Integration of glycomics knowledge and data

Handbook of Glycomics

Volumn , Issue , 2010, Pages 177-195

  York, William S ^a,b   Kochut, Krys J ^b   Miller, John A ^b  

^a UNIVERSITY OF GEORGIA   (United States)

^b NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77956288892     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-0-12-373600-0.00008-1     Document Type: Chapter

References (15)

1. Ohtsubo K, Marth JD Glycosylation in cellular mechanisms of health and disease. Cell 2006, 126:855-867.
2. Zaia J Mass spectrometry and the emerging field of glycomics. Chemistry and Biology 2008, 15:881-892.
3. Laine RA A calculation of all possible oligosaccharide isomers both branched and linear yields 1.05×1012 structures for a reducing hexasaccharide: the isomer barrier to development of single-method saccharide sequencing or synthesis systems. Glycobiology 1994, 4:759-767.
4. de Figueiredo P, Terra B, Anand JK, Hikita T, Sadilek M, Monks DE, Lenskiy A, Hakomori S, Nester EW A catalytic carbohydrate contributes to bacterial antibiotic resistance. Extremophiles 2007, 11:133-143.
5. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
6. Gruber TR A translation approach to portable ontology specifications. Knowledge Acquisition 1993, 5:199-220.
7. Sahoo SS, Thomas C, Tartir S, York WS, Sheth A. Knowledge modeling and its applications in life sciences: A tale of two ontologies. The World Wide Web Conference 2006, Edinburgh, Scotland, May 2006;22-26.
8. Thomas CJ, Sheth AP, York WS. Modular ontology design using canonical building blocks in the biochemistry domain. In: Proceedings of the International Conference on Formal Ontology in Information Systems. IOS Press, Baltimore, Maryland (USA) November 2006;9-11.
9. Horrocks I, Patel-Schneider PF, van Harmelen F From SHIQ and RDF to OWL: The making of a Web Ontology Language. J Web Semantics 2003, 1:7-26.
10. Schomburg I, Chang A, Schomburg D BRENDA, enzyme data and metabolic information. Nucleic Acids Res 2002, 30:47-49.
11. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res 2009, 37:D233-D238.
12. Ranzinger R, Herget S, Wetter T, von der Lieth C-W GlycomeDB-integration of open-access carbohydrate structure databases. BMC Bioinformatics 2008, 9:384.
13. Herget S, Ranzinger R, Maass K, Lieth CW GlycoCT-a unifying sequence format for carbohydrates. Carbohydr Res 2008, 343:2162-2171.
14. Nimmagadda S, Basu A, Eavenson M, Han J, Janik M, Narra R, Nimmagadda K, Sharma A, Kochut KJ, Miller JA, York WS. GlycoVault: A bioinformatics infrastructure for glycan pathway visualization, analysis, and modeling. In: Fifth International Conference on Information Technology: New Generation, p. 692-7.
15. Eavenson M, Janik M, Nimmagadda S, Miller JA, Kochut KJ, York WS GlycoBrowser: A tool for contextual visualization of biological data and pathways using ontologies. Bioinformatics Research and Applications 2008, 305-316. Springer, Berlin/Heidelberg. S. Istrail, P. Pevzner, M. Waterman (Eds.).