메뉴 건너뛰기




Volumn 60, Issue 9, 2010, Pages 2094-2098

Pseudomonas taiwanensis sp. nov., isolated from soil

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DNA BASE; FATTY ACID; RNA 16S; RIBOSOME DNA;

EID: 77956654756     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.014779-0     Document Type: Review
Times cited : (45)

References (35)
  • 2
    • 34249012407 scopus 로고    scopus 로고
    • Pseudomonas reinekei sp. nov., Pseudomonas moorei sp. nov. and Pseudomonas mohnii sp. nov., novel species capable of degrading chlorosalicylates or isopimaric acid
    • DOI 10.1099/ijs.0.64703-0
    • Cámara, B., Strömpl, C., Verbarg, S., Spröer, C., Pieper, D. H. & Tindall, B. J. (2007). Pseudomonas reinekei sp. nov., Pseudomonas moorei sp. nov. and Pseudomonas mohnii sp. nov., novel species capable of degrading chlorosalicylates or isopimaric acid. Int J Syst Evol Microbiol 57, 923-931. (Pubitemid 46796462)
    • (2007) International Journal of Systematic and Evolutionary Microbiology , vol.57 , Issue.5 , pp. 923-931
    • Camara, B.1    Strompl, C.2    Verbarg, S.3    Sproer, C.4    Pieper, D.H.5    Tindall, B.J.6
  • 3
    • 0003122014 scopus 로고
    • Isoprenoid quinone analysis in classification and identification
    • Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press
    • Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
    • (1985) Chemical Methods in Bacterial Systematics , pp. 267-287
    • Collins, M.D.1
  • 4
    • 0019860493 scopus 로고
    • A note on the separation of natural mixtures of bacterial ubiquinones using reverse-phase partition thinlayer chromatography and high performance liquid chromatography
    • Collins, M. D. & Jones, D. (1981). A note on the separation of natural mixtures of bacterial ubiquinones using reverse-phase partition thinlayer chromatography and high performance liquid chromatography. J Appl Bacteriol 51, 129-134.
    • (1981) J Appl Bacteriol , vol.51 , pp. 129-134
    • Collins, M.D.1    Jones, D.2
  • 7
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229. (Pubitemid 19175038)
    • (1989) International Journal of Systematic Bacteriology , vol.39 , Issue.3 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 8
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 9
    • 0021581577 scopus 로고
    • Distance methods for inferring phylogenies: A justification
    • Felsenstein, J. (1984). Distance methods for inferring phylogenies: a justification. Evolution 38, 16-24.
    • (1984) Evolution , vol.38 , pp. 16-24
    • Felsenstein, J.1
  • 10
    • 0003437299 scopus 로고    scopus 로고
    • version 3.65. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • Felsenstein, J. (2005). PHYLIP (phylogeny inference package), version 3.65. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
    • (2005) PHYLIP (Phylogeny Inference Package)
    • Felsenstein, J.1
  • 11
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
    • (1971) Syst Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 12
    • 0032434673 scopus 로고    scopus 로고
    • Evaluation of a microplate DNA - DNA hybridization method compared with the initial renaturation method
    • Goris, J., Suzuki, K., De Vos, P., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153. (Pubitemid 29183724)
    • (1998) Canadian Journal of Microbiology , vol.44 , Issue.12 , pp. 1148-1153
    • Goris, J.1    Suzuki, K.-I.2    De Vos, P.3    Nakase, T.4    Kersters, K.5
  • 13
    • 0034821125 scopus 로고    scopus 로고
    • Analytical precision and repeatability of respiratory quinones for quantitative study of microbial community structure in environmental samples
    • Hu, H. Y., Lim, B. R., Goto, N. & Fujie, K. (2001). Analytical precision and repeatability of respiratory quinones for quantitative study of microbial community structure in environmental samples. J Microbiol Methods 47, 17-24.
    • (2001) J Microbiol Methods , vol.47 , pp. 17-24
    • Hu, H.Y.1    Lim, B.R.2    Goto, N.3    Fujie, K.4
  • 15
    • 77956800518 scopus 로고
    • Lipid and cell-wall analysis in bacterial systematics
    • Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-208.
    • (1987) Methods Microbiol , vol.19 , pp. 161-208
    • Komagata, K.1    Suzuki, K.2
  • 16
    • 55849135185 scopus 로고    scopus 로고
    • Phylogenetic analysis and siderotyping as useful tools in the taxonomy of Pseudomonas stutzeri: Description of a novel genomovar
    • Mulet, M., Gomila, M., Gruffaz, C., Meyer, J. M., Palleroni, N. J., Lalucat, J. & García-Valdés, E. (2008). Phylogenetic analysis and siderotyping as useful tools in the taxonomy of Pseudomonas stutzeri: description of a novel genomovar. Int J Syst Evol Microbiol 58, 2309-2315.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2309-2315
    • Mulet, M.1    Gomila, M.2    Gruffaz, C.3    Meyer, J.M.4    Palleroni, N.J.5    Lalucat, J.6    García-Valdés, E.7
  • 17
    • 0033965719 scopus 로고    scopus 로고
    • Pseudomonas plecoglossicida sp. nov., the causative agent of bacterial haemorrhagic ascites of ayu, Plecoglossus altivelis
    • Nishimori, E., Kita-Tsukamoto, K. & Wakabayashi, H. (2000). Pseudomonas plecoglossicida sp. nov., the causative agent of bacterial haemorrhagic ascites of ayu, Plecoglossus altivelis. Int J Syst Evol Microbiol 50, 83-89.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 83-89
    • Nishimori, E.1    Kita-Tsukamoto, K.2    Wakabayashi, H.3
  • 18
    • 0020555213 scopus 로고
    • Grouping of Pseudomonas species on the basis of cellular fatty acid composition and the quinone system with special reference to the existence of 3-hydroxy fatty acids
    • Oyaizu, H. & Komagata, K. (1983). Grouping of Pseudomonas species on the basis of cellular fatty acid composition and the quinone system with special reference to the existence of 3-hydroxy fatty acids. J Gen Appl Microbiol 29, 17-40.
    • (1983) J Gen Appl Microbiol , vol.29 , pp. 17-40
    • Oyaizu, H.1    Komagata, K.2
  • 19
    • 0000803252 scopus 로고
    • Genus I. Pseudomonas Migula 1894
    • Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins
    • Palleroni, N. J. (1984). Genus I. Pseudomonas Migula 1894. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 141-199. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
    • (1984) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 141-199
    • Palleroni, N.J.1
  • 20
    • 41649117595 scopus 로고    scopus 로고
    • Pseudomonas japonica sp. nov., a novel species that assimilates straight chain alkylphenols
    • Pungrasmi, W., Lee, H. S., Yokota, A. & Ohta, A. (2008). Pseudomonas japonica sp. nov., a novel species that assimilates straight chain alkylphenols. J Gen Appl Microbiol 54, 61-69.
    • (2008) J Gen Appl Microbiol , vol.54 , pp. 61-69
    • Pungrasmi, W.1    Lee, H.S.2    Yokota, A.3    Ohta, A.4
  • 21
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 22
    • 0141810217 scopus 로고
    • Identification of bacteria by gas chromatography of cellular fatty acids
    • Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
    • (1990) USFCC Newsl , vol.20 , pp. 16
    • Sasser, M.1
  • 23
    • 0019847241 scopus 로고
    • Numerical taxonomy of Pseudomonas based on published record of substrate utilization
    • Sneath, P. H. A., Stevens, M. & Sackin, M. J. (1981). Numerical taxonomy of Pseudomonas based on published record of substrate utilization. Antonie van Leeuwenhoek 47, 423-448.
    • (1981) Antonie Van Leeuwenhoek , vol.47 , pp. 423-448
    • Sneath, P.H.A.1    Stevens, M.2    Sackin, M.J.3
  • 24
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 26
    • 0021715576 scopus 로고
    • Determination of DNA base composition by reversed-phase high-performance liquid chromatography
    • Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
    • (1984) FEMS Microbiol Lett , vol.25 , pp. 125-128
    • Tamaoka, J.1    Komagata, K.2
  • 27
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 28
    • 0035719847 scopus 로고    scopus 로고
    • Recharacterization of Pseudomonas fulva Iizuka and Komagata 1963, and proposals of Pseudomonas parafulva sp. nov. and Pseudomonas cremoricolorata sp. nov
    • Uchino, M., Shida, O., Uchimura, T. & Komagata, K. (2001). Recharacterization of Pseudomonas fulva Iizuka and Komagata 1963, and proposals of Pseudomonas parafulva sp. nov. and Pseudomonas cremoricolorata sp. nov. J Gen Appl Microbiol 47, 247-261.
    • (2001) J Gen Appl Microbiol , vol.47 , pp. 247-261
    • Uchino, M.1    Shida, O.2    Uchimura, T.3    Komagata, K.4
  • 29
    • 0030479865 scopus 로고    scopus 로고
    • Fatty acid content in whole-cell hydrolysates and phospholipid fractions of pseudomonads: A taxonomic evaluation
    • Vancanneyt, M., Witt, S., Abraham, W.-R., Kersters, K. & Fredrickson, H. L. (1996). Fatty acid content in whole-cell hydrolysates and phospholipid fractions of pseudomonads: a taxonomic evaluation. Syst Appl Microbiol 19, 528-540.
    • (1996) Syst Appl Microbiol , vol.19 , pp. 528-540
    • Vancanneyt, M.1    Witt, S.2    Abraham, W.-R.3    Kersters, K.4    Fredrickson, H.L.5
  • 30
    • 34548173505 scopus 로고    scopus 로고
    • Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA-DNA hybridization in the Bacillus subtilis group
    • Wang, L. T., Lee, F. L., Tai, C. J. & Kasai, H. (2007). Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA-DNA hybridization in the Bacillus subtilis group. Int J Syst Evol Microbiol 57, 1846-1850.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 1846-1850
    • Wang, L.T.1    Lee, F.L.2    Tai, C.J.3    Kasai, H.4
  • 31
    • 0017659594 scopus 로고
    • Simplified silver-plating stain for flagella
    • West, M., Burdash, N. M. & Freimuth, F. (1977). Simplified silver-plating stain for flagella. J Clin Microbiol 6, 414-419.
    • (1977) J Clin Microbiol , vol.6 , pp. 414-419
    • West, M.1    Burdash, N.M.2    Freimuth, F.3
  • 32
    • 0028948030 scopus 로고
    • PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains
    • Yamamoto, S. & Harayama, S. (1995). PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61, 1104-1109.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1104-1109
    • Yamamoto, S.1    Harayama, S.2
  • 33
    • 0031827993 scopus 로고    scopus 로고
    • Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes
    • Yamamoto, S. & Harayama, S. (1998). Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes. Int J Syst Bacteriol 48, 813-819.
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 813-819
    • Yamamoto, S.1    Harayama, S.2
  • 34
    • 0032931780 scopus 로고    scopus 로고
    • Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: Comparison with the grouping by DNA-DNA hybridization
    • Yamamoto, S., Bouvet, P. J. M. & Harayama, S. (1999). Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: comparison with the grouping by DNA-DNA hybridization. Int J Syst Bacteriol 49, 87-95.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 87-95
    • Yamamoto, S.1    Bouvet, P.J.M.2    Harayama, S.3
  • 35
    • 0033764790 scopus 로고    scopus 로고
    • Phylogeny of the genus Pseudomonas: Intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes
    • Yamamoto, S., Kasai, H., Arnold, D. L., Jackson, R. W., Vivian, A. & Harayama, S. (2000). Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146, 2385-2394.
    • (2000) Microbiology , vol.146 , pp. 2385-2394
    • Yamamoto, S.1    Kasai, H.2    Arnold, D.L.3    Jackson, R.W.4    Vivian, A.5    Harayama, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.