AnnoTrack - a tracking system for genome annotation

BMC Genomics

Volumn 11, Issue 1, 2010, Pages

  Kokocinski, Felix ^a   Harrow, Jennifer ^a   Hubbard, Tim ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; CLIENT SERVER APPLICATION; COMPUTER INTERFACE; COMPUTER SYSTEM; DATA ANALYSIS SOFTWARE; EVIDENCE BASED PRACTICE; GENE SEQUENCE; GENETIC DATABASE; HUMAN GENOME; INFORMATION RETRIEVAL; LARGE SCALE PRODUCTION; SCALE UP; SCIENTIFIC LITERATURE; SEARCH ENGINE; SYSTEM ANALYSIS; COMPUTER PROGRAM; GENETICS; HUMAN; METHODOLOGY; MOLECULAR GENETICS;

DATABASES, GENETIC; GENOME, HUMAN; HUMANS; MOLECULAR SEQUENCE ANNOTATION; SOFTWARE;

EID: 77957256775     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-538     Document Type: Article

References (15)

1. Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R. GENCODE: producing a reference annotation for ENCODE. Genome Biol 2006, 7(Suppl 1):S4. 1-9, 10.1186/gb-2006-7-s1-s4, 1810553, 16925838.
2. GENCODE project pages. , http://www.gencodegenes.org
3. Pruitt KD, Harrow J, Harte RA, Wallin C, Diekhans M, Maglott DR, Searle S, Farrell CM, Loveland JE, Ruef BJ, Hart E, Suner MM, Landrum MJ, Aken B, Ayling S, Baertsch R, Fernandez-Banet J, Cherry JL, Curwen V, Dicuccio M, Kellis M, Lee J, Lin MF, Schuster M, Shkeda A, Amid C, Brown G, Dukhanina O, Frankish A, Hart J, Maidak BL, Mudge J, Murphy MR, Murphy T, Rajan J, Rajput B, Riddick LD, Snow C, Steward C, Webb D, Weber JA, Wilming L, Wu W, Birney E, Haussler D, Hubbard T, Ostell J, Durbin R, Lipman D. The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. Genome Res 2009, 19:1316-1323. 10.1101/gr.080531.108, 2704439, 19498102.
4. Flicek P, Aken BL, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Coates G, Fairley S, Fitzgerald S, Fernandez-Banet J, Gordon L, Gräf S, Haider S, Hammond M, Howe K, Jenkinson A, Johnson N, Kähäri A, Keefe D, Keenan S, Kinsella R, Kokocinski F, Koscielny G, Kulesha E, Lawson D, Longden I, Massingham T, McLaren W, Megy K, Overduin B, Pritchard B, Rios D, Ruffier M, Schuster M, Slater G, Smedley D, Spudich G, Tang YA, Trevanion S, Vilella A, Vogel J, White S, Wilder SP, Zadissa A, Birney E, Cunningham F, Dunham I, Durbin R, Fernández-Suarez XM, Herrero J, Hubbard TJ, Parker A, Proctor G, Smith J, Searle SM. Ensembl's 10th year. Nucleic Acids Res 2010, 28:D557-562.
5. Genome Reference Consortium report system. , http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/ReportAnIssue.shtml
6. Mouse Genome Annotation report system. , http://www.ncbi.nlm.nih.gov/genome/guide/mouse/MGAReport.shtml
7. Atlassian's Jira software. , http://www.atlassian.com/software/jira/
8. Redmine tracking system. 2006, Jean-Philippe Lang, 2010., http://www.redmine.org
9. Best Practical's RT system. , http://bestpractical.com/rt
10. Bugzilla software. , http://www.bugzilla.org/
11. Trac software. , http://trac.edgewall.org/
12. Jenkinson AM, Albrecht M, Birney E, Blankenburg H, Down T, Finn RD, Hermjakob H, Hubbard TJ, Jimenez RC, Jones P, Kähäri A, Kulesha E, Macías JR, Reeves GA, Prlić A. Integrating biological data - the Distributed Annotation System. BMC Bioinformatics 2008, 9(Suppl 8):S3. 10.1186/1471-2105-9-S8-S3, 2500094, 18673527.
13. The DAS registry. , http://www.dasregistry.org
14. GENCODE DAS format specifications. , http://www.sanger.ac.uk/resources/databases/encode/gencodedasformats.html
15. AnnoTrack homepage. , http://annotrack.sanger.ac.uk