Induction of defense gene homologues in wheat roots during interactions with Pseudomonas fluorescens

Biological Control

Volumn 55, Issue 2, 2010, Pages 118-125

  Okubara, Patricia A ^a   Call, Douglas R ^b   Kwak, Youn sig ^a   Skinner, Daniel Z ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

Jasmonate signaling; Microarray; Oxidative stress; Rhizobacteria; Root transcriptome

Indexed keywords

ALEXA; ARABIDOPSIS; BACTERIA (MICROORGANISMS); HORDEUM; LYCOPERSICON ESCULENTUM; PSEUDOMONAS FLUORESCENS; RHIZOBIALES; TRITICUM AESTIVUM;

EID: 77956419390     PISSN: 10499644     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biocontrol.2010.07.009     Document Type: Article

References (57)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein search programs. Nucleic Acids Research 1997, 25:3389-3402.
2. Audenaert K., Pattery T., Cornelis P., Höfte M. Induction of systemic resistance to Botrytis cinerea in tomato by Pseudomonas aeruginosa 7NSK2: role of salicylic acid, pyochelin, and pyocyanin. Molecular Plant-Microbe Interactions 2002, 15:1147-1156.
3. Belles-Boix E., Babiychuk E., Van Montagu M., Inzé D., Kushnir S. CEO1, a new protein from Arabidopsis thaliana, protects yeast against oxidative damage. FEBS Letters 2000, 482:19-24.
4. Brazma A., Hingamp P., Quackenbush J., Sherlock G., Spellman P., Stoeckert C., Aach J., Ansorge W., Ball C.A., Causton H.C., Gaasterland T., Glenisson P., Holstege F.C.P., Kim I.F., Markowitz V., Matese J.C., Parkinson H., Robinson A., Sarkans U., Schulze-Kremer S., Stewart J., Taylor R., Vilo J., Vingron M. Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nature Genetics 2001, 29:365-371.
5. Cartieux F., Thibaud M.-C., Zimmerli L., Lessard P., Sarrobert C., David P., Gerbaud A., Robaglia C., Somerville S., Nussaume L. Transcriptome analysis of Arabidopsis colonized by a plant-growth promoting rhizobacterium reveals a general effect on disease resistance. Plant Journal 2003, 36:177-188.
6. Chao S., Lazo G.R., You F., Crossman C.C., Hummel D.D., Lui N., Laudencia-Chingcuanco D., Anderson J.A., Close T.J., Dubcovsky J., Gill B.S., Gill K.S., Gustafson J.P., Kinian S.F., Laptian N.L.V., Nguyen H.T., Sorrells M.E., McGuire P.E., Qualset C.O., Anderson O.A. Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.). Genome 2006, 49:531-544.
7. Chen C., Bélanger R.R., Benhamou N., Paulitz T.C. Defense enzymes induced in cucumber roots by treatment with plant growth-promoting rhizobacteria (PGPR) and Pythium aphanidermatum. Physiological and Molecular Plant Pathology 2000, 56:13-23.
8. De Vos M., Van Oosten V.R., Van Poecke R.M., Van Pelt J.A., Pozo M.J., Mueller M.J., Buchala A.J., Métraux J.-P., Van Loon L.C., Dicke M., Pieterse C.M.J. Signal signature and transcriptome changes of Arabidopsis during pathogen and insect attack. Molecular Plant-Microbe Interactions 2005, 18:923-937.
9. Desikan R., Mackerness S.A.-H., Hancock J.T., Neill S.J. Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiology 2001, 127:159-172.
10. Fritsch E.F., Sambrook J., Maniatis T. Molecular Cloning, A Laboratory Manual 1989, Cold Spring Harbor Laboratory Press, NY. Second ed.
11. Glazebrook J., Chen W., Estes B., Chang H.-S., Nawarth C., Métraux J.-P., Zhu T., Katagiri F. Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping. Plant Journal 2003, 34:217-228.
12. Guo M., Tian F., Wamboldt Y., Alfano J.R. The majority of the type III effector inventory of Pseudomonas syringae pv. tomato DC3000 can suppress plant immunity. Molecular Plant-Microbe Interactions 2009, 22:1069-1088.
13. Guo W., Ward R.W., Thomashow M.F. Characterization of a cold-regulated wheat gene related to Arabidopsis cor47. Plant Physiology 1992, 100:915-922.
14. Haas D., Keel C. Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease. Annual Review of Phytopathology 2003, 41:117-153.
15. Hershey H.P., Stoner T.D. Isolation and characterization of cDNA clones for RNA species induced by substituted benzenesulfonamides in corn. Plant Molecular Biology 1991, 17:579-690.
16. Huang G., Lu H., Hao A., Ng D.C.H., Ponniah S., Guo K., Lufei C., Zeng Q., Cao X. GRIM-19, a cell death regulatory protein, is essential for assembly and function of mitochondrial complex I. Molecular and Cellular Biology 2004, 24:8447-8456.
17. Iavicoli A., Boutet E., Buchala A., Métraux J.-P. Induced systemic resistance in Arabidopsis thaliana in response to root inoculation with Pseudomonas fluorescens CHA0. Molecular Plant-Microbe Interactions 2003, 16:851-858.
18. Jan Klok E., Wilson I.W., Wilson D., Chapman S.C., Ewing R.M., Somerville S.C., Peacock W.J., Dolferus R., Dennis E.S. Expression profile analysis of the low-oxygen response in Arabidopsis root cultures. Plant Cell 2002, 14:2481-2494.
19. Kreps J.A., Wu Y., Chang H.-S., Zhu T., Wang X., Harper J.F. Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiology 2002, 130:2129-2141.
20. Landa B.B., Mavrodi O.V., Raaijmakers J.M., McSpadden Gardener B.B., Thomashow L.S., Weller D.M. Differential ability of genotypes of 2, 4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains to colonize the roots of pea plants. Applied and Environmental Microbiology 2002, 68:3226-3237.
21. Landa B.B., Mavrodi D.M., Thomashow L.S., Weller D.M. Interactions between strains of 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens in the rhizosphere of wheat. Phytopathology 2003, 93:982-994.
22. Lazo G.R., Chao S., Hummel D.D., et al. Development of an expressed sequence tage (EST) resource for wheat (Triticum aestivum L.): EST generation, unigene analysis, probe selection and bioinformatics for 16,000-locus bin-delineated map. Genetics 2004, 168:585-593.
23. -ΔΔCT method. Methods 2001, 25:402-408.
24. Ludwig A.A., Romaeis T., Jones J.D.G. CDPK-mediated signalling pathways: specificity and cross-talk. Journal of Experimental Botany 2004, 55:181-188.
25. Maurhofer M., Hase C., Meuwly P., Métraux J.-P., Défago G. Induction of systemic resistance of tobacco to tobacco necrosis virus by the root-colonizing Pseudomonas fluorescens strain CHA0: influence of the gacA gene and pyoverdine production. Phytopathology 1994, 84:139-146.
26. Maurhofer M., Reimmann C., Schmidli-Sacherer P., Heeb S., Haas D., Défago G. Salicylic acid biosynthetic genes expressed in Pseudomonas fluorescens strain P3 improve the induction of systemic resistance in tobacco against tobacco necrosis virus. Phytopathology 1998, 88:678-684.
27. Miché L., Battistoni F., Gemmer S., Belghazi M., Reinhold-Hurek B. Upregulation of jasmonate-inducible defense proteins and differential colonization of roots of Oryza sativa cultivars with the endophyte Azocarus sp. Molecular Plant-Microbe Interactions 2006, 19:502-511.
28. Mukherjee S., Vaishnava S., Hooper L.V. Multi-layered regulation of intestinal antimicrobial defense. Cellular and Molecular Life Science 2008, 65:3019-3027.
29. Mylona P., Moerman M., Yang W.-C., Gloudemans T., Van De Kerckhove J., van Kammen A., Bisseling T., Franssen H.J. The root epidermis-specific pea gene RH2 is homologous to a pathogenesis-related gene. Plant Molecular Biology 1994, 26:39-50.
30. Navrot N., Rouhier N., Gelhaye E., Jacquot J.-P. Reactive oxygen species generation and antioxidant systems in plant mitochondria. Physiologia Plantarum 2007, 129:185-195.
31. Okubara P.A., Kornoely J.P., Landa B.B. Rhizosphere colonization of hexaploid wheat by Pseudomonas fluorescens strains Q8r1-96 and Q2-87 is cultivar-variable and associated with changes in gross root morphology. Biological Control 2004, 30:392-403.
32. Okubara P.A., Bonsall R.F. Accumulation of Pseudomonas-derived 2,4-diacetylphloroglucinol on wheat seedling roots is influenced by host cultivar. Biological Control 2008, 46:322-331.
33. Okubara P.A., Schroeder K.L., Paulitz T.C. Identification and quantification of Rhizoctonia solani and R. oryzae using real-time polymerase chain reaction. Phytopathology 2008, 98:837-847.
34. Park K.S., Kloepper J.W. Activation of PR-1a promoter by rhizobacteria that induce systemic resistance in tobacco against Pseudomonas syringae pv. tabaci. Biological Control 2000, 18:2-9.
35. Pieterse C.M.J., Van Loon L.C. Salicylic acid-independent plant defence pathways. Trends in Plant Science 1999, 4:52-58.
36. Pieterse C.J.M., van Pelt J.A., Ton J., Parchmann S., Mueller M.J., Buchala A., Métraux J.-P., Van Loon L.C. Rhizobacteria-mediated induced systemic resistance (ISR) in Arabidopsis requires sensitivity to jasmonate and ethylene but is not accompanied by an increase in their production. Physiological and Molecular Plant Pathology 2000, 57:123-134.
37. Quan L.-J., Zhang B., Shi W.-W., Li H.-Y. Hydrogen peroxide in plants: a versatile molecule of the reactive oxygen species network. Journal of Integrative Plant Biology 2008, 50:2-18.
38. Raaijmakers J.M., Weller D.M. Natural plant protection by 2,4-diacetylphloroglucinol-producing Pseudomonas spp. in take-all decline soils. Molecular Plant-Microbe Interactions 1998, 11:144-152.
39. Raaijmakers J.M., Weller D.M. Exploiting genotypic diversity of 2,4-diacetylphloroglucinol-producing Pseudomonas spp.: characterization of superior root-colonizing P. fluorescens strain Q8r1-96. Applied and Environmental Microbiology 2001, 67:2545-2554.
40. Rhee S.Y., Beavis W., Berardini T.Z., Chen G., Dixon D., Doyle A., Garcia-Hernandez M., Huala E., Lander G., Montoya M., Miller N., Mueller L.A., Mundodi S., Reiser L., Tacklind J., Weems D.C., Wu Y., Xu I., Yoo D., Yoon J., Zhang P. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Research 2003, 31:224-228.
41. Rostoks N., Schmierer D., Kudrna D., Kleinhofs A. Barley putative hypersensitive induced reaction genes: genetic mapping, sequence analyses and differential expression in disease lesion mimic mutants. Theoretical and Applied Genetics 2003, 107:1094-1111.
42. Schenk P.M., Kazan K., Manners J.M., Anderson J.P., Simpson R.S., Wilson I.W., Somerville S.C., Maclean D.J. Systemic gene expression in Arabidopsis during an incompatible interaction with Alternaria brassicicola. Plant Physiology 2003, 132:999-1010.
43. Skinner D.Z., Okubara P.A., Baek K.-H., Call D.R. Long oligonucleotide microarrays in wheat: development and use of a novel and non-proprietary computer script. Functional and Integrative Genomics 2005, 5:70-79.
44. Storlie E.W., Allan R.E., Walker-Simmons M.K. Effect of the Vrn1-Fr1 interval on cold hardiness levels in near-isogenic wheat lines. Crop Science 1998, 38:483-488.
45. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22:4673-4680.
46. Ton J., Van Pelt J.A., Van Loon L.C., Pieterse C.J.M. Differential effectiveness of salicylate-dependent and jasmonate/ethylene-dependent induced resistance in Arabidopsis. Molecular Plant-Microbe Interactions 2002, 15:27-34.
47. Tusher V.G., Tibshirani R., Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proceedings of the National Academy of Sciences USA 2001, 98:5116-5121.
48. Van Wees S.C.M., Chang H.-S., Zhu T., Glazebrook J. Characterization of the early response of Arabidopsis to Alternaria brassicicola infection using expression profiling. Plant Physiology 2003, 132:606-617.
49. Verhagen B.W.M., Glazebrook J., Zhu T., Chang H.-S., van Loon L.C., Pieterse C.M.J. The transcriptome of rhizobacteria-induced systemic resistance in Arabidopsis. Molecular Plant-Microbe Interactions 2004, 17:895-908.
50. Vijayan P., Shockey J., Lévesques C.A., Cook J.R., Browse J. A role for jasmonate in pathogen defense of Arabidopsis. Proceedings of the National Academy of Sciences USA 1998, 95:7209-7214.
51. 2+-dependent protein kinases (CDPKs) genes under different environmental stresses. FEBS Letters 2007, 581:1179-1189.
52. Wang K.L.-C., Li H., Ecker J.R. Ethylene biosynthesis and signaling networks. Plant Cell 2002, 14:S131-S151.
53. Wang Y., Ohara Y., Nakayashiki H., Tosa Y., Mayama S. Microarray analysis of the gene expression profile induced by the endophytic plant growth-promoting rhizobacteria, Pseudomonas fluorescens FPT9601-T5 in Arabidopsis. Molecular Plant-Microbe Interactions 2005, 18:385-396.
54. Weller D.M., Raaijmakers J.M., McSpadden Gardener B.B., Thomashow L.S. Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annual Review of Phytopathology 2002, 40:309-348.
55. Xu Y., Chang P., Liu D., Narasimhan M.L., Raghothama K.G., Hasegawa P.M., Bressan R.A. Plant defense genes are synergistically induced by ethylene and methyl jasmonate. Plant Cell 1994, 6:1077-1085.
56. Xu R., Song F., Zheng Z. OsBISAMT1, a gene encoding S-adenosyl-l-methionine:salicyclic acid carboxyl methyltransferase, is differentially expressed in rice defense responses. Molecular Biology Reports 2006, 33:223-231.
57. Zar J.H. Biostatistical Analysis 1984, Prentice-Hall, New Jersey. 2nd ed.