Noncovalent interaction of oxytetracycline with the enzyme trypsin

Biomacromolecules

Volumn 11, Issue 9, 2010, Pages 2454-2459

  Chi, Zhenxing ^a   Liu, Rutao ^a   Zhang, Hao ^a  

^a SHANDONG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL FOODS; ASSOCIATION CONSTANT; BINDING MODES; BINDING POCKETS; IN-VIVO; INNER FILTER EFFECTS; MICROENVIRONMENTS; MOLECULAR DOCKING; MOLECULAR MECHANISM; NEGATIVE VALUES; NEW STRATEGY; NON-COVALENT INTERACTION; SECONDARY STRUCTURES; THERMODYNAMIC PARAMETER; TRYPTOPHAN RESIDUES; VAN DER WAALS INTERACTIONS; VETERINARY DRUGS;

AMINO ACIDS; BINDING ENERGY; DOCKING; ENZYMES; GROUNDWATER; MOLECULAR MODELING; ORGANIC POLLUTANTS; TOXICITY; VAN DER WAALS FORCES;

HYDROGEN BONDS;

ANTIBIOTIC AGENT; ENZYME; GROUND WATER; OXYTETRACYCLINE; TRYPSIN; VETERINARY DRUG;

ARTICLE; CIRCULAR DICHROISM; FLUORESCENCE SPECTROSCOPY; FOOD ANALYSIS; HYDROGEN BOND; MOLECULAR DOCKING; MOLECULAR INTERACTION; POLLUTANT; PRIORITY JOURNAL; SOIL POLLUTION; SPECTROMETER; THERMODYNAMICS; VETERINARY MEDICINE; WATER CONTAMINATION;

ANIMALS; BINDING SITES; CATTLE; CIRCULAR DICHROISM; DRUG INTERACTIONS; FLUORESCENCE; HYDROGEN BONDING; MODELS, MOLECULAR; MOLECULAR STRUCTURE; OXYTETRACYCLINE; PANCREAS; PROTEIN BINDING; PROTEIN CONFORMATION; THERMODYNAMICS; TRYPSIN; VETERINARY DRUGS;

ANIMALIA;

EID: 77956544845     PISSN: 15257797     EISSN: 15264602     Source Type: Journal    
DOI: 10.1021/bm100633h     Document Type: Article

References (42)

1. Wu, L. L.; Chen, L.; Song, C.; Liu, X. W.; Deng, H. P.; Gao, N. Y.; Gao, H. W. Amino Acids 2008, 38, 113
2. Albertsson, A. C.; Srivastava, R. K. Adv. Drug Delivery Rev. 2008, 60, 1077
3. Ghosh, S. Colloids Surf., B 2008, 66, 178
4. Hong, M. Z.; Yan, Q. W.; Qiu, H. Z. J. Lumin. 2010, 130, 781
5. Rigos, G.; Nengas, I.; Alexis, M.; Troisi, G. M. Aquat. Toxicol. 2004, 69, 281
6. Kong, W. D.; Zhu, Y. G.; Liang, Y. C.; Zhang, J.; Smith, F. A.; Yang, M. Environ. Pollut. 2007, 147, 187
7. Ye, Z.; Weinberg, H. S.; Meyer, M. T. Anal. Chem. 2007, 79, 1135
8. Boleas, S.; Alonso, C.; Pro, J.; Fernandez, C.; Carbonell, G.; Tarazona, J. V. J. Hazard. Mater. 2005, 122, 233
9. Ferreira, C. S.; Nunes, B. A.; Henriques-Almeida, J. M.; Guilhermino, L. Ecotoxicol. Environ. Saf. 2007, 67, 452
10. Jiao, S.; Zheng, S.; Yin, D.; Wang, L.; Chen, L. J. Environ. Sci. (Beijing, China) 2008, 20, 806
11. Li, K.; Yediler, A.; Yang, M.; Schulte-Hostede, S.; Wong, M. H. Chemosphere 2008, 72, 473
12. Lunden, T.; Miettinen, S.; Lonnstrom, L. G.; Lilius, E. M.; Bylund, G. Fish Shellfish Immunol. 1998, 8, 217
13. Qu, M. M.; Sun, L. W.; Chen, J.; Li, Y. Q.; Chen, Y. G.; Kong, Z. M. J. Agro-Environ. Sci. 2004, 23, 240
14. Li, Z. L.; Chen, H. G.; Xu, Y.; Kong, Z. M. J. Ecol. Rural Environ. 2006, 22, 84
15. Hobusch, D.; Putzke, H. P. Exp. Pathol. 1971, 5, 298
16. Lorenzo, C.; del Olmo Martinez, M. L.; Pastor, L.; Almaraz, A.; Belmonte, A.; Caro-Paton, A. Int. J. Pancreatol. 1999, 26, 181
17. Yang, J. T.; Wu, C. S.; Martinez, H. M. Methods Enzymol. 1986, 130, 208
18. Shyamali, S. S.; Lillian, D. R.; Lawrence, L.; Esther, B. Biochemistry 1979, 18, 1026
19. Qin, C.; Xie, M. X.; Liu, Y. Biomacromolecules 2007, 8, 2182
20. Bikadi, Z.; Hazai, E. J. Cheminf. 2009, 1, 15
21. Halgren, T. A. J. Comput. Chem. 1998, 17, 490
22. Stewart, J. J. P. MOPAC2009; Stewart Computational Chemistry: Colorado Springs, CO, 2009. http://openmopac.net/.
23. Morris, G. M.; Halliday, R. S.; Huey, R.; Hart, W. E.; Belew, R. K.; Olson, A. J.; Goodsell, D. S. J. Comput. Chem. 1998, 19, 1639
24. Solis, F. J.; Wets, R. J. B. Math. Oper. Res. 1981, 6, 19
25. Zhang, B.; Xing, Y. H.; Li, Z. W.; Zhou, H. Y.; Mu, Q. X.; Yan, B. Nano Lett. 2009, 9, 2280
26. Yang, Q.; Liang, J.; Han, H. J. Phys. Chem. B 2009, 113, 10454
27. Zhao, X. C.; Liu, R. T.; Chi, Z. X.; Teng, Y.; Qin, P. F. J. Phys. Chem. B 2010, 114, 5625
28. Wu, T.; Wu, Q.; Guan, S.; Su, H.; Cai, Z. Biomacromolecules 2007, 8, 1899
29. Wang, Y. Q.; Zhang, H. M.; Zhang, G. C.; Liu, S. X.; Zhou, Q. H.; Fei, Z. H.; Liu, Z. T. Int. J. Biol. Macromol. 2007, 41, 243
30. Hu, Y. J.; Liu, Y.; Pi, Z. B.; Qu, S. S. Bioorg. Med. Chem. 2005, 13, 6609
31. Manavalan, P.; Johnson, W. C. J. Nature 1983, 305, 831
32. Huang, B. X.; Kim, H. Y.; Dass, C. J. Am. Soc. Mass Spectrom. 2004, 15, 1237
33. Hu, Y. J.; Liu, Y.; Xiao, X. H. Biomacromolecules 2009, 10, 517
34. Yuan, T.; Weljie, A. M.; Vogel, H. J. Biochemistry 1998, 37, 3187
35. Zhang, Y. Z.; Zhou, B.; Zhang, X. P.; Huang, P.; Li, C. H.; Liu, Y. J. Hazard. Mater. 2009, 163, 1345
36. Tang, J.; Luan, F.; Chen, X. Bioorg. Med. Chem. 2006, 14, 3210
37. Ross, P. D.; Subramanian, S. Biochemistry 1981, 20, 3096
38. Förster, T. Modern Quantum Chemistry; Academic Press: New York, 1965.
39. Huang, Y. B.; Liu, B. Z.; Yu, Z.; Zi, Y. Q. J. Lumin. 2010, 130, 360
40. Graf, L.; Jancso, A.; Szilagyi, L.; Hegyi, G.; Pinter, K.; Naray-Szabo, G.; Hepp, J.; Medzihradszky, K.; Rutter, W. J. Proc. Natl. Acad. Sci. U.S.A. 1988, 85, 4961
41. Ma, W.; Tang, C.; Lai, L. Biophys. J. 2005, 89, 1183
42. Nilsson, M. T.; Krajewski, W. W.; Yellagunda, S.; Prabhumurthy, S.; Chamarahally, G. N.; Siddamadappa, C.; Srinivasa, B. R.; Yahiaoui, S.; Larhed, M.; Karlen, A.; Jones, T. A.; Mowbray, S. L. J. Mol. Biol. 2009, 393, 504