Phototaxis of Haloarcula marismortui revealed through a novel microbial motion analysis algorithm

Photochemistry and Photobiology

Volumn 86, Issue 5, 2010, Pages 1084-1090

  Lin, Yu Cheng ^a   Fu, Hsu Yuan ^a   Yang, Chii Shen ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; HALOARCULA MARISMORTUI; MICROBIOLOGICAL PHENOMENA AND FUNCTIONS; MOVEMENT (PHYSIOLOGY); PHOTOSTIMULATION; PHYSIOLOGY;

ALGORITHMS; HALOARCULA MARISMORTUI; MICROBIOLOGICAL PHENOMENA; MOVEMENT; PHOTIC STIMULATION;

ARCHAEA; HALOARCULA MARISMORTUI; HALOBACTERIUM SALINARUM;

EID: 77956458396     PISSN: 00318655     EISSN: 17511097     Source Type: Journal    
DOI: 10.1111/j.1751-1097.2010.00768.x     Document Type: Article

References (24)

1. Oesterhelt, D. W. Stoeckenius (1973) Functions of a new photoreceptor membrane. Proc. Natl Acad. Sci. USA 70, 2853 2857.
2. Lanyi, J. K. H. Luecke (2001) Bacteriorhodopsin. Curr. Opin. Struct. Biol. 11, 415 419.
3. Bogomolni, R. A. J. L. Spudich (1982) Identification of a third rhodopsin-like pigment in phototactic Halobacterium halobium. Proc. Natl Acad. Sci. USA 79, 6250 6254.
4. Takahashi, T., Y. Mochizuki, N. Kamo Y. Kobatake (1985) Evidence that the long-lifetime photointermediate of s-rhodopsin is a receptor for negative phototaxis in Halobacterium halobium. Biochem. Biophys. Res. Commun. 127, 99 105.
5. Spudich, J. L. (2006) The multitalented microbial sensory rhodopsins. Trends Microbiol. 14, 480 487.
6. Oren, A., M. Ginzburg, B. Z. Ginzburg, L. I. Hochstein B. E. Volcani (1990) Haloarcula marismortui (Volcani) sp. nov., nom. rev., an extremely halophilic bacterium from the Dead Sea. Int. J. Syst. Bacteriol. 40, 209 210.
7. Pyatibratov, M. G., S. N. Beznosov, R. Rachel, E. I. Tiktopulo, A. K. Surin, A. S. Syutkin O. V. Fedorov (2008) Alternative flagellar filament types in the haloarchaeon Haloarcula marismortui. Can. J. Microbiol. 54, 835 844.
8. Baliga, N. S., R. Bonneau, M. T. Facciotti, M. Pan, G. Glusman, E. W. Deutsch, P. Shannon, Y. Chiu, R. S. Weng, R. R. Gan, P. Hung, S. V. Date, E. Marcotte, L. Hood W. V. Ng (2004) Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea. Genome Res. 14, 2221 2234.
9. Ng, W. V., S. P. Kennedy, G. G. Mahairas, B. Berquist, M. Pan, H. D. Shukla, S. R. Lasky, N. S. Baliga, V. Thorsson, J. Sbrogna, S. Swartzell, D. Weir, J. Hall, T. A. Dahl, R. Welti, Y. A. Goo, B. Leithauser, K. Keller, R. Cruz, M. J. Danson, D. W. Hough, D. G. Maddocks, P. E. Jablonski, M. P. Krebs, C. M. Angevine, H. Dale, T. A. Isenbarger, R. F. Peck, M. Pohlschroder, J. L. Spudich, K. W. Jung, M. Alam, T. Freitas, S. Hou, C. J. Daniels, P. P. Dennis, A. D. Omer, H. Ebhardt, T. M. Lowe, P. Liang, M. Riley, L. Hood S. DasSarma (2000) Genome sequence of Halobacterium species NRC-1. Proc. Natl Acad. Sci. USA 97, 12176 12181.
10. Sundberg, S. A., M. Alam J. L. Spudich (1986) Excitation signal processing times in Halobacterium halobium phototaxis. Biophys. J. 50, 895 900.
11. Sager, B. M., J. J. Sekelsky, P. Matsumura J. Adler (1988) Use of a computer to assay motility in bacteria. Anal. Biochem. 173, 271 277.
12. Amsler, C. D. (1996) Use of computer-assisted motion analysis for quantitative measurements of swimming behavior in peritrichously flagellated bacteria. Anal. Biochem. 235, 20 25.
13. Alon, U., L. Camarena, M. G. Surette, B. Aguera y Arcas, Y. Liu, S. Leibler J. B. Stock (1998) Response regulator output in bacterial chemotaxis. EMBO J. 17, 4238 4248.
14. Robb, F. T. (1995) Archaea: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Plainview, NY.
15. Sbalzarini, I. F. P. Koumoutsakos (2005) Feature point tracking and trajectory analysis for video imaging in cell biology. J. Struct. Biol. 151, 182 195.
16. Berg, H. C. (1993) Random Walks in Biology. Princeton University Press, Princeton, NJ.
17. Allen, L. J. S. (2003) An Introduction to Stochastic Processes with Applications to Biology. Pearson/Prentice Hall, Upper Saddle River, NJ.
18. Rice, S. O. (1944) Mathematical analysis of random noise. Bell Syst. Tech. J. 23, 282 332.
19. Karlsen, O. T., R. Verhagen W. M. Bovee (1999) Parameter estimation from Rician-distributed data sets using a maximum likelihood estimator: Application to T1 and perfusion measurements. Magn. Reson. Med. 41, 614 623.
20. Streif, S., W. F. Staudinger, D. Oesterhelt W. Marwan (2009) Quantitative analysis of signal transduction in motile and phototactic cells by computerized light stimulation and model based tracking. Rev. Sci. Instrum. 80, 023709.
21. Polin, M., I. Tuval, K. Drescher, J. P. Gollub R. E. Goldstein (2009) Chlamydomonas swims with two "gears" in a eukaryotic version of run-and-tumble locomotion. Science 325, 487 490.
22. Mitchell, J. G. K. Kogure (2006) Bacterial motility: Links to the environment and a driving force for microbial physics. FEMS Microbiol. Ecol. 55, 3 16.
23. Perazzona, B. J. L. Spudich (1999) Identification of methylation sites and effects of phototaxis stimuli on transducer methylation in Halobacterium salinarum. J. Bacteriol. 181, 5676 5683.
24. Barabasi, A. L. (2009) Scale-free networks: A decade and beyond. Science 325, 412 413.