Influenza A subtyping: Seasonal H1N1, H3N2, and the appearance of novel H1N1

Journal of Molecular Diagnostics

Volumn 12, Issue 5, 2010, Pages 664-669

  Kaul, Karen L ^a   Mangold, Kathy A ^a   Du, Hongyan ^a   Pesavento, Kristen M ^a   Nawrocki, John ^b   Nowak, Jan A ^a  

^a NORTHSHORE UNIVERSITY HEALTHSYSTEM   (United States)

^b ILLINOIS DEPARTMENT OF PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MATRIX PROTEIN; VIRUS RNA;

ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; INFLUENZA A (H1N1); INFLUENZA A (H3N2); INFLUENZA B; INFLUENZA VIRUS A H1N1; INFLUENZA VIRUS A H3N2; INFLUENZA VIRUS B; NONHUMAN; PANDEMIC; REAL TIME POLYMERASE CHAIN REACTION; RNA EXTRACTION; SEASONAL INFLUENZA; VALIDATION PROCESS; VIRUS DETECTION;

INFLUENZA A VIRUS; ORTHOMYXOVIRIDAE; SUIDAE;

EID: 77956868216     PISSN: 15251578     EISSN: None     Source Type: Journal    
DOI: 10.2353/jmoldx.2010.090225     Document Type: Article

References (16)

1. Stone B, Burrows J, Schepetiuk S, Higgins G, Hampson A, Shaw R, Kok T: Rapid detection and simultaneous subtype differentiation of influenza A viruses by real time PCR. J Virol Methods 2004, 117:103-112
2. Update: influenza activity-United States, September 28-November 29, 2008. MMWR Morb Mortal Wkly Rep 2008, 57:1329-1332
3. CDC Human Influenza Virus Real-time RT-PCR Detection and Characterization Panel (rRT-PCR Flu Panel). Atlanta, GA, Centers for Disease Control and Prevention, 2008
4. CDC Protocol of Realtime RTPCR for Influenza A(H1N1). Atlanta, GA, Centers for Disease Control and Prevention, 2009
5. Garten RJ, Davis CT, Russell CA, Shu B, Lindstrom S, Balish A, Sessions WM, Xu X, Skepner E, Deyde V, Okomo-Adhiambo M, Gubareva L, Barnes J, Smith CB, Emery SL, Hillman MJ, Rivailler P, Smagala J, de Graaf M, Burke DF, Fouchier RA, Pappas C, Alpuche-Aranda CM, Lopez-Gatell H, Olivera H, Lopez I, Myers CA, Faix D, Blair PJ, Yu C, Keene KM, Dotson PD, Jr., Boxrud D, Sambol AR, Abid SH, St George K, Bannerman T, Moore AL, Stringer DJ, Blevins P, Demmler-Harrison GJ, Ginsberg M, Kriner P, Waterman S, Smole S, Guevara HF, Belongia EA, Clark PA, Beatrice ST, Donis R, Katz J, Finelli L, Bridges CB, Shaw M, Jernigan DB, Uyeki TM, Smith DJ, Klimov AI, Cox NJ: Antigenic and genetic characteristics of swineorigin 2009 A(H1N1) influenza viruses circulating in humans. Science 2009, 325:197-201
6. Carr MJ, Gunson R, Maclean A, Coughlan S, Fitzgerald M, Scully M, O'Herlihy B, Ryan J, O'Flanagan D, Connell J, Carman WF, Hall WW: Development of a real-time RT-PCR for the detection of swine-lineage influenza A(H1N1) virus infections. J Clin Virol 2009, 45:196-199
7. Ellis J, Iturriza M, Allen R, Bermingham A, Brown K, Gray J, Brown D: Evaluation of four real-time PCR assays for detection of influenza A(H1N1)v viruses. Euro Surveill 2009, 14(22)
8. He J, Bose ME, Beck ET, Fan J, Tiwari S, Metallo J, Jurgens LA, Kehl SC, Ledeboer N, Kumar S, Weisburg W, Henrickson KJ: Rapid multiplex reverse transcription-PCR typing of influenza A and B virus, and subtyping of influenza A virus into H1, 2, 3, 5, 7, 9. N1 (human), N1 (animal), N2, and N7, including typing of novel swine origin influenza A (H1N1) virus, during the 2009 outbreak in Milwaukee, Wisconsin. J Clin Microbiol 2009, 47:2772-2778
9. Poon LL, Chan KH, Smith GJ, Leung CS, Guan Y, Yuen KY, Peiris JS: Molecular detection of a novel human influenza (H1N1) of pandemic potential by conventional and real-time quantitative RT-PCR assays. Clin Chem 2009, 55:1555-1558
10. Wang R, Sheng ZM, Taubenberger JK: Detection of novel (swine origin) H1N1 influenza A virus by quantitative real-time reverse transcription-PCR. J Clin Microbiol 2009, 47:2675-2677
11. Whiley DM, Bialasiewicz S, Bletchly C, Faux CE, Harrower B, Gould AR, Lambert SB, Nimmo GR, Nissen MD, Sloots TP: Detection of novel influenza A(H1N1) virus by real-time RT-PCR. J Clin Virol 2009, 45:203-204
12. Ginocchio CG, St George K: Likelihood that an unsubtypeable influenza A virus result obtained with the Luminex xTAG respiratory virus panel is indicative of infection with novel A/H1N1 (swine-like) influenza virus. J Clin Microbiol 2009, 47:2347-2348
13. Zheng X, Todd KM, Yen-Lieberman B, Kaul K, Nowak JA, Mangold K, Shulman ST: Unique finding of a 2009 H1N1 influenza virus suspect-positive clinical sample suggests possible sequence variation in the matrix gene. J Clin Microbiol 2010, 48:665-666
14. Fereidouni S, Beer M, Vahlenkamp T, Starick E: Differentiation of two distinct clusters among currently circulating influenza A(H1N1)v viruses, March-September 2009. Euro Surveill 2009, 14(46)
15. Peacey M, Hall RJ, Bocacao J, Huang QS: Diagnostic assay recommended by the world health organization for swine origin influenza a (H1N1) virus cross-reacts with H5N1 influenza virus. J Clin Microbiol 2009, 47:3789-3790
16. Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y: Evolution and ecology of influenza A viruses. Microbiol Rev 1992, 56:152-179