-
1
-
-
33645775498
-
Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon
-
10.1371/journal.pgen.0020036. 16552445
-
Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon. Rangwala SH Elumalai R, Vanier C Ozkan H, Galbraith DW Richards EJ, PLoS Genet 2006 2 36 10.1371/journal.pgen.0020036 16552445
-
(2006)
PLoS Genet
, vol.2
, pp. 536
-
-
Rangwala, S.H.1
Elumalai, R.2
Vanier, C.3
Ozkan, H.4
Galbraith, D.W.5
Richards, E.J.6
-
2
-
-
0036591885
-
SINEs and LINEs: The art of biting the hand that feeds you
-
10.1016/S0955-0674(02)00338-1. 12067657
-
SINEs and LINEs: the art of biting the hand that feeds you. Weiner AM, Curr Opin Cell Biol 2002 14 343 350 10.1016/S0955-0674(02)00338-1 12067657
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 343-350
-
-
Weiner, A.M.1
-
3
-
-
0038079842
-
The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3
-
10.1046/j.1365-313X.2003.01767.x. 12795701
-
The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Santi L Wang Y Stile MR Berendzen K, Wanke D Roig C, Pozzi C Müller K, Müller J Rohde W, Salamini F, Plant J 2003 34 813 826 10.1046/j.1365-313X.2003.01767.x 12795701
-
(2003)
Plant J
, vol.34
, pp. 813-826
-
-
Santi, L.1
Wang, Y.2
Stile, M.R.3
Berendzen, K.4
Wanke, D.5
Roig, C.6
Pozzi, C.7
Müller, K.8
Müller, J.9
Rohde, W.10
Salamini, F.11
-
4
-
-
0037008211
-
Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA
-
10.1104/pp.002618. 12177492
-
Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA. Sangwan I O'Brian MR, Plant Physiol 2002 129 1788 1794 10.1104/pp.002618 12177492
-
(2002)
Plant Physiol
, vol.129
, pp. 1788-1794
-
-
Sangwan, I.1
O'brian, M.R.2
-
5
-
-
0029257543
-
Chromatin. Ga-ga over GAGA factor
-
10.1016/S0960-9822(95)00048-0. 7780729
-
Chromatin. Ga-ga over GAGA factor. Granok H Leibovitch BA, Shaffer CD Elgin SC, Curr Biol 1995 5 238 241 10.1016/S0960-9822(95)00048-0 7780729
-
(1995)
Curr Biol
, vol.5
, pp. 238-241
-
-
Granok, H.1
Leibovitch, B.A.2
Shaffer, C.D.3
Elgin, S.C.4
-
6
-
-
34548564136
-
Differential epigenetics regulation within an Arabidopsis retroposon family
-
10.1534/genetics.107.071092. 17339215
-
Differential epigenetics regulation within an Arabidopsis retroposon family. Rangwala SH Richards EJ, Genetics 2007 176 151 160 10.1534/genetics.107. 071092 17339215
-
(2007)
Genetics
, vol.176
, pp. 151-160
-
-
Rangwala, S.H.1
Richards, E.J.2
-
7
-
-
23844456247
-
Penelope-like elements - A new class of retroelements: Distribution, function and possible evolutionary significance
-
10.1159/000084984. 16093704
-
Penelope-like elements - a new class of retroelements: distribution, function and possible evolutionary significance. Evgen'ev MB Arkhipova IR, Cytogenet Genome Res 2005 110 510 521 10.1159/000084984 16093704
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 510-521
-
-
Evgen'ev, M.B.1
Arkhipova, I.R.2
-
9
-
-
38549144806
-
The Arabidopsis Information Resource (TAIR): Gene structure and function annotation
-
10.1093/nar/gkm965. 17986450
-
The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Swarbreck D Wilks C, Lamesch P Berardini TZ, Garcia-Hernandez M Foerster H, Li D Meyer T, Muller R Ploetz L, Radenbaugh A Singh S, Swing V Tissier C, Zhang P Huala E, Nucleic Acids Res 2008 36 1009 1014 10.1093/nar/gkm965 17986450
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1009-1014
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.Z.4
Garcia-Hernandez, M.5
Foerster, H.6
Li, D.7
Meyer, T.8
Muller, R.9
Ploetz, L.10
Radenbaugh, A.11
Singh, S.12
Swing, V.13
Tissier, C.14
Zhang, P.15
Huala, E.16
-
10
-
-
2442534197
-
End-to-end template jumping by the reverse transcriptase encoded by the R2 retrotransposon
-
10.1074/jbc.M310450200. 14752111
-
End-to-end template jumping by the reverse transcriptase encoded by the R2 retrotransposon. Bibillo A Eickbush TH, J Biol Chem 2004 279 14945 14953 10.1074/jbc.M310450200 14752111
-
(2004)
J Biol Chem
, vol.279
, pp. 14945-14953
-
-
Bibillo, A.1
Eickbush, T.H.2
-
11
-
-
4344651631
-
Retroelements and formation of chimeric retrogenes
-
10.1007/s00018-004-4041-z. 15316654
-
Retroelements and formation of chimeric retrogenes. Buzdin AA, Cell Mol Life Sci 2004 61 2046 2059 10.1007/s00018-004-4041-z 15316654
-
(2004)
Cell Mol Life Sci
, vol.61
, pp. 2046-2059
-
-
Buzdin, A.A.1
-
12
-
-
67249092083
-
Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes
-
10.1093/nar/gkp183. 19305000
-
Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes. Ziolkowski PA Koczyk G, Galganski L Sadowski J, Nucleic Acids Res 2009 37 3189 3201 10.1093/nar/gkp183 19305000
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3189-3201
-
-
Ziolkowski, P.A.1
Koczyk, G.2
Galganski, L.3
Sadowski, J.4
-
13
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
10.1016/0092-8674(93)90078-5. 7679954
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Luan DD Korman MH, Jakubczak JL Eickbush TH, Cell 1993 72 595 605 10.1016/0092-8674(93)90078-5 7679954
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
14
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
10.1016/S0092-8674(00)81997-2. 8945517
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Feng Q Moran JV, Kazazian HH Jr Boeke JD, Cell 1996 87 905 916 10.1016/S0092-8674(00)81997-2 8945517
-
(1996)
Cell
, vol.87
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian Jr., H.H.3
Boeke, J.D.4
-
15
-
-
0031055331
-
Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
-
10.1073/pnas.94.5.1872. 9050872
-
Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. Jurka J, Proc Natl Acad Sci USA 1997 94 1872 1877 10.1073/pnas.94.5.1872 9050872
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 1872-1877
-
-
Jurka, J.1
-
16
-
-
0003308786
-
Molecular archeology of L1 insertions in the human genome
-
10.1186/gb-2002-3-10-research0052
-
Molecular archeology of L1 insertions in the human genome. Szak ST Pickeral OK, Makalowski W Boguski MS, Landsman D Boeke JD, Genome Biol 2002 3 0052 10.1186/gb-2002-3-10-research0052
-
(2002)
Genome Biol
, vol.3
, pp. 0052
-
-
Szak, S.T.1
Pickeral, O.K.2
Makalowski, W.3
Boguski, M.S.4
Landsman, D.5
Boeke, J.D.6
-
17
-
-
23844495159
-
LINEs, SINEs and processed pseudogenes: Parasitic strategies for genome modeling
-
10.1159/000084936. 16093656
-
LINEs, SINEs and processed pseudogenes: parasitic strategies for genome modeling. Dewannieux M Heidmann T, Cytogenet Genome Res 2005 110 35 48 10.1159/000084936 16093656
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 35-48
-
-
Dewannieux, M.1
Heidmann, T.2
-
18
-
-
0034897909
-
Identification and structural analysis of SINE elements in the Arabidopsis thaliana genome
-
10.1266/ggs.76.169. 11569500
-
Identification and structural analysis of SINE elements in the Arabidopsis thaliana genome. Myouga F Tsuchimoto S Noma K Ohtsubo H, Ohtsubo E, Genes Genet Syst 2001 76 169 179 10.1266/ggs.76.169 11569500
-
(2001)
Genes Genet Syst
, vol.76
, pp. 169-179
-
-
Myouga, F.1
Tsuchimoto, S.2
Noma, K.3
Ohtsubo, H.4
Ohtsubo, E.5
-
19
-
-
0033288597
-
Molecular paleontology of transposable elements from Arabidopsis thaliana
-
10.1023/A:1004030922447. 10952195
-
Molecular paleontology of transposable elements from Arabidopsis thaliana. Kapitonov VV Jurka J, Genetica 1999 107 27 37 10.1023/A:1004030922447 10952195
-
(1999)
Genetica
, vol.107
, pp. 27-37
-
-
Kapitonov, V.V.1
Jurka, J.2
-
20
-
-
0030065451
-
Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana
-
8852854
-
Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana. Wright DA Ke N, Smalle J Hauge BM, Goodman HM Voytas DF, Genetics 1996 142 569 578 8852854
-
(1996)
Genetics
, vol.142
, pp. 569-578
-
-
Wright, D.A.1
Ke, N.2
Smalle, J.3
Hauge, B.M.4
Goodman, H.M.5
Voytas, D.F.6
-
21
-
-
1842681942
-
Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
-
10.1073/pnas.0401243101. 15064405
-
Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea. Zhang X Wessler SR, Proc Natl Acad Sci USA 2004 101 5589 5594 10.1073/pnas.0401243101 15064405
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 5589-5594
-
-
Zhang, X.1
Wessler, S.R.2
-
22
-
-
33747768893
-
Poorly known relatives of Arabidopsis thaliana
-
10.1016/j.tplants.2006.07.005. 16893672
-
Poorly known relatives of Arabidopsis thaliana. Clauss MJ Koch MA, Trends Plant Sci 2006 11 449 459 10.1016/j.tplants.2006.07.005 16893672
-
(2006)
Trends Plant Sci
, vol.11
, pp. 449-459
-
-
Clauss, M.J.1
Koch, M.A.2
-
23
-
-
34547538793
-
Evolution and genetic differentiation among relatives of Arabidopsis thaliana
-
10.1073/pnas.0701338104. 17404224
-
Evolution and genetic differentiation among relatives of Arabidopsis thaliana. Koch MA Matschinger M, Proc Natl Acad Sci USA 2007 104 6272 6277 10.1073/pnas.0701338104 17404224
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 6272-6277
-
-
Koch, M.A.1
Matschinger, M.2
-
25
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative, 10.1038/35048692. 11130711
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Arabidopsis Genome Initiative, Nature 2000 408 796 815 10.1038/35048692 11130711
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
26
-
-
23844460820
-
Comparative evolution history of SINEs in Arabidopsis thaliana and Brassica oleracea: Evidence for a high rate of SINE loss
-
10.1159/000084976. 16093696
-
Comparative evolution history of SINEs in Arabidopsis thaliana and Brassica oleracea: evidence for a high rate of SINE loss. Lenoir A Pelissier T, Bousquet-Antonelli C Deragon JM, Cytogenet Genome Res 2005 110 441 447 10.1159/000084976 16093696
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 441-447
-
-
Lenoir, A.1
Pelissier, T.2
Bousquet-Antonelli, C.3
Deragon, J.M.4
-
27
-
-
28744453801
-
Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome
-
10.1186/gb-2004-5-10-r79. 15461797
-
Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome. Pereira V, Genome Biol 2004 5 79 10.1186/gb-2004-5-10-r79 15461797
-
(2004)
Genome Biol
, vol.5
, pp. 1879
-
-
Pereira, V.1
-
29
-
-
0035033348
-
Structural and evolutionary analysis of the copia-like elements in the Arabidopsis thaliana genome
-
11319272
-
Structural and evolutionary analysis of the copia-like elements in the Arabidopsis thaliana genome. Terol J Castillo MC Bargues M Perez-Alonso M, de Frutos R, Mol Biol Evol 2001 18 882 892 11319272
-
(2001)
Mol Biol Evol
, vol.18
, pp. 882-892
-
-
Terol, J.1
Castillo, M.C.2
Bargues, M.3
Perez-Alonso, M.4
De Frutos, R.5
-
30
-
-
0025052373
-
The structure, distribution and evolution of the Ta1 retrotransposable element family of Arabidopsis thaliana
-
2174394
-
The structure, distribution and evolution of the Ta1 retrotransposable element family of Arabidopsis thaliana. Voytas DF Konieczny A, Cummings MP Ausubel FM, Genetics 1990 126 713 721 2174394
-
(1990)
Genetics
, vol.126
, pp. 713-721
-
-
Voytas, D.F.1
Konieczny, A.2
Cummings, M.P.3
Ausubel, F.M.4
-
31
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Chimpanzee Sequencing and Analysis Consortium, 10.1038/nature04072. 16136131
-
Initial sequence of the chimpanzee genome and comparison with the human genome. Chimpanzee Sequencing and Analysis Consortium, Nature 2005 437 69 87 10.1038/nature04072 16136131
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
32
-
-
33846912203
-
Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons
-
10.1016/j.gene.2006.08.029. 17055192
-
Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons. Lee J Cordaux R Han K Wang J, Hedges DJ Liang P, Batzer MA, Gene 2007 390 18 27 10.1016/j.gene.2006.08.029 17055192
-
(2007)
Gene
, vol.390
, pp. 18-27
-
-
Lee, J.1
Cordaux, R.2
Han, K.3
Wang, J.4
Hedges, D.J.5
Liang, P.6
Batzer, M.A.7
-
33
-
-
66049147797
-
Comparative analysis of Alu repeats in primate genomes
-
10.1101/gr.083972.108. 19411604
-
Comparative analysis of Alu repeats in primate genomes. Liu GE Alkan C Jiang L Zhao S, Eichler EE, Genome Res 2009 19 876 885 10.1101/gr.083972.108 19411604
-
(2009)
Genome Res
, vol.19
, pp. 876-885
-
-
Liu, G.E.1
Alkan, C.2
Jiang, L.3
Zhao, S.4
Eichler, E.E.5
-
34
-
-
0027375702
-
Pl-Bh, an anthocyanin regulatory gene of maize that leads to variegated pigmentation
-
7694886
-
Pl-Bh, an anthocyanin regulatory gene of maize that leads to variegated pigmentation. Cocciolone SM Cone KC, Genetics 1993 135 575 588 7694886
-
(1993)
Genetics
, vol.135
, pp. 575-588
-
-
Cocciolone, S.M.1
Cone, K.C.2
-
35
-
-
0029360727
-
Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR
-
10.1046/j.1365-313X.1995.08030457.x. 7550382
-
Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Liu YG Mitsukawa N, Oosumi T Whittier RF, Plant J 1995 8 457 463 10.1046/j.1365-313X.1995.08030457.x 7550382
-
(1995)
Plant J
, vol.8
, pp. 457-463
-
-
Liu, Y.G.1
Mitsukawa, N.2
Oosumi, T.3
Whittier, R.F.4
-
36
-
-
0031574072
-
The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
10.1093/nar/25.24.4876. 9396791
-
The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Thompson JD Gibson TJ Plewniak F Jeanmougin F, Higgins DG, Nucleic Acids Res 1997 25 4876 4882 10.1093/nar/25.24.4876 9396791
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
37
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
10.1016/S0168-9525(00)02024-2. 10827456
-
EMBOSS: the European Molecular Biology Open Software Suite. Rice P Longden I Bleasby A, Trends Genet 2000 16 276 277 10.1016/S0168-9525(00)02024-2 10827456
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
38
-
-
2142738304
-
WebLogo: A sequence logo generator
-
10.1101/gr.849004. 15173120
-
WebLogo: a sequence logo generator. Crooks GE Hon G, Chandonia JM Brenner SE, Genome Res 2004 14 1188 1190 10.1101/gr.849004 15173120
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
39
-
-
77956356324
-
-
Censor server. http://www.girinst.org/censor/
-
Censor Server
-
-
-
40
-
-
77956382149
-
-
TAIR WU-BLAST server. http://www.arabidopsis.org/wublast/index2.jsp
-
TAIR WU-BLAST Server
-
-
-
42
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
10.1159/000084979. 16093699
-
Repbase Update, a database of eukaryotic repetitive elements. Jurka J Kapitonov VV, Pavlicek A Klonowski P, Kohany O Walichiewicz J, Cytogenet Genome Res 2005 110 462 467 10.1159/000084979 16093699
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
|