Multi-netclust: An efficient tool for finding connected clusters in multi-parametric networks

Bioinformatics

Volumn 26, Issue 19, 2010, Pages 2482-2483

  Kuzniar, Arnold ^a,b   Dhir, Somdutta ^c   Nijveen, Harm ^a,b   Pongor, Sándor ^c,d   Leunissen, Jack A M ^a,b  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b NETHERLANDS BIOINFORMATICS CENTRE   (Netherlands)

^c INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

^d INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CLUSTER ANALYSIS; COMPUTER INTERFACE; COMPUTER PROGRAM; FACTUAL DATABASE;

ALGORITHMS; CLUSTER ANALYSIS; DATABASES, FACTUAL; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 77957239876     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq435     Document Type: Article

References (9)

1. Altschul, SF. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
2. Chiang, YJ. et al. (1995) External-Memory Graph Algorithms. In Proceedings of the 6th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA'95). Society for Industrial and Applied Mathematics, San Francisco, CA, USA, pp. 139-149.
3. Enright, AJ. et al. (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res., 30, 1575-1584.
4. Holm, L. and Sander, C. (1995) Dali: a network tool for protein structure comparison. Trends Biochem. Sci., 20, 478-480.
5. Kittler, J. et al. (1998) On combining classifiers. IEEE Trans. Pattern Anal. Mach. Intell., 20, 226-239.
6. Li, W and Godzik, A. (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 22, 1658-1659.
7. Sonego, P. et al. (2007) A Protein Classification Benchmark collection for machine learning. Nucleic Acids Res., 35, D232-D236.
8. Smith, T.F. and Waterman, M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 141, 195-197.
9. Tarjan, R.E. (1975) Efficiency of a Good But Not Linear Set Union Algorithm. J. ACM. 22, 215-225.