Inclusion of weak high-resolution X-ray data for improvement of a group II intron structure

Acta Crystallographica Section D: Biological Crystallography

Volumn 66, Issue 9, 2010, Pages 988-1000

  Wang, Jimin ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

group II intron; weak high resolution data

Indexed keywords

BACTERIAL DNA; RIBOZYME;

ARTICLE; BACILLACEAE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; GENETICS; INTRON; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; X RAY CRYSTALLOGRAPHY; PROCEDURES;

BACILLACEAE; BASE SEQUENCE; CRYSTALLOGRAPHY, X-RAY; DNA, BACTERIAL; INTRONS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA, CATALYTIC;

EID: 77956495754     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444910029938     Document Type: Article

References (31)

1. Adams, P. L., Stahley, M. R., Kosek, A. B., Wang, J. & Strobel, S. A. (2004). Nature (London), 430, 45-50.
2. Boudvillain, M. & Pyle, A. M. (1998). EMBO J. 17, 7091-7104.
3. Brünger, A. T. (1993). X-PLOR Manual Version 3.1. Yale University Press, New Haven, USA.
4. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. &Warren, G. L. (1998). Acta Cryst. D54, 905-921.
5. Ceck, T. R. (1986). Cell, 44, 207-210.
6. Chanfreau, G. & Jacquier, A. (1994). Science, 266, 1383-1387.
7. Chu, V. T., Adamidi, C., Lie, Q., Perlman, P. S. & Pyle, A. M. (2001). EMBO J. 20, 6866-6876.
8. Cura, V., Khrishnaswamy, S. & Podjarny, A. D. (1992). Acta Cryst. A48, 756-764.
9. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
10. Eriani, G., Delarue, M., Poch, O., Gangloff, J. & Moras, D. (1990). Nature (London), 347, 203-206.
11. Gordon, P. M., Fong, R. & Piccirilli, J. A. (2007). Chem. Biol. 14, 607-612.
12. Gordon, P. M. & Piccirilli, J. A. (2001). Nature Struct. Biol. 8, 893-898.
13. Gordon, P. M., Sontheimer, E. J. & Piccirilli, J. A. (2000). Biochemistry, 39, 12939-12952.
14. Jacquier, A. & Michel, F. (1990). J. Mol. Biol. 213, 437-447.
15. Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M. (1991). Acta Cryst. A47, 110-119.
16. Klein, D. J., Moore, P. B. & Steitz, T. A. (2004). RNA, 10, 1366-1379.
17. Lambowitz, A. M. & Zimmerly, S. (2004). Annu. Rev. Genet. 38, 1-35.
18. Moore, M. J. & Sharp, P. A. (1993). Nature (London), 365, 364-368.
19. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
20. Otwinowski, Z. (1991). Proceedings of the CCP4 Study Weekend. Data Collection and Processing, edited by W. Wolf, P. R. Evans & A. G. W. Leslie, pp. 80-86. Warrington: Daresbury Laboratory.
21. Otwinowski, Z. & Minor,W. (1997). Methods Enzymol. 276, 307-326.
22. Pyle, A. M. & Lambowitz, A. M. (2006). In The RNA World, 3rd ed., edited by R. F. Gesteland, T. R. Cech & J. F. Atkins. New York: Cold Spring Harbor Laboratory Press.
23. Rich, A. (2003). Nature Struct. Biol. 10, 247-249.
24. Rould, M. A., Perona, J. J. & Steitz, T. A. (1992). Acta Cryst. A48, 751-756.
25. Sharp, P. A. (1994). Cell, 77, 805-815.
26. Steitz, T. A. & Steitz, J. A. (1993). Proc. Natl Acad. Sci. USA, 90, 6498-6502.
27. Toor, N., Keating, K. S., Fedorova, O., Rajashankar, K., Wang, J. & Pyle, A. M. (2010). RNA, 16, 57-69.
28. Toor, N., Keating, K. S., Taylor, S. D. & Pyle, A. M. (2008). Science, 320, 77-82.
29. Toor, N., Rajashankar, K., Keating, K. S. & Pyle, A. M. (2008). Nature Struct. Mol. Biol. 15, 1221-1222.
30. Wang, J. & Boisvert, D. C. (2003). J. Mol. Biol. 327, 843-855.
31. Wang, J., Kamtekar, S., Berman, A. J. & Steitz, T. A. (2005). Acta Cryst. D61, 67-74.