watera, C.5    Lyagoba, F.6    Nakiyingi, J.7    Rutebemberwa, A.8    Morgan, D.9    Weber, J.10
  • 40
    • 40549121269 scopus 로고    scopus 로고
    • Effect of human immunodeficiency virus Type 1 (HIV-1) subtype on disease progression in persons from Rakai, Uganda, with incident HIV-1 infection
    • 10.1086/527416, 18266607
    • Kiwanuka N, Laeyendecker O, Robb M, Kigozi G, Arroyo M, McCutchan F, Eller LA, Eller M, Makumbi F, Birx D, et al. Effect of human immunodeficiency virus Type 1 (HIV-1) subtype on disease progression in persons from Rakai, Uganda, with incident HIV-1 infection. J Infect Dis 2008, 197:707-713. 10.1086/527416, 18266607.
    • (2008) J Infect Dis , vol.197 , pp. 707-713
    • Kiwanuka, N.1    Laeyendecker, O.2    Robb, M.3    Kigozi, G.4    Arroyo, M.5    McCutchan, F.6    Eller, L.A.7    Eller, M.8    Makumbi, F.9    Birx, D.10
  • 41
    • 34047207715 scopus 로고    scopus 로고
    • HIV-1 subtype D infection is associated with faster disease progression than subtype A in spite of similar plasma HIV-1 loads
    • 10.1086/512682, 17357054
    • Baeten JM, Chohan B, Lavreys L, Chohan V, McClelland RS, Certain L, Mandaliya K, Jaoko W, Overbaugh J. HIV-1 subtype D infection is associated with faster disease progression than subtype A in spite of similar plasma HIV-1 loads. J Infect Dis 2007, 195:1177-1180. 10.1086/512682, 17357054.
    • (2007) J Infect Dis , vol.195 , pp. 1177-1180
    • Baeten, J.M.1    Chohan, B.2    Lavreys, L.3    Chohan, V.4    McClelland, R.S.5    Certain, L.6    Mandaliya, K.7    Jaoko, W.8    Overbaugh, J.9
  • 43
    • 0037103634 scopus 로고    scopus 로고
    • No difference in clinical progression between patients infected with the predominant human immunodeficiency virus type 1 circulating recombinant form (CRF) 02_AG strain and patients not infected with CRF02_AG, in Western and West-Central Africa: a four-year prospective multicenter study
    • 10.1086/341833, 12195375
    • Laurent C, Bourgeois A, Faye MA, Mougnutou R, Seydi M, Gueye M, Liegeois F, Kane CT, Butel C, Mbuagbaw J, et al. No difference in clinical progression between patients infected with the predominant human immunodeficiency virus type 1 circulating recombinant form (CRF) 02_AG strain and patients not infected with CRF02_AG, in Western and West-Central Africa: a four-year prospective multicenter study. J Infect Dis 2002, 186:486-492. 10.1086/341833, 12195375.
    • (2002) J Infect Dis , vol.186 , pp. 486-492
    • Laurent, C.1    Bourgeois, A.2    Faye, M.A.3    Mougnutou, R.4    Seydi, M.5    Gueye, M.6    Liegeois, F.7    Kane, C.T.8    Butel, C.9    Mbuagbaw, J.10
  • 44
    • 70349428513 scopus 로고    scopus 로고
    • Signature nucleotide polymorphisms at positions 64 and 65 in reverse transcriptase favor the selection of the K65R resistance mutation in HIV-1 subtype C
    • 10.1086/605894, 19764886
    • Invernizzi CF, Coutsinos D, Oliveira M, Moisi D, Brenner BG, Wainberg MA. Signature nucleotide polymorphisms at positions 64 and 65 in reverse transcriptase favor the selection of the K65R resistance mutation in HIV-1 subtype C. J Infect Dis 2009, 200:1202-1206. 10.1086/605894, 19764886.
    • (2009) J Infect Dis , vol.200 , pp. 1202-1206
    • Invernizzi, C.F.1    Coutsinos, D.2    Oliveira, M.3    Moisi, D.4    Brenner, B.G.5    Wainberg, M.A.6
  • 45
    • 71049159978 scopus 로고    scopus 로고
    • Differences in resistance mutations among HIV-1 non-subtype B infections: a systematic review of evidence (1996-2008)
    • 10.1186/1758-2652-12-11, 2713201, 19566959
    • Martinez-Cajas JL, Pai NP, Klein MB, Wainberg MA. Differences in resistance mutations among HIV-1 non-subtype B infections: a systematic review of evidence (1996-2008). J Int AIDS Soc 2009, 12:11. 10.1186/1758-2652-12-11, 2713201, 19566959.
    • (2009) J Int AIDS Soc , vol.12 , pp. 11
    • Martinez-Cajas, J.L.1    Pai, N.P.2    Klein, M.B.3    Wainberg, M.A.4


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