An organismal view of cellular aging;Une vue organismique du vieillissement cellulaire

Medecine et Longevite

Volumn 2, Issue 3, 2010, Pages 141-150

  Carnes, B A ^a   Staats, D O ^a   Vaughan, M B ^b   Witten, T M ^c  

^a UNIVERSITY OF OKLAHOMA COLLEGE OF MEDICINE   (United States)

^b UNIVERSITY OF CENTRAL OKLAHOMA   (United States)

^c VIRGINIA COMMONWEALTH UNIVERSITY   (United States)

Author keywords

Cell; Cellular aging; Senescence

Indexed keywords

FREE RADICAL; NITRIC OXIDE;

AUTOPHAGY; CELL AGING; CELL LEVEL; EVOLUTION; EXTRACELLULAR MATRIX; GENOMIC INSTABILITY; GLYCATION; HUMAN; LONGEVITY; MOLECULAR DYNAMICS; MOLECULE; NONHUMAN; ORGANISM; PHENOTYPIC PLASTICITY; POPULATION; RADIATION; REVIEW; SENESCENCE; THEORY; TISSUE;

CALAMUS ROTANG;

EID: 77956920340     PISSN: 18757170     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mlong.2010.06.002     Document Type: Review

References (108)

1. Kirkwood T.B.L. Evolution of aging. Nature 1977, 270(5635):301-304.
2. Harman D. Aging - a theory based on free-radical and radiation-chemistry. J Gerontol 1956, 11(3):298-300.
3. Rattan S.I.S. Theories of biological aging: genes, proteins, and free radicals. Free Radical Res 2006, 40(12):1230-1238.
4. Weinert B.T., Timiras P.S. Invited review: theories of aging. J Appl Physiol 2003, 95(4):1706-1716.
5. Strehler B.L. Origin and comparison of the effects of time and high-energy radiations on living systems. Q Rev Biol 1959, 34(2):117-142.
6. Arking R. Biology of aging: observations and principles 1991, Prentice Hall, Englewood Cliffs.
7. Hayflick L. The not-so-close relationship between biological aging and age-associated pathologies in humans. J Gerontol A Biol Sci Med Sci 2004, 59(6):B547-B550. [discussion 51-3].
8. Gould S.J. The panda's thumb: more reflections in natural history 1980, Norton, New York. 1st ed.
9. Von Neumann J. Probabilistic logics and the synthesis of reliable organisms from unreliable parts. Automata studies 1956, 43-98. Princeton University Press, Princeton. C.E. Shannon, J. McCarthy, W.R. Ashby (Eds.).
10. Kirkwood T.B.L., Holliday R. Evolution of aging and longevity. Proc R Soc Lond B Biol Sci 1979, 205(1161):531-546.
11. Carnes B.A., Olshansky S.J., Grahn D. Biological evidence for limits to the duration of life. Biogerontology 2003, 4(1):31-45.
12. Rosen R. The representation of biological systems from the standpoint of categories. B Math Biophys 1958, 20:317-341.
13. Rosen R. A relational theory of biological systems. B Math Biophys 1958, 20:245-260.
14. Rosen R. A relational theory of biological systems II. B Math Biophys 1959, 21:109-128.
15. Rosen R. Some comments on re-establishability. B Math Biophys 1965, 27:11-14.
16. Witten T.M. (M,R)-systems, (P,M,C)-nets, hierarchical decay, and biological aging: reminiscences of Robert Rosen. Chem Biodivers 2007, 4(10):2332-2344.
17. Stephens C. Senescence: even bacteria get old. Curr Biol 2005, 15(8):R308-R310.
18. Ackermann M., Chao L., Bergstrom C.T., Doebeli M. On the evolutionary origin of aging. Aging Cell 2007, 6(2):235-244.
19. Ackermann M., Schauerte A., Stearns S.C., Jenal U. Experimental evolution of aging in a bacterium. BMC Evol Biol 2007, 7:126.
20. Ackermann M., Stearns S.C., Jenal U. Senescence in a bacterium with asymmetric division. Science 2003, 300(5627):1920.
21. Stewart E.J., Madden R., Paul G., Taddei F. Aging and death in an organism that reproduces by morphologically symmetric division. PloS Biol 2005, 3(2):295-300.
22. Brunk U.T., Terman A. The mitochondrial-lysosomal axis theory of aging - Accumulation of damaged mitochondria as a result of imperfect autophagocytosis. Eur J Biochem 2002, 269(8):1996-2002.
23. Macara I.G., Mili S. Polarity and differential inheritance: universal attributes of life?. Cell 2008, 135(5):801-812.
24. Yin D., Chen K. The essential mechanisms of aging: Irreparable damage accumulation of biochemical side-reactions. Exp Gerontol 2005, 40(6):455-465.
25. Hamilton W.D. Moulding of senescence by natural selection. J Theor Biol 1966, 12(1):12.
26. Medawar P.B. An unsolved problem of biology 1952, H.K. Lewis, London.
27. Williams G.C. Pleiotropy, natural-selection, and the evolution of senescence. Evolution 1957, 11(4):398-411.
28. Carnes B.A. Senescence viewed through the lens of comparative biology. Ann N Y Acad Sci 2007, 1114:14-22.
29. Hayflick L. Biological aging is no longer an unsolved problem. Biogerontol Mech Interven 2007, 1100:1-13.
30. Stearns S.C. The evolution of life histories 1992, Oxford University Press, Oxford/New York.
31. Carnes B.A., Olshansky S.J., Gavrilov L., Gavrilova N., Grahn D. Human longevity: nature vs. nurture: fact or fiction. Perspect Biol Med 1999, 42(3):422-441.
32. Olshansky S.J., Carnes B.A., Brody J. A biodemographic interpretation of life span. Popul Dev Rev 2002, 28(3):501-513.
33. Fraga M.F., Ballestar E., Paz M.F., Ropero S., Setien F., Ballestart M.L., et al. Epigenetic differences arise during the lifetime of monozygotic twins. Proc Natl Acad Sci U S A 2005, 102(30):10604-10609.
34. Holliday R. The inheritance of epigenetic defects. Science 1987, 238(4824):163-170.
35. Richardson B. Impact of aging on DNA methylation. Ageing Res Rev 2003, 2(3):245-261.
36. Vijg J. Aging of the genome: the dual role of the DNA in life and death 2007, Oxford University Press, Oxford/New York.
37. Cerami A., Vlassara H., Brownlee M. Glucose and aging. Sci Am 1987, 256(5):90.
38. Ramasamy R., Vannucci S.J., Yan S.S.D., Herold K., Yan S.F., Schmidt A.M. Advanced glycation end products and RAGE: a common thread in aging, diabetes, neurodegeneration, and inflammation. Glycobiology 2005, 15(7):16r-28r.
39. Suji G., Sivakami S. Glucose, glycation and aging. Biogerontology 2004, 5(6):365-373.
40. Robert L. Elastin, past, present and future. Pathol Biol 2002, 50(8):503-511.
41. Terman A., Gustafsson B., Brunk U.T. Autophagy, organelles and ageing. J Pathol 2007, 211(2):134-143.
42. McCann S.M., Licinio J., Wong M.L., Yu W.H., Karanth S., Rettorri V. The nitric oxide hypothesis of aging. Exp Gerontol 1998, 33(7-8):813-826.
43. Gafni A. Protein structure and turnover. Handbook of the biology of aging 2001, 59-83. Academic Press, San Diego, Calif. 5th edition.
44. Nakamura T., Gu Z.Z., Lipton S.A. Contribution of glutamatergic signaling to nitrosative stress-induced protein misfolding in normal brain aging and neurodegenerative diseases. Aging Cell 2007, 6(3):351-359.
45. Rattan S.I.S. Synthesis, modifications, and turnover of proteins during aging. Exp Gerontol 1996, 31(1-2):33-47.
46. Soti C., Csermely P. Protein stress and stress proteins: implications in aging and disease. J Biosciences 2007, 32(3):511-515.
47. Kapahi P., Vijg J. Aging - Lost in translation?. New Engl J Med 2009, 361(27):2669-2670.
48. Ferrarini L., Bertelli L., Feala J., McCulloch A.D., Paternostro G. A more efficient search strategy for aging genes based on connectivity. Bioinformatics 2005, 21(3):338-348.
49. Managbanag J.R., Witten T.M., Bonchev D., Fox L.A., Tsuchiya M., Kennedy B.K., et al. Shortest-path network analysis is a useful approach toward identifying genetic determinants of longevity. Plos One 2008, 3:11.
50. Promislow D.E.L. Protein networks, pleiotropy and the evolution of senescence. Proc R Soc Lond B Bio Sci 2004, 271(1545):1225-1234.
51. Witten M. A return to time, cells, systems and aging - Rethinking the concept of senescence in mammalian organisms. Mech Ageing Dev 1983, 21(1):69-81.
52. Witten M. A return to time, cells, systems and aging: II. Relational and reliability theoretic approaches to the study of senescence in living systems. Mech Ageing Dev 1984, 27(3):323-340.
53. Witten T.M., Bonchev D. Predicting aging/longevity-related genes in the nematode Caenorhabditis elegans. Chem Biodivers 2007, 4(11):2639-2655.
54. Xu J., Li Y. Discovering disease-genes by topological features in human protein-protein interaction network. Bioinformatics 2006, 22(22):2800-2805.
55. Auffray C., Imbeaud S., Roux-Rouquie M., Hood L. From functional genomics to systems biology: concepts and practices. C R Biol 2003, 326(10-11):879-892.
56. Hood L. Systems biology: integrating technology, biology, and computation. Mech Ageing Dev 2003, 124(1):9-16.
57. Khammash M. Reverse engineering: the architecture of biological networks. Biotechniques 2008, 44(3):323-329.
58. Ideker T., Winslow L.R., Lauffenburger A.D. Bioengineering and systems biology. Ann Biomed Eng 2006, 34(2):257-264.
59. Newman M.E.J., Barabási A.L., Watts D.J. The structure and dynamics of networks 2006, Princeton University Press, Princeton.
60. Witten TM. Aging by the numbers: some mathematics of aging processes. New York: Springer-Verlag; in press.
61. Barabasi A.L., Oltvai Z.N. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004, 5(2):101-115.
62. Jeong H., Mason S.P., Barabasi A.L., Oltvai Z.N. Lethality and centrality in protein networks. Nature 2001, 411(6833):41-42.
63. Lander A.D. The edges of understanding. BMC Biol 2010, 8:40.
64. Musso C.G., Nunez J.F. Feedback between geriatric syndromes: general system theory in geriatrics. Int Urol Nephrol 2006, 38(3-4):785-786.
65. Finkel T., Holbrook N.J. Oxidants, oxidative stress and the biology of ageing. Nature 2000, 408(6809):239-247.
66. Cavanaugh J.T., Kochi N., Stergiou N. Nonlinear analysis of ambulatory activity patterns in community-dwelling older adults. J Gerontol A Biol Sci Med Sci 2010, 65(2):197-203.
67. Goldberger A.L., Peng C.K., Lipsitz L.A. What is physiologic complexity and how does it change with aging and disease?. Neurobiol Aging 2002, 23(1):23-26.
68. Vaillancourt D.E., Newell K.M. Complexity in aging and disease: response to commentaries. Neurobiol Aging 2002, 23(1):27-29.
69. Shapiro J.A. The significances of bacterial colony patterns. Bioessays 1995, 17(7):597-607.
70. Ben-Jacob E., Cohen I., Gutnick D.L. Cooperative organization of bacterial colonies: from genotype to morphotype. Annu Rev Microbiol 1998, 52:779-806.
71. Muller W.E.G. The origin of metazoan complexity: porifera as integrated animals. Integr Comp Biol 2003, 43(1):3-10.
72. Carlson B.M., Faulkner J.A. Muscle transplantation between young and old rats - age of host determines recovery. Am J Physiol 1989, 256(6):C1262-C1266.
73. Campisi J., di Fagagna F.D. Cellular senescence: when bad things happen to good cells. Nat Rev Mol Cell Bio 2007, 8(9):729-740.
74. Fisher G.J., Quan T., Purohit T., Shao Y., Cho M.K., He T., et al. Collagen fragmentation promotes oxidative stress and elevates matrix metalloproteinase-1 in fibroblasts in aged human skin. Am J Pathol 2009, 174(1):101-114.
75. Fisher G.J., Varani J., Voorhees J.J. Looking older - Fibroblast collapse and therapeutic implications. Arch Dermatol 2008, 144(5):666-672.
76. Tomasek J.J., Gabbiani G., Hinz B., Chaponnier C., Brown R.A. Myofibroblasts and mechano-regulation of connective tissue remodelling. Nat Rev Mol Cell Bio 2002, 3(5):349-363.
77. Grinnell F., Zhu M.F., Carlson M.A., Abrams J.M. Release of mechanical tension triggers apoptosis of human fibroblasts in a model of regressing granulation tissue. Exp Cell Res 1999, 248(2):608-619.
78. Niland S., Cremer A., Fluck J., Eble J.A., Krieg T., Sollberg S. Contraction-dependent apoptosis of normal dermal fibroblasts. J Invest Dermatol 2001, 116(5):686-692.
79. McCullough J.L., Kelly K.M. Prevention and treatment of skin aging. Ann N Y Acad Sci 2006, 1067:323-331.
80. Campisi J., Sedivy J. How does proliferative homeostasis change with age? What causes it and how does it contribute to aging?. J Gerontol A Biol 2009, 64(2):164-166.
81. Mott J.D., Werb Z. Regulation of matrix biology by matrix metalloproteinases. Curr Opin Cell Biol 2004, 16(5):558-564.
82. Langevin H.M. Connective tissue: a body-wide signaling network?. Med Hypotheses 2006, 66(6):1074-1077.
83. Langevin H.M., Cornbrooks C.J., Taatjes D.J. Fibroblasts form a body-wide cellular network. Histochem Cell Biol 2004, 122(1):7-15.
84. Moyer K.E., Ehrlich H.P. Modulation of human fibroblast gap junction intercellular communication by hyaluronan. J Cell Physiol 2003, 196(1):165-170.
85. Robert L. Mechanisms of aging of the extracellular matrix: role of the elastin-laminin receptor. Gerontology 1998, 44(6):307-317.
86. Robert L. Fritz Verzar was born 120 years ago: his contribution to experimental gerontology through the collagen research as assessed after half a century. Arch Gerontol Geriat 2006, 43(1):13-43.
87. Robert L., Jacob M.P., Labatrobert J. Cell-matrix interactions in the genesis of arteriosclerosis and atheroma - Effect of aging. Ann N Y Acad Sci 1992, 673:331-341.
88. Robert L., Robert A.M., Fulop T. Rapid increase in human life expectancy: will it soon be limited by the aging of elastin?. Biogerontology 2008, 9(2):119-133.
89. Senior R.M., Griffin G.L., Mecham R.P., Wrenn D.S., Prasad K.U., Urry D.W. Val-Gly-Val-Ala-Pro-Gly, a repeating peptide in elastin, is chemotactic for fibroblasts and monocytes. J Cell Biol 1984, 99(3):870-874.
90. Tummalapalli C.M., Tyagi S.C. Responses of vascular smooth muscle cell to extracellular matrix degradation. J Cell Biochem 1999, 75(3):515-527.
91. Shipley J.M., Doyle G.A.R., Fliszar C.J., Ye Q.Z., Johnson L.L., Shapiro S.D., et al. The structural basis for the elastolytic activity of the 92-kDa and 72-kDa gelatinases. J Biol Chem 1996, 271(8):4335-4341.
92. Lefevre M., Rucker R.B. Aorta elastin turnover in normal and hypercholesterolemic Japanese quail. Biochim Biophys Acta 1980, 630(4):519-529.
93. Shapiro S.D., Endicott S.K., Province M.A., Pierce J.A., Campbell E.J. Marked longevity of human lung parenchymal elastic fibers deduced from prevalence of D-aspartate and nuclear-weapons related radiocarbon. J Clin Invest 1991, 87(5):1828-1834.
94. Bruel A., Oxlund H. Changes in biomechanical properties, composition of collagen and elastin, and advanced glycation endproducts of the rat aorta in relation to age. Atherosclerosis 1996, 127(2):155-165.
95. Sell D.R., Biemel K.M., Reihl O., Lederer M.O., Strauch C.M., Monnier V.M. Glucosepane is a major protein cross-link of the senescent human extracellular matrix - Relationship with diabetes. J Biol Chem 2005, 280(13):12310-12315.
96. Campisi J., Yaswen P. Aging and cancer cell biology, 2009. Aging Cell 2009, 8(3):221-225.
97. Linder S. The matrix corroded: podosomes and invadopodia in extracellular matrix degradation. Trends Cell Biol 2007, 17(3):107-117.
98. Schmeichel K.L., Bissell M.J. Modeling tissue-specific signaling and organ function in three dimensions. J Cell Sci 2003, 116(12):2377-2388.
99. Vaughan M.B., Ramirez R.D., Andrews C.M., Wright W.E., Shay J.W. H-Ras expression in immortalized keratinocytes produces an invasive epithelium in cultured skin equivalents. Plos One 2009, 4:11.
100. Nova D., Le Griel C., Holvoet S., Gentilhomme E., Vincent C., Staquet M.J., et al. Comparative studies on the secretion and activation of MMPs in two reconstructed human skin models using HaCaT- and HaCaT-ras-transfected cell lines. Clin Exp Metastas 2003, 20(8):675-683.
101. He S.H., Nakada D., Morrison S.J. Mechanisms of stem cell self-renewal. Annu Rev Cell Dev Biol 2009, 25:377-406.
102. Boulding K.E. General systems-theory - the skeleton of science. Manag Sci 1956, 2(3):197-208.
103. Von Bertalanffy L. An outline of general system theory. Br J Phil Sci 1950, 1(2):134-165.
104. Smith J.R., Whitney R.G. Intraclonal variation in proliferative potential of human-diploid fibroblasts - Stochastic mechanism for cellular aging. Science 1980, 207(4426):82-84.
105. Pincus S. Approximate entropy (ApEn) as a complexity measure. Chaos 1995, 5(1):110-117.
106. Oh S.W., Mukhopadhyay A., Svrzikapa N., Jiang F., Davis R.J., Tissenbaum H.A. JNK regulates lifespan in Caenorhabditis elegans by modulating nuclear translocation of forkhead transcription factor/DAF-16. Proc Natl Acad Sci U S A 2005, 102(12):4494-4499.
107. Dobzhans T. Nothing in biology makes sense except in light of evolution. Am Biol Teach 1973, 35(3):125-129.
108. Dawkins R. The selfish gene 1976, Oxford University Press, Oxford.