Arthrobacter alpinus sp. nov., a psychrophilic bacterium isolated from alpine soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 9, 2010, Pages 2149-2153

  Zhang, De Chao ^a   Schumann, Peter ^b   Liu, Hong Can ^c   Xin, Yu Hua ^c   Zhou, Yu Guang ^c   Schinner, Franz ^a   Margesin, Rosa ^a  

^a UNIVERSITY OF INNSBRUCK   (Austria)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^c INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; GALACTOSE; GENOMIC DNA; MENAQUINONE; PEPTIDOGLYCAN; RHAMNOSE; RIBOSOME RNA; BACTERIAL DNA; RIBOSOME DNA; RNA 16S;

ARTHROBACTER; ARTHROBACTER ALPINUS; ARTHROBACTER PSYCHROLACTOPHILUS; ARTHROBACTER STACKEBRANDTII; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL STRUCTURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; PSYCHROPHILIC BACTERIUM; RNA SEQUENCE; CLASSIFICATION; COLD; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS;

ARTHROBACTER; COLD TEMPERATURE; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

ARTHROBACTER; ARTHROBACTER PSYCHROLACTOPHILUS; ARTHROBACTER STACKEBRANDTII; BACTERIA (MICROORGANISMS);

EID: 77956668318     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.017178-0     Document Type: Article

References (39)

1. Backman, A. & Jansson, J. (2004). Degradation of 4-chlorophenol at low temperature and during extreme temperature fluctuations by Arthrobacter chlorophenolicus A6. Microb Ecol 48, 246-253. (Pubitemid 40383327)
2. Cavicchioli, R. (2006). Cold-adapted archaea. Nature Rev Microbiol 4, 331-343.
3. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
4. Collins, M. D. & Jones, D. (1981). Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol Rev 45, 316-354.
5. Collins, M. D. & Kroppenstedt, R. M. (1983). Lipid composition as a guide to the classification of some coryneform bacteria containing an A4 type peptidoglycan (Schleifer and Kandler). Syst Appl Microbiol 4, 95-104.
6. Conn, H. J. & Dimmick, I. (1947). Soil bacteria similar in morphology to Mycobacterium and Corynebacterium. J Bacteriol 54, 291-303.
7. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
8. Feller, G. & Gerday, C. (2003). Psychrophilic enzymes: hot topics in cold adaptation. Nature Rev Microbiol 1, 200-208.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
10. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192. (Pubitemid 13066307)
11. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1288-1301. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
12. Koch, C., Schumann, P. & Stackebrandt, E. (1995). Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter. Int J Syst Bacteriol 45, 837-839.
13. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
14. Li, Y., Kawamura, Y., Fujiwara, N., Naka, T., Liu, H., Huang, X., Kobayashi, K. & Ezaki, T. (2004). Rothia aeria sp. nov., Rhodococcus baikonurensis sp. nov. and Arthrobacter russicus sp. nov., isolated from air in the Russian space laboratory Mir. Int J Syst Evol Microbiol 54, 827-835. (Pubitemid 38771786)
15. Loveland-Curtze, J., Sheridan, P. P., Gutshall, K. R. & Brenchley, J. E. (1999). Biochemical and phylogenetic analyses of psychrophilic isolates belonging to the Arthrobacter subgroup and description of Arthrobacter psychrolactophilus sp. nov. Arch Microbiol 171, 355-363. (Pubitemid 29262403)
16. MacKenzie, S. L. (1987). Gas chromatographic analysis of amino acids as the N-heptafluorobutyryl isobutyl esters. J Assoc Off Anal Chem 70, 151-160.
17. Margesin, R., Zacke, G. & Schinner, F. (2002). Characterization of heterotrophic microorganisms in alpine glacier cryoconite. Arct Antarct Alp Res 34, 88-93. (Pubitemid 34294531)
18. Margesin, R., Bergauer, B. & Gander, S. (2004a). Degradation of phenol and toxicity of phenolic compounds: a comparison of cold-tolerant Arthrobacter sp. and mesophilic Pseudomonas putida. Extremophiles 8, 201-207. (Pubitemid 40876325)
19. Margesin, R., Schumann, P., Spröer, C. & Gounot, A. M. (2004b). Arthrobacter psychrophenolicus sp. nov., isolated from an alpine ice cave. Int J Syst Evol Microbiol 54, 2067-2072. (Pubitemid 39585390)
20. Margesin, R., Schinner, F., Marx, J. C. & Gerday, C. (2008). Psychrophiles: from Biodiversity to Biotechnology. Berlin: Springer.
21. Margesin, R., Jud, M., Tscherko, D. & Schinner, F. (2009). Microbial communities and activities in alpine and subalpine soils. FEMS Microbiol Ecol 67, 208-218.
22. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
23. Minnikin, D. E., Goodfellow, M. & Collins, M. D. (1978). Coryneform bacteria. In Lipid Composition in the Classification and Identification of Coryneform and Related Taxa, pp. 85-160. Edited by I. J. Bousfield & A. G. Callely. London: Academic Press.
24. Morita, R. Y. (1975). Psychrophilic bacteria. Bacteriol Rev 39, 144-167.
25. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
26. Reddy, G. S. N., Aggarwal, R. K., Matsumoto, G. I., Stackebrandt, E. & Shivaji, S. (2000). Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica. Int J Syst Evol Microbiol 50, 1553-1561.
27. Reddy, G. S. N., Prakash, J. S. S., Matsumoto, G. I., Stackebrandt, E. & Shivaji, S. (2002). Arthrobacter roseus sp. nov., a psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int J Syst Evol Microbiol 52, 1017-1021. (Pubitemid 34591234)
28. Sambrook, J., Frisch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
29. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
30. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
31. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
32. Stackebrandt, E. & Schumann, P. (2006). Introduction to the taxonomy of actinobacteria. In The Prokaryotes. A Handbook on the Biology of Bacteria, 3rd edn, vol. 3, pp. 297-321. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
33. Stackebrandt, E., Fowler, V. J., Fiedler, F. & Seiler, H. (1983). Taxonomic studies on Arthrobacter nicotianae and related taxa: description of Arthrobacter uratoxydans sp. nov. and Arthrobacter sulfureus sp. nov. and reclassification of Brevibacterium protophormiae as Arthrobacter protophormiae comb. nov. Syst Appl Microbiol 4, 470-486. (Pubitemid 14187751)
34. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
35. Tvrzová, L., Schumann, P., Spröer, C., Sedláč ek, I., Verbarg, S., Kroppenstedt, R. M. & Páčová, Z. (2005). Polyphasic taxonomic study of strain CCM 2783 resulting in the description of Arthrobacter stackebrandtii sp. nov. Int J Syst Evol Microbiol 55, 805-808.
36. Westerberg, K., Elväng, A. M., Stackebrandt, E. & Jansson, J. K. (2000). Arthrobacter chlorophenolicus sp. nov., a new species capable of degrading high concentrations of 4-chlorophenol. Int J Syst Evol Microbiol 50, 2083-2092. (Pubitemid 32049560)
37. Whiton, R. S., Lau, P., Morgan, S. L., Gilbart, J. & Fox, A. (1985). Modifications in the alditol acetate method for analysis of muramic acid and other neutral and amino sugars by capillary gas chromatography-mass spectrometry with selected ion monitoring. J Chromatogr A 347, 109-120. (Pubitemid 16225426)
38. Wu, C., Lu, X., Qin, M., Wang, Y. & Ruan, J. (1989). Analysis of menaquinone compound in microbial cells by HPLC. Microbiology [English translation of Microbiology (Beijing)] 16, 176-178.
39. Zhang, D.-C., Wang, H.-X., Liu, H.-C., Dong, X.-Z. & Zhou, P.-J. (2006). Flavobacterium glaciei sp. nov., a novel psychrophilic bacterium isolated from the China No.1 glacier. Int J Syst Evol Microbiol 56, 2921-2925.