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Volumn 21, Issue 8, 2010, Pages 1417-1422

QTIPS: A novel method of unsupervised determination of isotopic amino acid distribution in SILAC experiments

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CELL CULTURE; ISOTOPES; MASS SPECTROMETRY; PEPTIDES; SPECTROMETRY;

EID: 77956520127     PISSN: 10440305     EISSN: 18791123     Source Type: Journal    
DOI: 10.1016/j.jasms.2010.04.002     Document Type: Article
Times cited : (12)

References (20)
  • 1
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture SILAC as a simple and accurate approach to expression proteomics
    • Ong, S. E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M. Stable Isotope Labeling by Amino Acids in Cell Culture SILAC as a Simple and Accurate Approach to Expression Proteomics. Mol. Cell. Proteom. 2002, 1, 376-386.
    • (2002) Mol. Cell. Proteom. , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 2
    • 63049110388 scopus 로고    scopus 로고
    • Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions
    • Pan, C.; Kumar, C.; Bohl, S.; Klingmueller, U.; Mann, M. Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-Specific Functions. Mol. Cell. Proteom. 2009, 8, 443-450.
    • (2009) Mol. Cell. Proteom. , vol.8 , pp. 443-450
    • Pan, C.1    Kumar, C.2    Bohl, S.3    Klingmueller, U.4    Mann, M.5
  • 3
    • 33845329203 scopus 로고    scopus 로고
    • Functional and quantitative proteomics using SILAC
    • Mann, M. Functional and Quantitative Proteomics Using SILAC. Nat. Rev. Mol. Cell Biol. 2006, 7, 952-958.
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 952-958
    • Mann, M.1
  • 5
    • 0012351964 scopus 로고    scopus 로고
    • Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC)
    • Ong, S. E.; Kratchmarova, I.; Mann, M. Properties of 13C-Substituted Arginine in Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC). J. Proteome Res. 2003, 2, 173-181.
    • (2003) J. Proteome Res. , vol.2 , pp. 173-181
    • Ong, S.E.1    Kratchmarova, I.2    Mann, M.3
  • 6
    • 36849077163 scopus 로고    scopus 로고
    • Rapid determination of amino acid incorporation by stable isotope labeling with amino acids in cell culture (SILAC)
    • Schmidt, F.; Strozynski, M.; Salus, S. S.; Nilsen, H.; Thiede, B. Rapid Determination of Amino Acid Incorporation by Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC). Rapid Commun. Mass Spectrom. 2007, 21, 3919-3926.
    • (2007) Rapid Commun. Mass Spectrom. , vol.21 , pp. 3919-3926
    • Schmidt, F.1    Strozynski, M.2    Salus, S.S.3    Nilsen, H.4    Thiede, B.5
  • 7
    • 34548356772 scopus 로고    scopus 로고
    • An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics
    • Van Hoof, D.; Pinkse, M. W.; Oostwaard, D. W.; Mummery, C. L.; Heck, A. J.; Krijgsveld, J. An Experimental Correction for Arginine-to-Proline Conversion Artifacts in SILAC-Based Quantitative Proteomics. Nat. Methods 2007, 4, 677-678.
    • (2007) Nat. Methods , vol.4 , pp. 677-678
    • Van Hoof, D.1    Pinkse, M.W.2    Oostwaard, D.W.3    Mummery, C.L.4    Heck, A.J.5    Krijgsveld, J.6
  • 9
    • 34247396011 scopus 로고    scopus 로고
    • A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
    • Ong, S. E.; Mann, M. A Practical Recipe for Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC). Nat. Prot. 2006, 1, 2650-2660.
    • (2006) Nat. Prot. , vol.1 , pp. 2650-2660
    • Ong, S.E.1    Mann, M.2
  • 10
    • 34250372908 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture for quantitative proteomics
    • Ong, S. E.; Mann, M. Stable Isotope Labeling by Amino Acids in Cell Culture for Quantitative Proteomics. Methods Mol. Biol. 2007, 359, 37-52.
    • (2007) Methods Mol. Biol. , vol.359 , pp. 37-52
    • Ong, S.E.1    Mann, M.2
  • 14
    • 3142702204 scopus 로고    scopus 로고
    • TANDEM: Matching proteins with tandem mass spectra
    • Craig, R.; Beavis, R. C. TANDEM: Matching Proteins with Tandem Mass Spectra. Bioinformatics 2004, 20, 1466-1467.
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 15
    • 33750979860 scopus 로고    scopus 로고
    • General framework for developing and evaluating database scoring algorithms using the TANDEM search engine
    • MacLean, B.; Eng, J. K.; Beavis, R. C.; McIntosh, M. General Framework for Developing and Evaluating Database Scoring Algorithms Using the TANDEM Search Engine. Bioinformatics 2006, 22, 2830-2832.
    • (2006) Bioinformatics , vol.22 , pp. 2830-2832
    • MacLean, B.1    Eng, J.K.2    Beavis, R.C.3    McIntosh, M.4
  • 16
    • 76149132007 scopus 로고    scopus 로고
    • Comparison of database search strategies for high precursor mass accuracy MS/MS data
    • Hsieh, E. J.; Hoopmann, M. R.; MacLean, B.; MacCoss, M. J. Comparison of Database Search Strategies for High Precursor Mass Accuracy MS/MS Data. J. Protein Res. 2010, 9, 1138-1143.
    • (2010) J. Protein Res. , vol.9 , pp. 1138-1143
    • Hsieh, E.J.1    Hoopmann, M.R.2    MacLean, B.3    MacCoss, M.J.4
  • 17
    • 33746930864 scopus 로고    scopus 로고
    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats
    • Keller, A.; Eng, J.; Zhang, N.; Li, X. J.; Aebersold, R. A Uniform Proteomics MS/MS Analysis Platform Utilizing Open XML File Formats. Mol. Sys. Biol. 2005, 1, 2005-0017.
    • (2005) Mol. Sys. Biol. , vol.1 , pp. 2005-0017
    • Keller, A.1    Eng, J.2    Zhang, N.3    Li, X.J.4    Aebersold, R.5
  • 18
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Empirical Statistical Model to Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search. Anal. Chem. 2002, 74, 5383-5392.
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 19
    • 0344737959 scopus 로고    scopus 로고
    • Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry
    • Li, X. J.; Zhang, H.; Ranish, J. A.; Aebersold, R. Automated Statistical Analysis of Protein Abundance Ratios from Data Generated by Stable-Isotope Dilution and Tandem Mass Spectrometry. Anal. Chem. 2003, 75, 6648-6657.
    • (2003) Anal. Chem. , vol.75 , pp. 6648-6657
    • Li, X.J.1    Zhang, H.2    Ranish, J.A.3    Aebersold, R.4
  • 20
    • 0034789979 scopus 로고    scopus 로고
    • Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
    • Han, D. K.; Eng, J.; Zhou, H.; Aebersold, R. Quantitative Profiling of Differentiation-Induced Microsomal Proteins Using Isotope-Coded Affinity Tags and Mass Spectrometry. Nat. Biotechnol. 2001, 19, 946-951.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 946-951
    • Han, D.K.1    Eng, J.2    Zhou, H.3    Aebersold, R.4


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