Novel amidinating cross-linker for facilitating analyses of protein structures and interactions

Analytical Chemistry

Volumn 82, Issue 18, 2010, Pages 7736-7743

  Lauber, Matthew A ^a   Reilly, James P ^a  

^a INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIFUNCTIONAL; COMPLEX SYSTEMS; CROSS-LINKING REAGENTS; CROSSLINKER; CYTOCHROME C; ELECTROSTATIC PROPERTIES; INTERMOLECULAR CROSSLINKING; NATIVE PROTEINS; NEUROTENSIN; PHYSIOLOGICAL CONDITION; PROTEIN CROSSLINKING; PROTEIN STRUCTURES; STRONG CATION EXCHANGES;

STRUCTURAL ANALYSIS;

AMIDE; AMINE; CROSS LINKING REAGENT; CYTOCHROME C; IMIDOESTER; PROTEIN; THIOL DERIVATIVE;

ANIMAL; ARTICLE; CATTLE; CHEMISTRY; ION EXCHANGE CHROMATOGRAPHY; METABOLISM; PH; PROTEIN BINDING; SYNTHESIS;

AMIDES; AMINES; ANIMALS; CATTLE; CHROMATOGRAPHY, ION EXCHANGE; CROSS-LINKING REAGENTS; CYTOCHROMES C; HYDROGEN-ION CONCENTRATION; IMIDOESTERS; PROTEIN BINDING; PROTEINS; SULFHYDRYL COMPOUNDS;

EID: 77956575647     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac101586z     Document Type: Article

References (43)

1. Das, M. and Fox, C. F. Annu. Rev. Biophys. Bioeng. 1979, 8, 165-93
2. Singh, P., Panchaud, A., and Goodlett, D. R. Anal. Chem. 2010, 82 (7) 2636-2642
3. Novak, P. and Giannakopulos, A. E. Eur. J. Mass Spectrom. 2007, 13 (2) 105-113
4. Kluger, R. and Alagic, A. Bioorg. Chem. 2004, 32 (6) 451-472
5. Peters, K. and Richards, F. M. Annu. Rev. Biochem. 1977, 46, 523-51
6. Vasilescu, J. and Figeys, D. Curr. Opin. Biotechnol. 2006, 17 (4) 394-9
7. Trakselis, M. A., Alley, S. C., and Ishmael, F. T. Bioconjugate Chem. 2005, 16 (4) 741-750
8. Loster, K. and Josic, D. J. Chromatogr. B Biomed. Sci. Appl. 1997, 699 (1-2) 439-61
9. Sinz, A. Mass Spectrom. Rev. 2006, 25 (4) 663-82
10. Young, M. M., Tang, N., Hempel, J. C., Oshiro, C. M., Taylor, E. W., Kuntz, I. D., Gibson, B. W., and Dollinger, G. Proc. Natl. Acad. Sci. U. S. A. 2000, 97 (11) 5802-6
11. Forwood, J. K., Thakur, A. S., Guncar, G., Marfori, M., Mouradov, D., Meng, W., Robinson, J., Huber, T., Kellie, S., Martin, J. L., Hume, D. A., and Kobe, B. Proc. Natl. Acad. Sci. U. S. A. 2007, 104 (25) 10382-7
12. Lanman, J., Lam TuKiet, T., Barnes, S., Sakalian, M., Emmett, M. R., Marshall, A. G., and Prevelige, P. E., Jr. J. Mol. Biol. 2003, 325 (4) 759-72
13. Back, J. W., Sanz, M. A., De Jong, L., De Koning, L. J., Nijtmans, L. G. J., De Koster, C. G., Grivell, L. A., Van Der Spek, H., and Muijsers, A. O. Protein Sci. 2002, 11 (10) 2471-2478
14. Chowdhury, S. M., Du, X., Tolic, N., Wu, S., Moore, R. J., Mayer, M. U., Smith, R. D., and Adkins, J. N. Anal. Chem. 2009, 81 (13) 5524-32
15. Tang, X., Munske, G. R., Siems, W. F., and Bruce, J. E. Anal. Chem. 2005, 77 (1) 311-318
16. Trester-Zedlitz, M., Kamada, K., Burley, S. K., Fenyoe, D., Chait, B. T., and Muir, T. W. J. Am. Chem. Soc. 2003, 125 (9) 2416-2425
17. Yan, F., Che, F.-Y., Rykunov, D., Nieves, E., Fiser, A., Weiss, L. M., and Hogue Angeletti, R. Anal. Chem. 2009, 81 (17) 7149-7159
18. Hunter, M. J. and Ludwig, M. L. Methods Enzymol. 1972, 25 (Pt. B) 585-96
19. Hermanson, G. T.; Ed., Bioconjugate Techniques; Academic Press: San Diego, 1995.
20. Browne, D. T. and Kent, S. B. H. Biochem. Biophys. Res. Commun. 1975, 67 (1) 133-8
21. Browne, D. T. and Kent, S. B. H. Biochem. Biophys. Res. Commun. 1975, 67 (1) 126-32
22. Dihazi, G. H. and Sinz, A. Rapid Commun. Mass Spectrom. 2003, 17 (17) 2005-2014
23. Thumm, M., Hoenes, J., and Pfleiderer, G. Biochim. Biophys. Acta 1987, 923 (2) 263-7
24. Running, W. E. and Reilly, J. P. J. Proteome Res. 2009, 8 (3) 1228-1246
25. Liu, X. and Reilly, J. P. J. Proteome Res. 2009, 8 (10) 4466-4478
26. Lauber, M. A., Running, W. E., and Reilly, J. P. J. Proteome Res. 2009, 8 (9) 4193-4206
27. Liu, X., Broshears, W. C., and Reilly, J. P. Anal. Biochem. 2007, 367 (1) 13-19
28. Beardsley, R. L., Running, W. E., and Reilly, J. P. J. Proteome Res. 2006, 5 (11) 2935-2946
29. Janecki, D. J., Beardsley, R. L., and Reilly, J. P. Anal. Chem. 2005, 77 (22) 7274-7281
30. Roger, R. and Neilson, D. G. Chem. Rev. 1961, 61, 179-211
31. Rinner, O., Seebacher, J., Walzthoeni, T., Mueller Lukas, N., Beck, M., Schmidt, A., Mueller, M., and Aebersold, R. Nat. Methods 2008, 5 (4) 315-8
32. DeLano, W. L. The PyMOL Molecular Graphics System; DeLano Scientific: Palo Alto, CA, 2002.
33. Bushnell, G. W., Louie, G. V., and Brayer, G. D. J. Mol. Biol. 1990, 214 (2) 585-95
34. Lee, Y. J., Lackner, L. L., Nunnari, J. M., and Phinney, B. S. J. Proteome Res. 2007, 6 (10) 3908-17
35. Cole, R. B. J. Mass Spectrom. 2000, 35 (7) 763-72
36. Gardner, M. W. and Brodbelt, J. S. J. Am. Soc. Mass Spectrom. 2008, 19 (3) 344-357
37. Schilling, B., Row Richard, H., Gibson Bradford, W., Guo, X., and Young, M. M. J. Am. Soc. Mass Spectrom. 2003, 14 (8) 834-50
38. Gaucher, S. P., Hadi, M. Z., and Young, M. M. J. Am. Soc. Mass Spectrom. 2006, 17 (3) 395-405
39. King, G., Jones, A., Kobe, B., Huber, T., Mouradov, D., Hume, D., and Ross, I. Anal. Chem. 2008, 80, 5036-5043
40. Voet, D. and Voet, J. G. In Biochemistry, 3 rd ed.; J. Wiley & Sons: Hoboken, NJ, 2004; p 67.
41. Monigatti, F. and Berndt, P. J. Am. Soc. Mass Spectrom. 2005, 16 (1) 13-21
42. Yen, C.-Y., Russell, S., Mendoza, A. M., Meyer-Arendt, K., Sun, S., Cios, K. J., Ahn, N. G., and Resing, K. A. Anal. Chem. 2006, 78 (4) 1071-1084
43. Alves, P., Arnold, R. J., Clemmer, D. E., Li, Y., Reilly, J. P., Sheng, Q., Tang, H., Xun, Z., Zeng, R., and Radivojac, P. Bioinformatics 2008, 24 (1) 102-109