Exploring zebrafish genomic, functional and phenotypic data using ZFIN

Current Protocols in Bioinformatics

Volumn , Issue SUPPL. 31, 2010, Pages

  Ramachandran, Sridhar ^a   Ruef, Barbara ^a   Pich, Christian ^a   Sprague, Judy ^a  

^a UNIVERSITY OF OREGON   (United States)

Author keywords

bioinformatics; database; gene expression; genomics; phenotype; zebrash

Indexed keywords

ANTIBODY; FIBROBLAST GROWTH FACTOR;

ALLELE; ANIMAL GENETICS; BRAIN; COMPUTER; COMPUTER PROGRAM; GENE EXPRESSION; GENE MAPPING; GENE SEQUENCE; GENOMICS; INFORMATION RETRIEVAL; INTERNET; INTERNET PROTOCOL; NOMENCLATURE; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; REVIEW; WEB BROWSER; ZEBRA FISH;

ANIMALS; DATABASES, GENETIC; GENE EXPRESSION; GENOME; PHENOTYPE; ZEBRAFISH;

DANIO RERIO;

EID: 77956953896     PISSN: 19343396     EISSN: 1934340X     Source Type: Journal    
DOI: 10.1002/0471250953.bi0118s31     Document Type: Review

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24. http://zfin.org/zf-info/catch/catch.html ZFINs external links page includes Web resources and stock centers for zebrafish.
25. http://zfin.org/zf-info/downloads.html ZFINs site for downloading large data sets.
26. http://zfin.org/zf-info/nomen.html Zebrafish Nomenclature guidelines.
27. http://zfin.org/cgi-bin/webdriver?MIval=aa-new-line.apg ZFINs submission form for proposed mutant/transgenic line names. ZFIN login is required.
28. http://zfin.org/cgi-bin/webdriver?MIval=aa-new-gene.apg ZFINs submission form for proposed gene names. ZFIN login required.
29. http://zfin.org/zf-info/anatomy/dict/sum.html ZFINs links to zebrafish atlases and anatomical resources.
30. http://wiki.zfin.org The ZFIN Community Wiki, where zebrafish researchers can share information with the rest of the community.
31. http://zebrafish.org/zirc/ The Zebrafish International Resource Center (ZIRC) acquires, maintains and redistributes zebrafish resources.
32. http://www.openhelix.com/zfin OpenHelix provides tutorial and training materials that introduce new users to ZFIN.
33. http://www.sanger.ac.uk/Projects/D-rerio/ The Danio rerio Sequencing Project at the Sanger Institute describes the genome project and its status.
34. http://gmod.org/wiki/Gbrowse The GMOD wiki page for GBrowse provides a description, and links to further documentation.
35. http://www.obofoundry.org/ The Open Biomedical Ontologies Web site provides science-based ontologies in the biomedical domain.