Energy dispersive x-ray microanalysis and its applications in biogeochemical research

Developments in Soil Science

Volumn 28, Issue PART A, 2002, Pages 219-260

  Jackson, T A ^a   Leppard, G G ^a  

^a ENVIRONMENT CANADA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 77956772411     PISSN: 01660918     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0166-2481(02)80055-1     Document Type: Article

References (80)

1. Stolp H. Microbial Ecology (1988), Cambridge University Press, Cambridge
2. Jackson T.A. The biogeochemical and ecological significance of interactions between colloidal minerals and trace elements. In: Parker A., and Rae J.E. (Eds). Environmental Interactions of Clays (1998), Springer, Berlin 93-205
3. Ferris F.S., Fyfe W.S., and Beveridge T.J. Bacteria as nucleation sites for authigenic minerals in a metal-contaminated lake sediment. Chem. Geol. 63 (1987) 225-232
4. Beveridge T.J. Metal ions and bacteria. In: Beveridge T.J., and Doyle R.J. (Eds). Metal Ions and Bacteria (1989), John Wiley & Sons, New York 1-29
5. Beveridge T.J. Role of cellular design in bacterial metal accumulation and mineralization. Ann. Rev. Microbiol. 43 (1989) 147-171
6. Doyle R.J. How cell walls of Gram-positive bacteria interact with metal ions. In: Beveridge T.J., and Doyle R.J. (Eds). Metal Ions and Bacteria (1989), John Wiley & Sons, New York 275-293
7. Ferris F.G. Metallic ion interactions with the outer membrane of Gram-negative bacteria. In: Beveridge T.J., and Doyle R.J. (Eds). Metal Ions and Bacteria (1989), John Wiley & Sons, New York 295-323
8. Ferris F.G., Shotyk W., and Fyfe W.S. Mineral formation and decomposition by microorganisms. In: Beveridge T.J., and Doyle R.J. (Eds). Metal Ions and Bacteria (1989), John Wiley & Sons, New York 413-441
9. Geesey G.G., and Jang L. Interactions between metal ions and capsular polymers. In: Beveridge T.J., and Doyle R.J. (Eds). Metal Ions and Bacteria (1989), John Wiley & Sons, New York 325-357
10. Kushner D.J. Effects of speciation of toxic metals on their biological activity. Water Pollut. Res. J. Canada 28 (1993) 111-128
11. Schultze-Lam S., Thompson J.B., and Beveridge T.J. Metal ion immobilization by bacterial surfaces in freshwater environments. Water Pollut. Res. J. Canada 28 (1993) 51-81
12. Silver S., Misra T.K., and Laddaga R.A. Bacterial resistance to toxic heavy metals. In: Beveridge T.J., and Doyle R.J. (Eds). Metal Ions and Bacteria (1989), John Wiley & Sons, New York 121-139
13. Jackson T.A., West M.M., and Leppard G.G. Accumulation of heavy metals by individually analyzed bacterial cells and associated nonliving material in polluted lake sediments. Environ. Sci. Technol. 33 (1999) 3795-3801
14. Roane T.M. Lead resistance in two bacterial isolates from heavy metalcontaminated soils. Microb. Ecol. 37 (1999) 218-224
15. Madsen E.L. Epistemology of environmental microbiology. Environ Sci. Technol. 32 (1998) 429-439
16. Tessier A., Fortin D., Belzile N., De Vitre R.R., and Leppard G.G. Metal sorption to diagenetic iron and manganese oxyhydroxides and associated organic matter: narrowing the gap between field and laboratory measurements. Geochim. Cosmochim. Acta 60 (1996) 387-404
17. Warren L.A., and Ferris F.G. Continuum between sorption and precipitation of Fe(III) on microbial surfaces. Environ. Sci. Technol. 32 (1998) 2331-2337
18. Wen X., Du Q., and Tang H. Surface complexation model for the heavy metal adsorption on natural sediment. Environ. Sci. Technol. 32 (1998) 870-875
19. Chandler J.A. X-ray Microanalysis in the Electron Microscope. In: Glauert A.M. (Ed). Practical Methods in Electron Microscopy Series (1977), North-Holland, Amsterdam
20. Heldal M., Norland S., and Tumyr O. X-ray microanalytic method for measurement of dry matter and elemental content of individual bacteria. Appl. Environ. Microbiol. 50 (1985) 1251-1257
21. Ferris F.G., Beveridge T.J., and Fyfe W.S. Iron-silica crystallite nucleation by bacteria in a geothermal sediment. Nature 320 (1986) 609-611
22. Mayers I.T., and Beveridge T.J. The sorption of metals to Bacillus subtilis walls from dilute solutions and simulated Hamilton Harbour (Lake Ontario) water. Can. J. Microbiol. 35 (1989) 764-770
23. Leppard G.G., Heissenberger A., and Herndl G.J. Ultrastructure of marine snow. I. Transmission electron microscopy methodology. Mar. Ecol. Prog. Ser. 135 (1996) 289-298
24. Fortin D., Leppard G.G., and Tessier A. Characteristics of lacustrine diagenetic iron oxyhydroxides. Geochim. Cosmochim. Acta 57 (1993) 4391-4404
25. nd Ed (1996), Plenum, New York
26. Mavrocordatos D., Lienemann C.-P., and Perret D. Energy filtered transmission electron microscopy for the physico-chemical characterization of aquatic submicron colloids. Mikrochim. Acta 117 (1994) 39-47
27. org)-rich particles in a complex peat-karst system. J. Hydrol. 237 (2000) 234-247
28. Leppard G.G. Evaluation of electron microscope techniques for the description of aquatic colloids. In: Buffle J., and van Leeuwen H.P. (Eds). Environmental Particles Vol. 1 (1992), Lewis, Boca Raton 231-289
29. Frosch D., and Westphal C. Melamine resins and their application in electron microscopy. Electron Microsc. Rev. 2 (1989) 231-255
30. Leppard G.G., and Buffle J. Aquatic colloids and macromolecules: effects on analysis. In: Meyers R.A. (Ed). Encyclopedia of Environmental Analysis and Remediation Vol. 1 (1998), John Wiley & Sons, New York 349-377
31. Perret D., Leppard G.G., Muller M., Belzile N., DeVitre R., and Buffle J. Electron microscopy of aquatic colloids: non-perturbing preparation of specimens in the field. Water Res. 25 (1991) 1333-1343
32. Liss S.N., Droppo I.G., Flannigan D.T., and Leppard G.G. Floc architecture in wastewater and natural riverine systems. Environ. Sci. Technol. 30 (1996) 680-686
33. Leppard G.G. Size, morphology and composition of particulates in aquatic ecosystems: solving speciation problems by correlative electron microscopy. Analyst 117 (1992) 595-603
34. Webb S.M., Leppard G.G., and Gaillard J.-F. Zinc speciation in a contaminated aquatic environment: characterization of environmental particles by analytical electron microscopy. Environ. Sci. Technol. 34 (2000) 1926-1933
35. Lienemann C.-P., Heissenberger A., Leppard G.G., and Perret D. Optimal preparation of water samples for the examination of colloidal material by transmission electron microscopy. Aquat. Microb. Ecol. 14 (1998) 205-213
36. Buffle J., DeVitre R.R., Perret D., and Leppard G.G. Physico-chemical characteristics of a colloidal iron phosphate species formed at the oxic-anoxic interface of a eutrophic lake. Geochim. Cosmochim. Acta 53 (1989) 399-408
37. Lienemann C.-P., Taillefert M., Perret D., and Gaillard J.-F. Association of cobalt and manganese in aquatic systems: chemical and microscopic evidence. Geochim. Cosmochim. Acta 61 (1997) 1437-1446
38. Buffle J., and Leppard G.G. Characterization of aquatic colloids and macromolecules. 2. Key role of physical structures on analytical results. Environ. Sci. Technol. 29 (1995) 2176-2184
39. Garvie L.A.J., and Buseck P.R. Ratios of ferrous to ferric iron from nanometre-sized areas in minerals. Nature 396 (1998) 667-670
40. Mavrocordatos D. Développement de la Microscopie Electronique Analytique pour la Caractérisation Physico-Chimique de Colloïdes Aquatiques. Ph. D. Dissertation (1997), University of Lausanne, Switzerland
41. Couture C., Lienemann C.-P., Mavrocordatos D., and Perret D. New directions towards the understanding of physico-chemical processes in aquatic systems. Chimia 50 (1996) 625-629
42. Brierley C.L., Brierley J.A., and Davidson M.S. Applied microbial processes for metals recovery and removal from wastewater. In: Beveridge T.J., and Doyle R.J. (Eds). Metal Ions and Bacteria (1989), John Wiley & Sons, New York 359-382
43. Beveridge T.J., and Murray R.G.E. Uptake and retention of metals by cell walls of Bacillus subtilis. J. Bacteriol. 127 (1976) 1502-1518
44. Mittelman M.W., and Geesey G.G. Copper-binding characteristics of exopolymers from a freshwater-sediment bacterium. Appl. Environ. Microbiol. 49 (1985) 846-851
45. Ferris F.G., and Beveridge T.J. Site specificity of metallic ion binding in Escherichia coli K-12 lipopolysaccharide. Can. J. Microbiol. 32 (1986) 52-55
46. Mullen M.D., Wolf D.C., Ferris F.G., Beveridge T.J., Flemming C.A., and Bailey G.W. Bacterial sorption of heavy metals. Appl. Environ. Microbiol. 55 (1989) 3143-3149
47. Schlekat C.E., Decho A.W., and Chandler G.T. Sorption of cadmium to bacterial extracellular polymeric sediment coatings under estuarine conditions. Environ. Toxicol. Chem. 17 (1998) 1867-1874
48. Johnson D.B. Microorganisms and the biogeochemical cycling of metals in aquatic environments. In: Langston W.J., and Bebianno M.J. (Eds). Metal Metabolism in Aquatic Environments (1998), Chapman & Hall, London 31-57
49. Hashemi F., Leppard G.G., and Kushner D.J. Copper resistance in Anabaena variabilis: effects of phosphate nutrition and polyphosphate bodies. Microb. Ecol. 27 (1994) 159-176
50. Urrutia Mera M., Kemper M., Doyle R., and Beveridge T.J. The membrane-induced proton motive force influences the metal binding ability of Bacillus subtilis cell walls. Appl. Environ. Microbiol. 58 (1992) 3837-3844
51. Leppard G.G. Colloidal organic fibrils of acid polysaccharides in surface waters: electron-optical characteristics, activities and chemical estimates of abundance. Colloids Surfaces, A: Physicochem. Eng. Aspects 120 (1997) 1-15
52. Ghiorse W.C. Biology of iron- and manganese-depositing bacteria. Ann. Rev. Microbiol. 38 (1984) 515-550
53. Nealson K.H., Rosson R.A., and Myers C.R. Mechanisms of oxidation and reduction of manganese. In: Beveridge T.J., and Doyle R.J. (Eds). Metal Ions and Bacteria (1989), John Wiley & Sons, New York 383-411
54. Jenne E.A. Controls on Mn, Fe, Co, Ni, Cu, and Zn concentrations in soils and water: the significant role of hydrous Mn and Fe oxides. In: American Chemical Society (Ed). Trace Inorganics in Water. Advances in Chemistry series no. 73 (1968), American Chemical Society, Washington 337-387
55. Lee G.F. Role of hydrous metal oxides in the transport of heavy metals in the environment. In: Krenkel P.A. (Ed). Heavy Metals in the Aquatic Environment (1975), Pergamon Press, Oxford 137-147
56. Tessier A., Fortin D., Belzile N., DeVitre R.R., and Leppard G.G. Metal sorption to diagenetic iron and manganese oxyhydroxides and associated organic matter: narrowing the gap between field and laboratory measurements. Geochim. Cosmochim. Acta 60 (1996) 387-404
57. Jackson T.A., and Bistricki T. Selective scavenging of copper, zinc, lead, and arsenic by iron and manganese oxyhydroxide coatings on plankton in lakes polluted with mine and smelter wastes: results of energy dispersive X-ray micro-analysis. J. Geochem. Explor. 52 (1995) 97-125
58. Jackson T.A. Mercury in aquatic ecosystems. In: Langston W.J., and Bebianno M.J. (Eds). Metal Metabolism in Aquatic Environments (1998), Chapman & Hall, London 77-158
59. Rozan T.F., Lassman M.E., Ridge D.P., and Luther III G.W. Evidence for iron, copper and zinc complexation as multinuclear sulphide clusters in oxic rivers. Nature 406 (2000) 879-882
60. Davis S.A., Burkett S.L., Mendelson N.H., and Mann S. Bacterial templating of ordered macrostructures in silica and silica-surfactant mesophases. Nature 385 (1997) 420-423
61. Urrutia M.M., and Beveridge T.J. Remobilization of heavy metals retained as oxyhydroxides or silicates by Bacillus subtilis cells. Appl. Environ. Microbiol. 59 (1993) 4323-4329
62. Schultze-Lam S., and Beveridge T.J. Nucleation of celestite and strontianite on a cyanobacterial S-layer. Appl. Environ. Microbiol. 60 (1994) 447-453
63. Ferris F.G., Schultze S., Witten T.C., Fyfe W.S., and Beveridge T.J. Metal interactions with microbial biofilms in acidic and neutral pH environments. Appl. Environ. Microbiol. 55 (1989) 1249-1257
64. Brown D.A., Kamineni D.C., Sawicki J.A., and Beveridge T.J. Minerals associated with biofilms occurring on exposed rock in a granitic underground research laboratory. Appl. Environ. Microbiol. 60 (1994) 3182-3191
65. Beveridge T.J., and Graham L. Surface layers of bacteria. Microbiol. Rev. 55 (1991) 684-705
66. Ferris F.G., Fyfe W.S., and Beveridge T.J. Manganese oxide deposition in a hot spring microbial mat. Geomicrobiol. J. 5 (1987) 33-42
67. Leppard G.G. Organic flocs in surface waters: their native state and aggregation behavior in relation to contaminant dispersion. In: Rao S.S. (Ed). Particulate Matter and Aquatic Contaminants (1993), Lewis Publishers, Boca Raton 169-195
68. Taillefert M., Lienemann C.-P., Gaillard J.-F., and Perret D. Speciation, reactivity, and cycling of Fe and Pb in a meromictic lake. Geochim. Cosmochim. Acta 64 (2000) 169-183
69. Cloud P. Beginnings of biospheric evolution and their biogeochemical consequences. Paleobiol. 2 (1976) 351-387
70. Reid R.P., Visscher P.T., Decho A.W., Stolz J.F., Bebout B.M., Dupraz C., Macintyre I.G., Paerl H.W., Pinckney J.L., Prufert-Bebout L., Steppe T.F., and DesMarais D.J. The role of microbes in accretion, lamination and early lithification of modern marine stromatolites. Nature 406 (2000) 989-992
71. Jackson T.A. The biogeochemistry of heavy metals in polluted lakes and streams at Flin Flon, Canada, and a proposed method for limiting heavy-metal pollution of natural waters. Environ. Geol. 2 (1978) 173-189
72. Jackson T.A. Comment on "Weathering, plants, and the long-term carbon cycle" by Robert A. Berner. Geochim. Cosmochim. Acta 57 (1993) 2141-2144
73. Beveridge T.J. The response of cell walls of Bacillus subtilis to metals and to electron-microscopic stains. Can. J. Microbiol. 24 (1978) 89-104
74. Beveridge T.J., and Murray R.G.E. Sites of metal deposition in the cell wall of Bacillus subtilis. J. Bacteriol. 141 (1980) 876-887
75. Beveridge T.J., and Koval S.F. Binding of metals to cell envelopes of Escherichia coli K-12. Appl. Environ. Microbiol. 42 (1981) 325-335
76. Beveridge T.J., Meloche J.D., Fyfe W.S., and Murray R.G.E. Diagenesis of metals chemically complexed to bacteria: laboratory formation of metal phosphates, sulfides, and organic condensates in artificial sediments. Appl. Environ. Microbiol. 45 (1983) 1094-1108
77. Perret D., Gaillard J.-F., Dominik J., and Atteia O. The diversity of natural hydrous iron oxides. Environ. Sci. Technol. 34 (2000) 3540-3546
78. Jackson T.A., and Keller W.D. A comparative study of the role of lichens and "inorganic" processes in the chemical weathering of recent Hawaiian lava flows. Amer. J. Sci. 269 (1970) 446-466
79. Jackson T.A., and Keller W.D. Evidence for biogenic synthesis of an unusual ferric oxide mineral during alteration of basalt by a tropical lichen. Nature 227 (1970) 522-523
80. Todd R.L., Cromack K., and Stormer Jr. J.C. Chemical exploration of the microhabitat by electron probe microanalysis of decomposer organisms. Nature 243 (1973) 544-546