Differential glycan profiling by lectin microarray targeting tissue specimens

Methods in Enzymology

Volumn 478, Issue C, 2010, Pages 165-179

  Kuno, Atsushi ^a   Matsuda, Atsushi ^a   Ikehara, Yuzuru ^a   Narimatsu, Hisashi ^a   Hirabayashi, Jun ^a  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

Biomarker; Glycoalteration; Lectin microarray; Tissue section

Indexed keywords

FORMALDEHYDE; GLYCAN; GLYCOPROTEIN; LECTIN; PODOPLANIN;

BOOK; CARBOHYDRATE ANALYSIS; CELL DEDIFFERENTIATION; CONTROLLED STUDY; HISTOCHEMISTRY; HUMAN; HUMAN CELL; HUMAN TISSUE; MICROARRAY ANALYSIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; STATISTICAL ANALYSIS; TISSUE; TISSUE MICROARRAY;

EID: 77956286411     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(10)78007-1     Document Type: Chapter

References (20)

1. Brooks S.A., Leathem A.J. Prediction of lymph node involvement in breast cancer by detection of altered glycosylation in the primary tumour. Lancet 1991, 338:71-74.
2. Fukuda M. Possible roles of tumor-associated carbohydrate antigens. Cancer Res. 1996, 56:2237-2244.
3. Hirabayashi J. Lectin-based structural glycomics: Glycoproteomics and glycan profiling. Glycoconj. J. 2004, 21:35-40.
4. Kakeji Y., Tsujitani S., Mori M., Maehara Y., Sugimachi K. Helix pomatia agglutinin binding activity is a predictor of survival time for patients with gastric carcinoma. Cancer 1991, 68:2438-2442.
5. Kondo T., Hirohashi S. Application of highly sensitive fluorescent dyes (CyDye DIGE Fluor saturation dyes) to laser microdissection and two-dimensional difference gel electrophoresis (2D-DIGE) for cancer proteomics. Nat. Protoc. 2006, 1:2940-2956.
6. Kononen J., Bubendorf L., Kallioniemi A., Barlund M., Schraml P., Leighton S., Torhorst J., Mihatsch M.J., Sauter G., Kallioniemi O.-P. Tissue microarrays for high-throughput molecular profiling of tumor specimens. Nat. Med. 1998, 4:844-847.
7. Korekane H., Shida K., Murata K., Ohue M., Sasaki Y., Imaoka S., Miyamoto Y. Evaluation of laser microdessection as a tool in cancer glycomic studies. Biochem. Biophys. Res. Commun. 2007, 352:579-586.
8. Kuno A., Uchiyama N., Koseki-Kuno S., Ebe Y., Takashima S., Yamada Y., Hirabayashi J. Evanescent-field fluorescence-assisted lectin microarray: A new strategy for glycan profiling. Nat. Methods 2005, 2:851-856.
9. Kuno A., Itakura Y., Toyoda M., Takahashi Y., Yamada M., Umezawa A., Hirabayashi J. Development of a data-mining system for differential profiling of cell glycoproteins based on lectin microarray. J. Proteomics Bioinform. 2008, 1:68-72.
10. Kuno A., Kato Y., Matsuda A., Kaneko M.K., Ito H., Amano K., Chiba Y., Narimatsu H., Hirabayashi J. Focused differential glycan analysis with the platform antibody-assisted lectin profiling (ALP) for glycan-related biomarker verification. Mol. Cell. Proteomics 2009, 8:99-108.
11. Liu Y., He J., Li C., Benitez R., Fu S., Marrero J., Lubman D.M. Identification and confirmation of biomarkers using an integrated platform for quantitative analysis of glycoproteins and their glycosylations. J. Proteome Res. 2010, 9:798-805.
12. Matsuda A., Kuno A., Ishida H., Kawamoto T., Shoda J.-I., Hirabayashi J. Development of an all-in-one technology for glycan profiling targeting formalin-embedded tissue sections. Biochem. Biophys. Res. Commun. 2008, 370:259-263.
13. Matsuda A., Kuno A., Kawamoto T., Matsuzaki H., Irimura T., Ikehara Y., Zen Y., Nakanuma Y., Yamamoto M., Ohkohchi N., Shoda J.-I., Hirabayashi J., et al. Wisteria floribunda agglutinin-positive MUC1 is a sensitive biliary marker for human intrahepatic cholangiocarcinoma. Hepatology 2010, 52:174-182.
14. Misonou Y., Shida K., Korekane H., Seki Y., Noura S., Ohue M., Miyamoto Y. Comprehensive clinico-glycomic study of 16 colorectal cancer specimens: Elucidation of aberrant glycosylation and its mechanistic causes in colorectal cancer cells. J. Proteome Res. 2009, 8:2990-3005.
15. Narimatsu H., Sawaki H., Kuno A., Kaji H., Ito H., Ikehara Y. A strategy for discovery of cancer glyco-biomarkers in serum using newly developed technologies for glycoproteomics. FEBS J. 2010, 277:95-105.
16. Schumacher U., Higgs D., Loizidou M., Pickering R., Leathem A., Taylor I. Helix pomatia agglutinin binding is a useful prognostic indicator in colorectal carcinoma. Cancer 1994, 74:3104-3107.
17. Taniguchi N., Miyoshi E., Ko J.H., Ikeda Y., Ihara Y. Implication of N-acetylglucosaminyltransferases III and V in cancer: Gene regulation and signaling mechanism. Biochim. Biophys. Acta 1999, 1455:287-300.
18. Thöm I., Schult-Kronefeld O., Burkholder I., Goern M., Andritzky B., Blonski K., Kugler C., Edler L., Bokemeyer C., Schumacher U., Laack E. Lectin histochemistry of metastatic adenocarcinomas of the lung. Lung Cancer 2007, 56:391-397.
19. Uchiyama N., Kuno A., Koseki-Kuno S., Ebe Y., Horio K., Yamada M., Hirabayashi J. Development of a lectin microarray based on an evanescent-field fluorescence principle. Methods Enzymol. 2006, 415:341-351.
20. Uchiyama N., Kuno A., Tateno H., Kubo Y., Mizuno M., Noguchi M., Hirabayashi J. Optimization of evanescent-field fluorescence-assisted lectin microarray for high-sensitivity detection of monovalent oligosaccharides and glycoproteins. Proteomics 2008, 8:3042-3050.