The paralogous MarR/DUF24-family repressors YodB and CatR control expression of the catechol dioxygenase CatE in Bacillus subtilis

Journal of Bacteriology

Volumn 192, Issue 18, 2010, Pages 4571-4581

  Chi, Bui Khanh ^a   Kobayashi, Kazuo ^b   Albrecht, Dirk ^a   Hecker, Michael ^a   Antelmann, Haike ^a  

^a UNIVERSITY OF GREIFSWALD   (Germany)

^b NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AZO REDUCTASE; AZOR1; CATECHOL 2,3 DIOXYGENASE; DIAMIDE; DISULFIDE; NITROREDUCTASE; QUINONE DERIVATIVE; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; CATR PROTEIN, BACTERIA; DNA BINDING PROTEIN; TRANSCRIPTION FACTOR;

ANIMAL CELL; ARTICLE; BACILLUS SUBTILIS; DETOXIFICATION; DNA BINDING; IN VITRO STUDY; MASS SPECTROMETRY; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN CROSS LINKING; PROTEIN INTERACTION; REDOX STRESS; DNA FOOTPRINTING; ENZYMOLOGY; GEL MOBILITY SHIFT ASSAY; GENE EXPRESSION REGULATION; GENETICS; IMMUNOPRECIPITATION; METABOLISM; NORTHERN BLOTTING; PHYSIOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN BINDING; WESTERN BLOTTING;

BACILLUS SUBTILIS;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; BLOTTING, NORTHERN; BLOTTING, WESTERN; CATECHOL 2,3-DIOXYGENASE; DNA FOOTPRINTING; DNA-BINDING PROTEINS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE EXPRESSION REGULATION, BACTERIAL; IMMUNOPRECIPITATION; PROTEIN BINDING; TRANSCRIPTION FACTORS;

EID: 77956549617     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00409-10     Document Type: Article

References (32)

1. Antelmann, H., M. Hecker, and P. Zuber. 2008. Proteomic signatures uncover thiol-specific electrophile resistance mechanisms in Bacillus subtilis. Expert Rev. Proteomics 5:77-90. (Pubitemid 351287743)
2. Barbe, V., S. Cruveiller, F. Kunst, P. Lenoble, G. Meurice, A. Sekowska, D. Vallenet, T. Wang, I. Moszer, C. Medigue, and A. Danchin. 2009. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Microbiology 155:1758-1775.
3. Bhavsar, A. P., X. Zhao, and E. D. Brown. 2001. Development and characterization of a xylose-dependent system for expression of cloned genes in Bacillus subtilis: conditional complementation of a teichoic acid mutant. Appl. Environ. Microbiol. 67:403-410.
4. Chi, B. K., D. Albrecht, K. Gronau, D. Becher, M. Hecker, and H. Antelmann. 2010. The redox-sensing regulator YodB senses quinones and diamide via a thiol-disulfide switch in Bacillus subtilis. Proteomics doi:10.1002/pmic.201000230.
5. Ehira, S., H. Ogino, H. Teramoto, M. Inui, and H. Yukawa. 2009. Regulation of quinone oxidoreductase by the redox-sensing transcriptional regulator QorR in Corynebacterium glutamicum. J. Biol. Chem. 284:16736-16742.
6. Fuangthong, M., and J. D. Helmann. 2002. The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative. Proc. Natl. Acad. Sci. U. S. A. 99:6690-6695.
7. Guérout-Fleury, A. M., K. Shazand, N. Frandsen, and P. Stragier. 1995. Antibiotic-resistance cassettes for Bacillus subtilis. Gene 167:335-336.
8. Hayashi, K., T. Kensuke, K. Kobayashi, N. Ogasawara, and M. Ogura. 2006. Bacillus subtilis RghR (YvaN) represses rapG and rapH, which encode inhibitors of expression of the srfA operon. Mol. Microbiol. 59:1714-1729.
9. Hochgräfe, F., J. Mostertz, D. Albrecht, and M. Hecker. 2005. Fluorescence thiol modification assay: oxidatively modified proteins in Bacillus subtilis. Mol. Microbiol. 58:409-425.
10. Hochgräfe, F., J. Mostertz, D. C. Pöther, D. Becher, J. D. Helmann, and M. Hecker. 2007. S-Cysteinylation is a general mechanism for thiol protection of Bacillus subtilis proteins after oxidative stress. J. Biol. Chem. 282:25981-25985.
11. Jürgen, B., S. Tobisch, M. Wumpelmann, D. Gordes, A. Koch, K. Thurow, D. Albrecht, M. Hecker, and T. Schweder. 2005. Global expression profiling of Bacillus subtilis cells during industrial-close fed-batch fermentations with different nitrogen sources. Biotechnol. Bioeng. 92:277-298.
12. Kobayashi, K. 2007. Bacillus subtilis pellicle formation proceeds through genetically defined morphological changes. J. Bacteriol. 189:4920-4931.
13. Kumagai, Y., S. Koide, K. Taguchi, A. Endo, Y. Nakai, T. Yoshikawa, and N. Shimojo. 2002. Oxidation of proximal protein sulfhydryls by phenanthraquinone, a component of diesel exhaust particles. Chem. Res. Toxicol. 15:483-489.
14. Lee, J. W., S. Soonsanga, and J. D. Helmann. 2007. A complex thiolate switch regulates the Bacillus subtilis organic peroxide sensor OhrR. Proc. Natl. Acad. Sci. U. S. A. 104:8743-8748.
15. Leelakriangsak, M., N. T. Huyen, S. Töwe, N. van Duy, D. Becher, M. Hecker, H. Antelmann, and P. Zuber. 2008. Regulation of quinone detoxification by the thiol stress sensing DUF24/MarR-like repressor, YodB in Bacillus subtilis. Mol. Microbiol. 67:1108-1124.
16. Leelakriangsak, M., K. Kobayashi, and P. Zuber. 2007. Dual negative control of spx transcription initiation from the P3 promoter by repressors PerR and YodB in Bacillus subtilis. J. Bacteriol. 189:1736-1744.
17. Leichert, L. I., and U. Jakob. 2006. Global methods to monitor the thioldisulfide state of proteins in vivo. Antioxid. Redox. Signal. 8:763-772.
18. Liebeke, M., D. C. Pöther, N. van Duy, D. Albrecht, D. Becher, F. Hochgräfe, M. Lalk, M. Hecker, and H. Antelmann. 2008. Depletion of thiol-containing proteins in response to quinones in Bacillus subtilis. Mol. Microbiol. 69:1513-1529.
19. Majumdar, D., Y. J. Avissar, and J. H. Wyche. 1991. Simultaneous and rapid isolation of bacterial and eukaryotic DNA and RNA: a new approach for isolating DNA. Biotechniques 11:94-101.
20. Monks, T. J., R. P. Hanzlik, G. M. Cohen, D. Ross, and D. G. Graham. 1992. Quinone chemistry and toxicity. Toxicol. Appl. Pharmacol. 112:2-16.
21. Nakano, S., K. N. Erwin, M. Ralle, and P. Zuber. 2005. Redox-sensitive transcriptional control by a thiol/disulphide switch in the global regulator, Spx. Mol. Microbiol. 55:498-510.
22. Nakano, S., E. Kuster-Schock, A. D. Grossman, and P. Zuber. 2003. Spx-dependent global transcriptional control is induced by thiol-specific oxidative stress in Bacillus subtilis. Proc. Natl. Acad. Sci. U. S. A. 100:13603-13608.
23. Newton, G. L., M. Rawat, J. J. La Clair, V. K. Jothivasan, T. Budiarto, C. J. Hamilton, A. Claiborne, J. D. Helmann, and R. C. Fahey. 2009. Bacillithiol is an antioxidant thiol produced in bacilli. Nat. Chem. Biol. 5:625-627.
24. Nguyen, V. D., C. Wolf, U. Mäder, M. Lalk, P. Langer, U. Lindequist, M. Hecker, and H. Antelmann. 2007. Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis. Proteomics 7:1391-1408.
25. O'Brien, P. J. 1991. Molecular mechanisms of quinone cytotoxicity. Chem. Biol. Interact. 80:1-41.
26. Panmanee, W., P. Vattanaviboon, L. B. Poole, and S. Mongkolsuk. 2006. Novel organic hydroperoxide-sensing and responding mechanisms for OhrR, a major bacterial sensor and regulator of organic hydroperoxide stress. J. Bacteriol. 188:1389-1395. (Pubitemid 43228671)
27. Pöther, D. C., M. Liebeke, F. Hochgräfe, H. Antelmann, D. Becher, M. Lalk, U. Lindequist, I. Borovok, G. Cohen, Y. Aharonowitz, and M. Hecker. 2009. Diamide triggers mainly S thiolations in the cytoplasmic proteomes of Bacillus subtilis and Staphylococcus aureus. J. Bacteriol. 191:7520-7530.
28. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. U. S. A. 74:5463-5467.
29. Stülke, J., R. Hanschke, and M. Hecker. 1993. Temporal activation of beta-glucanase synthesis in Bacillus subtilis is mediated by the GTP pool. J. Gen. Microbiol. 139:2041-2045.
30. Tam le, T., C. Eymann, D. Albrecht, R. Sietmann, F. Schauer, M. Hecker, and H. Antelmann. 2006. Differential gene expression in response to phenol and catechol reveals different metabolic activities for the degradation of aromatic compounds in Bacillus subtilis. Environ. Microbiol. 8:1408-1427.
31. Töwe, S., M. Leelakriangsak, K. Kobayashi, N. Van Duy, M. Hecker, P. Zuber, and H. Antelmann. 2007. The MarR-type repressor MhqR (YkvE) regulates multiple dioxygenases/glyoxalases and an azoreductase which confer resistance to 2-methylhydroquinone and catechol in Bacillus subtilis. Mol. Microbiol. 66:40-54.
32. Wetzstein, M., U. Volker, J. Dedio, S. Löbau, U. Zuber, M. Schiesswohl, C. Herget, M. Hecker, and W. Schumann. 1992. Cloning, sequencing, and molecular analysis of the dnaK locus from Bacillus subtilis. J. Bacteriol. 174:3300-3310.