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Volumn 5, Issue 5, 2010, Pages

Rapid multi-locus sequence typing using microfluidic biochips

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; GENOMIC DNA;

EID: 77956282648     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0010595     Document Type: Article
Times cited : (12)

References (29)
  • 2
    • 68649100921 scopus 로고    scopus 로고
    • Molecular typing methodologies for microbial source tracking and epidemiological investigations of Gram-negative bacterial foodborne pathogens
    • Foley SL, Lynne AM, Nayak R (2009) Molecular typing methodologies for microbial source tracking and epidemiological investigations of Gram-negative bacterial foodborne pathogens. Infect Genet Evol 9: 430-440.
    • (2009) Infect Genet Evol , vol.9 , pp. 430-440
    • Foley, S.L.1    Lynne, A.M.2    Nayak, R.3
  • 3
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5
  • 5
    • 42049090179 scopus 로고    scopus 로고
    • Convergence of Campylobacter species: Implications for bacterial evolution
    • Sheppard SK, McCarthy ND, Falush D, Maiden MC (2008) Convergence of Campylobacter species: implications for bacterial evolution. Science 320: 237-239.
    • (2008) Science , vol.320 , pp. 237-239
    • Sheppard, S.K.1    McCarthy, N.D.2    Falush, D.3    Maiden, M.C.4
  • 7
    • 3342926241 scopus 로고    scopus 로고
    • Multilocus sequence typing-what is resolved?
    • Cooper JE, Feil EJ (2004) Multilocus sequence typing-what is resolved? Trends Microbiol 12: 373-377.
    • (2004) Trends Microbiol , vol.12 , pp. 373-377
    • Cooper, J.E.1    Feil, E.J.2
  • 8
    • 0034040861 scopus 로고    scopus 로고
    • Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis-one species on the basis of genetic evidence
    • Helgason E, Okstad OA, Caugant DA, Johansen HA, Fouet A, et al. (2000) Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis-one species on the basis of genetic evidence. Appl Environ Microbiol 66: 2627-2630.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2627-2630
    • Helgason, E.1    Okstad, O.A.2    Caugant, D.A.3    Johansen, H.A.4    Fouet, A.5
  • 10
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 11
    • 26244431876 scopus 로고    scopus 로고
    • Spatial variation in Bacillus thuringiensis/cereus populations within the phyllosphere of broad-leaved dock (Rumex obtusifolius) and surrounding habitats
    • Collier FA, Elliot SL, Ellis RJ (2005) Spatial variation in Bacillus thuringiensis/cereus populations within the phyllosphere of broad-leaved dock (Rumex obtusifolius) and surrounding habitats. FEMS Microbiol Ecol 54: 417-425.
    • (2005) FEMS Microbiol Ecol , vol.54 , pp. 417-425
    • Collier, F.A.1    Elliot, S.L.2    Ellis, R.J.3
  • 13
    • 38549137822 scopus 로고    scopus 로고
    • SuperCAT: A supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
    • Tourasse NJ, Kolsto AB (2008) SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis). Nucleic Acids Res 36: D461-468.
    • (2008) Nucleic Acids Res , vol.36
    • Tourasse, N.J.1    Kolsto, A.B.2
  • 14
    • 0036198431 scopus 로고    scopus 로고
    • Genetic differentiation between sympatric populations of Bacillus cereus and Bacillus thuringiensis
    • Vilas-Boas G, Sanchis V, Lereclus D, Lemos MV, Bourguet D (2002) Genetic differentiation between sympatric populations of Bacillus cereus and Bacillus thuringiensis. Appl Environ Microbiol 68: 1414-1424.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1414-1424
    • Vilas-Boas, G.1    Sanchis, V.2    Lereclus, D.3    Lemos, M.V.4    Bourguet, D.5
  • 15
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor-joining method
    • Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 101: 11030-11035.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3
  • 16
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 17
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG (2004) eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186: 1518-1530.
    • (2004) J Bacteriol , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 18
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R (2006) UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7: 371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 19
    • 0025207507 scopus 로고
    • Miniaturized Total Chemical Analysis Systems: A Novel Concept for Chemical Sensing
    • Manz A, Graber N, Widmer HM (1990) Miniaturized Total Chemical Analysis Systems: A Novel Concept for Chemical Sensing, Sensors and Actuators B1: 244-248.
    • (1990) Sensors and Actuators , vol.B1 , pp. 244-248
    • Manz, A.1    Graber, N.2    Widmer, H.M.3
  • 20
    • 0025875752 scopus 로고
    • Comparitive analysis of Bacillus anthracis, Bacillus cereus and related species on the basis of reverse transcriptase sequencing of 16S rRNA
    • Ash C, Farrow JA, Dorsch M, Stackebrandt E, Collins MD (1991) Comparitive analysis of Bacillus anthracis, Bacillus cereus and related species on the basis of reverse transcriptase sequencing of 16S rRNA. Int J System Bacteriol 41: 343-346.
    • (1991) Int J System Bacteriol , vol.41 , pp. 343-346
    • Ash, C.1    Farrow, J.A.2    Dorsch, M.3    Stackebrandt, E.4    Collins, M.D.5
  • 21
    • 40149090779 scopus 로고    scopus 로고
    • Isolation by distance in the spore-forming soil bacterium Myxococcus xanthus
    • Vos M, Velicer GJ (2008) Isolation by distance in the spore-forming soil bacterium Myxococcus xanthus. Curr Biol 18: 386-391.
    • (2008) Curr Biol , vol.18 , pp. 386-391
    • Vos, M.1    Velicer, G.J.2
  • 22
    • 34547702305 scopus 로고    scopus 로고
    • Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches
    • Walk ST, Alm EW, Calhoun LM, Mladonicky JM, Whittam TS (2007) Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches. Environ Microbiol 9: 2274-2288.
    • (2007) Environ Microbiol , vol.9 , pp. 2274-2288
    • Walk, S.T.1    Alm, E.W.2    Calhoun, L.M.3    Mladonicky, J.M.4    Whittam, T.S.5
  • 25
    • 70350514201 scopus 로고    scopus 로고
    • Fast Multiplexed Polymerase Chain Reaction for Conventional and Microfluidic Short Tandem Repeat Analysis
    • in press
    • Giese H, Lam R, Selden R, Tan E (2009) Fast Multiplexed Polymerase Chain Reaction For Conventional and Microfluidic Short Tandem Repeat Analysis. J Forensic Sci in press.
    • (2009) J Forensic Sci
    • Giese, H.1    Lam, R.2    Selden, R.3    Tan, E.4
  • 26
    • 13244267001 scopus 로고    scopus 로고
    • mlstdbNet - distributed multi-locus sequence typing (MLST) databases
    • Jolley KA, Chan MS, Maiden MC (2004) mlstdbNet - distributed multi-locus sequence typing (MLST) databases. BMC Bioinformatics 5: 86.
    • (2004) BMC Bioinformatics , vol.5 , pp. 86
    • Jolley, K.A.1    Chan, M.S.2    Maiden, M.C.3
  • 27
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 28
    • 0023375195 scopus 로고
    • The neighbour-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 15744391709 scopus 로고    scopus 로고
    • Multilocus sequence typing reveals that Bacillus cereus strains isolated from clinical infections have distinct phylogenetic origins
    • Barker M, Thakker B, Priest FG (2005) Multilocus sequence typing reveals that Bacillus cereus strains isolated from clinical infections have distinct phylogenetic origins. FEMS Microbiol Lett 245: 179-184.
    • (2005) FEMS Microbiol Lett , vol.245 , pp. 179-184
    • Barker, M.1    Thakker, B.2    Priest, F.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.