-
1
-
-
35348927529
-
Noncoding transcription controls downstream promoters to regulate T-cell receptor α recombination
-
doi:10.1038/sj.emboj.7601866
-
Abarrategui, I., and M.S. Krangel. 2007. Noncoding transcription controls downstream promoters to regulate T-cell receptor α recombination. EMBO J. 26:4380-4390. doi:10.1038/sj.emboj.7601866
-
(2007)
EMBO J.
, vol.26
, pp. 4380-4390
-
-
Abarrategui, I.1
Krangel, M.S.2
-
2
-
-
0345701296
-
T cell receptor (TCR) α/δ locus enhancer identity and position are critical for the assembly of TCR δ and α variable region genes
-
doi:10.1073/pnas.0437943100
-
Bassing, C.H., R.E. Tillman, B.B. Woodman, D. Canty, R.J. Monroe, B.P. Sleckman, and F.W. Alt. 2003. T cell receptor (TCR) α/δ locus enhancer identity and position are critical for the assembly of TCR δ and α variable region genes. Proc. Natl. Acad. Sci. USA. 100:2598-2603. doi:10.1073/pnas.0437943100
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 2598-2603
-
-
Bassing, C.H.1
Tillman, R.E.2
Woodman, B.B.3
Canty, D.4
Monroe, R.J.5
Sleckman, B.P.6
Alt, F.W.7
-
3
-
-
33750465872
-
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
-
doi:10.1038/ng1913
-
Cai, S., C.C. Lee, and T. Kohwi-Shigematsu. 2006. SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nat. Genet. 38:1278-1288. doi:10.1038/ng1913
-
(2006)
Nat. Genet.
, vol.38
, pp. 1278-1288
-
-
Cai, S.1
Lee, C.C.2
Kohwi-Shigematsu, T.3
-
4
-
-
70350509577
-
KING (Kinemage, Next Generation): A versatile interactive molecular and scientific visualization program
-
doi:10.1002/pro.250
-
Chen, V.B., I.W. Davis, and D.C. Richardson. 2009. KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program. Protein Sci. 18:2403-2409. doi:10.1002/pro.250
-
(2009)
Protein Sci.
, vol.18
, pp. 2403-2409
-
-
Chen, V.B.1
Davis, I.W.2
Richardson, D.C.3
-
5
-
-
33747849302
-
Accessibility control of V(D)J recombination
-
doi:10.1016/S0065-2776(06)91002-5
-
Cobb, R.M., K.J. Oestreich, O.A. Osipovich, and E.M. Oltz. 2006. Accessibility control of V(D)J recombination. Adv. Immunol. 91:45-109. doi:10.1016/S0065-2776(06)91002-5
-
(2006)
Adv. Immunol.
, vol.91
, pp. 45-109
-
-
Cobb, R.M.1
Oestreich, K.J.2
Osipovich, O.A.3
Oltz, E.M.4
-
6
-
-
1542343974
-
Pax5 induces V-to-DJ rearrangements and locus contraction of the immunoglobulin heavy-chain gene
-
doi:10.1101/gad.291504
-
Fuxa, M., J. Skok, A. Souabni, G. Salvagiotto, E. Roldan, and M. Busslinger. 2004. Pax5 induces V-to-DJ rearrangements and locus contraction of the immunoglobulin heavy-chain gene. Genes Dev. 18:411-422. doi:10.1101/gad. 291504
-
(2004)
Genes Dev.
, vol.18
, pp. 411-422
-
-
Fuxa, M.1
Skok, J.2
Souabni, A.3
Salvagiotto, G.4
Roldan, E.5
Busslinger, M.6
-
7
-
-
23944472244
-
Regulation of TCR δ and α repertoires by local and long-distance control of variable gene segment chromatin structure
-
doi:10.1084/jem.20050680
-
Hawwari, A., and M.S. Krangel. 2005. Regulation of TCR δ and α repertoires by local and long-distance control of variable gene segment chromatin structure. J. Exp. Med. 202:467-472. doi:10.1084/jem.20050680
-
(2005)
J. Exp. Med.
, vol.202
, pp. 467-472
-
-
Hawwari, A.1
Krangel, M.S.2
-
8
-
-
33846475100
-
Role for rearranged variable gene segments in directing secondary T cell receptor α recombination
-
doi:10.1073/pnas.0608248104
-
Hawwari, A., and M.S. Krangel. 2007. Role for rearranged variable gene segments in directing secondary T cell receptor α recombination. Proc. Natl. Acad. Sci. USA. 104:903-907. doi:10.1073/pnas.0608248104
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 903-907
-
-
Hawwari, A.1
Krangel, M.S.2
-
9
-
-
18244406271
-
Regulation of T cell receptor α gene assembly by a complex hierarchy of germline Jalpha promoters
-
doi:10.1038/ni1189
-
Hawwari, A., C. Bock, and M.S. Krangel. 2005. Regulation of T cell receptor α gene assembly by a complex hierarchy of germline Jalpha promoters. Nat. Immunol. 6:481-489. doi:10.1038/ni1189
-
(2005)
Nat. Immunol.
, vol.6
, pp. 481-489
-
-
Hawwari, A.1
Bock, C.2
Krangel, M.S.3
-
10
-
-
0037229028
-
Pax5 is required for recombination of transcribed, acetylated, 5′ IgH V gene segments
-
doi:10.1101/gad.1031403
-
Hesslein, D.G., D.L. Pflugh, D. Chowdhury, A.L. Bothwell, R. Sen, and D.G. Schatz. 2003. Pax5 is required for recombination of transcribed, acetylated, 5′ IgH V gene segments. Genes Dev. 17:37-42. doi:10.1101/gad.1031403
-
(2003)
Genes Dev.
, vol.17
, pp. 37-42
-
-
Hesslein, D.G.1
Pflugh, D.L.2
Chowdhury, D.3
Bothwell, A.L.4
Sen, R.5
Schatz, D.G.6
-
11
-
-
41949121201
-
The 3D structure of the immunoglobulin heavy-chain locus: Implications for long-range genomic interactions
-
doi:10.1016/j.cell.2008.03.024
-
Jhunjhunwala, S., M.C. van Zelm, M.M. Peak, S. Cutchin, R. Riblet, J.J. van Dongen, F.G. Grosveld, T.A. Knoch, and C. Murre. 2008. The 3D structure of the immunoglobulin heavy-chain locus: implications for long-range genomic interactions. Cell. 133:265-279. doi:10.1016/j.cell.2008.03.024
-
(2008)
Cell
, vol.133
, pp. 265-279
-
-
Jhunjhunwala, S.1
Van Zelm, M.C.2
Peak, M.M.3
Cutchin, S.4
Riblet, R.5
Van Dongen, J.J.6
Grosveld, F.G.7
Knoch, T.A.8
Murre, C.9
-
12
-
-
68049086918
-
Chromatin architecture and the generation of antigen receptor diversity
-
doi:10.1016/j.cell.2009.07.016
-
Jhunjhunwala, S., M.C. van Zelm, M.M. Peak, and C. Murre. 2009. Chromatin architecture and the generation of antigen receptor diversity. Cell. 138:435-448. doi:10.1016/j.cell.2009.07.016
-
(2009)
Cell
, vol.138
, pp. 435-448
-
-
Jhunjhunwala, S.1
Van Zelm, M.C.2
Peak, M.M.3
Murre, C.4
-
13
-
-
0037023361
-
Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development
-
doi:10.1126/science.1068768
-
Kosak, S.T., J.A. Skok, K.L. Medina, R. Riblet, M.M. Le Beau, A.G. Fisher, and H. Singh. 2002. Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development. Science. 296:158-162. doi:10.1126/science. 1068768
-
(2002)
Science
, vol.296
, pp. 158-162
-
-
Kosak, S.T.1
Skok, J.A.2
Medina, K.L.3
Riblet, R.4
Le Beau, M.M.5
Fisher, A.G.6
Singh, H.7
-
14
-
-
65249145203
-
Mechanics of T cell receptor gene rearrangement
-
doi:10.1016/j.coi.2009.03.009
-
Krangel, M.S. 2009. Mechanics of T cell receptor gene rearrangement. Curr. Opin. Immunol. 21:133-139. doi:10.1016/j.coi.2009.03.009
-
(2009)
Curr. Opin. Immunol.
, vol.21
, pp. 133-139
-
-
Krangel, M.S.1
-
15
-
-
3242882807
-
Enforcing order within a complex locus: Current perspectives on the control of V(D)J recombination at the murine T-cell receptor α/δ locus
-
doi:10.1111/j.0105-2896.2004.00155.x
-
Krangel, M.S., J. Carabana, I. Abbarategui, R. Schlimgen, and A. Hawwari. 2004. Enforcing order within a complex locus: current perspectives on the control of V(D)J recombination at the murine T-cell receptor α/δ locus. Immunol. Rev. 200:224-232. doi:10.1111/j.0105-2896.2004.00155.x
-
(2004)
Immunol. Rev.
, vol.200
, pp. 224-232
-
-
Krangel, M.S.1
Carabana, J.2
Abbarategui, I.3
Schlimgen, R.4
Hawwari, A.5
-
16
-
-
16244398049
-
Long-range interactions between three transcriptional enhancers, active Vkappa gene promoters, and a 3′ boundary sequence spanning 46 kilobases
-
doi:10.1128/MCB.25.8.3220-3231.2005
-
Liu, Z., and W.T. Garrard. 2005. Long-range interactions between three transcriptional enhancers, active Vkappa gene promoters, and a 3′ boundary sequence spanning 46 kilobases. Mol. Cell. Biol. 25:3220-3231. doi:10.1128/MCB.25.8.3220-3231.2005
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 3220-3231
-
-
Liu, Z.1
Garrard, W.T.2
-
17
-
-
34249035911
-
Yin Yang 1 is a critical regulator of B-cell development
-
doi:10.1101/gad.1529307
-
Liu, H., M. Schmidt-Supprian, Y. Shi, E. Hobeika, N. Barteneva, H. Jumaa, R. Pelanda, M. Reth, J. Skok, K. Rajewsky, and Y. Shi. 2007. Yin Yang 1 is a critical regulator of B-cell development. Genes Dev. 21:1179-1189. doi:10.1101/gad.1529307
-
(2007)
Genes Dev.
, vol.21
, pp. 1179-1189
-
-
Liu, H.1
Schmidt-Supprian, M.2
Shi, Y.3
Hobeika, E.4
Barteneva, N.5
Jumaa, H.6
Pelanda, R.7
Reth, M.8
Skok, J.9
Rajewsky, K.10
Shi, Y.11
-
18
-
-
0033136297
-
Developmental regulation of TCR δ locus accessibility and expression by the TCR δ enhancer
-
doi:10.1016/S1074-7613(00)80050-3
-
Monroe, R.J., B.P. Sleckman, B.C. Monroe, B. Khor, S. Claypool, R. Ferrini, L. Davidson, and F.W. Alt. 1999. Developmental regulation of TCR δ locus accessibility and expression by the TCR δ enhancer. Immunity. 10:503-513. doi:10.1016/S1074-7613(00)80050-3
-
(1999)
Immunity
, vol.10
, pp. 503-513
-
-
Monroe, R.J.1
Sleckman, B.P.2
Monroe, B.C.3
Khor, B.4
Claypool, S.5
Ferrini, R.6
Davidson, L.7
Alt, F.W.8
-
19
-
-
73649145481
-
Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus
-
doi:10.1371/journal.pgen.1000739
-
Nativio, R., K.S. Wendt, Y. Ito, J.E. Huddleston, S. Uribe-Lewis, K. Woodfine, C. Krueger, W. Reik, J.M. Peters, and A. Murrell. 2009. Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus. PLoS Genet. 5:e1000739. doi:10.1371/journal.pgen.1000739
-
(2009)
PLoS Genet.
, vol.5
-
-
Nativio, R.1
Wendt, K.S.2
Ito, Y.3
Huddleston, J.E.4
Uribe-Lewis, S.5
Woodfine, K.6
Krueger, C.7
Reik, W.8
Peters, J.M.9
Murrell, A.10
-
20
-
-
33646007633
-
Regulation of TCRbeta gene assembly by a promoter/enhancer holocomplex
-
doi:10.1016/j.immuni.2006.02.009
-
Oestreich, K.J., R.M. Cobb, S. Pierce, J. Chen, P. Ferrier, and E.M. Oltz. 2006. Regulation of TCRbeta gene assembly by a promoter/enhancer holocomplex. Immunity. 24:381-391. doi:10.1016/j.immuni.2006.02.009
-
(2006)
Immunity
, vol.24
, pp. 381-391
-
-
Oestreich, K.J.1
Cobb, R.M.2
Pierce, S.3
Chen, J.4
Ferrier, P.5
Oltz, E.M.6
-
21
-
-
0037020847
-
Quantitative and qualitative changes in V-J α rearrangements during mouse thymocytes differentiation: Implication for a limited T cell receptor α chain repertoire
-
doi:10.1084/jem.20021074
-
Pasqual, N., M. Gallagher, C. Aude-Garcia, M. Loiodice, F. Thuderoz, J. Demongeot, R. Ceredig, P.N. Marche, and E. Jouvin-Marche. 2002. Quantitative and qualitative changes in V-J α rearrangements during mouse thymocytes differentiation: implication for a limited T cell receptor α chain repertoire. J. Exp. Med. 196:1163-1173. doi:10.1084/jem.20021074
-
(2002)
J. Exp. Med.
, vol.196
, pp. 1163-1173
-
-
Pasqual, N.1
Gallagher, M.2
Aude-Garcia, C.3
Loiodice, M.4
Thuderoz, F.5
Demongeot, J.6
Ceredig, R.7
Marche, P.N.8
Jouvin-Marche, E.9
-
22
-
-
47849118209
-
Regulation of B cell fate commitment and immunoglobulin heavy-chain gene rearrangements by Ikaros
-
doi:10.1038/ni.1626
-
Reynaud, D., I.A. Demarco, K.L. Reddy, H. Schjerven, E. Bertolino, Z. Chen, S.T. Smale, S. Winandy, and H. Singh. 2008. Regulation of B cell fate commitment and immunoglobulin heavy-chain gene rearrangements by Ikaros. Nat. Immunol. 9:927-936. doi:10.1038/ni.1626
-
(2008)
Nat. Immunol.
, vol.9
, pp. 927-936
-
-
Reynaud, D.1
Demarco, I.A.2
Reddy, K.L.3
Schjerven, H.4
Bertolino, E.5
Chen, Z.6
Smale, S.T.7
Winandy, S.8
Singh, H.9
-
23
-
-
0027049243
-
The kinemage: A tool for scientific communication
-
doi:10.1002/pro.5560010102
-
Richardson, D.C., and J.S. Richardson. 1992. The kinemage: a tool for scientific communication. Protein Sci. 1:3-9. doi:10.1002/pro.5560010102
-
(1992)
Protein Sci.
, vol.1
, pp. 3-9
-
-
Richardson, D.C.1
Richardson, J.S.2
-
24
-
-
12344270023
-
Locus 'decontraction' and centromeric recruitment contribute to allelic exclusion of the immunoglobulin heavychain gene
-
doi:10.1038/ni1150
-
Roldán, E., M. Fuxa, W. Chong, D. Martinez, M. Novatchkova, M. Busslinger, and J.A. Skok. 2005. Locus 'decontraction' and centromeric recruitment contribute to allelic exclusion of the immunoglobulin heavychain gene. Nat. Immunol. 6:31-41. doi:10.1038/ni1150
-
(2005)
Nat. Immunol.
, vol.6
, pp. 31-41
-
-
Roldán, E.1
Fuxa, M.2
Chong, W.3
Martinez, D.4
Novatchkova, M.5
Busslinger, M.6
Skok, J.A.7
-
25
-
-
14544293217
-
Biochemistry of V(D)J recombination
-
doi:10.1007/3-540-26363-2-4
-
Schatz, D.G., and E. Spanopoulou. 2005. Biochemistry of V(D)J recombination. Curr. Top. Microbiol. Immunol. 290:49-85. doi:10.1007/3-540- 26363-2-4
-
(2005)
Curr. Top. Microbiol. Immunol.
, vol.290
, pp. 49-85
-
-
Schatz, D.G.1
Spanopoulou, E.2
-
26
-
-
45549086756
-
Initiation of allelic exclusion by stochastic interaction of Tcrb alleles with repressive nuclear compartments
-
doi:10.1038/ni.1624
-
Schlimgen, R.J., K.L. Reddy, H. Singh, and M.S. Krangel. 2008. Initiation of allelic exclusion by stochastic interaction of Tcrb alleles with repressive nuclear compartments. Nat. Immunol. 9:802-809. doi:10.1038/ni.1624
-
(2008)
Nat. Immunol.
, vol.9
, pp. 802-809
-
-
Schlimgen, R.J.1
Reddy, K.L.2
Singh, H.3
Krangel, M.S.4
-
27
-
-
34248583377
-
Reversible contraction by looping of the Tcra and Tcrb loci in rearranging thymocytes
-
doi:10.1038/ni1448
-
Skok, J.A., R. Gisler, M. Novatchkova, D. Farmer, W. de Laat, and M. Busslinger. 2007. Reversible contraction by looping of the Tcra and Tcrb loci in rearranging thymocytes. Nat. Immunol. 8:378-387. doi:10.1038/ni1448
-
(2007)
Nat. Immunol.
, vol.8
, pp. 378-387
-
-
Skok, J.A.1
Gisler, R.2
Novatchkova, M.3
Farmer, D.4
De Laat, W.5
Busslinger, M.6
-
28
-
-
0030663194
-
Function of the TCR α enhancer in alphabeta and gammadelta T cells
-
doi:10.1016/S1074-7613(00)80372-6
-
Sleckman, B.P., C.G. Bardon, R. Ferrini, L. Davidson, and F.W. Alt. 1997. Function of the TCR α enhancer in alphabeta and gammadelta T cells. Immunity. 7:505-515. doi:10.1016/S1074-7613(00)80372-6
-
(1997)
Immunity
, vol.7
, pp. 505-515
-
-
Sleckman, B.P.1
Bardon, C.G.2
Ferrini, R.3
Davidson, L.4
Alt, F.W.5
-
29
-
-
33748259774
-
CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus
-
doi:10.1101/gad.399506
-
Splinter, E., H. Heath, J. Kooren, R.J. Palstra, P. Klous, F. Grosveld, N. Galjart, and W. de Laat. 2006. CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus. Genes Dev. 20:2349-2354. doi:10.1101/gad.399506
-
(2006)
Genes Dev.
, vol.20
, pp. 2349-2354
-
-
Splinter, E.1
Heath, H.2
Kooren, J.3
Palstra, R.J.4
Klous, P.5
Grosveld, F.6
Galjart, N.7
De Laat, W.8
-
30
-
-
0030273709
-
Defect in rearrangement of the most 5′ TCR-J α following targeted deletion of T early α (TEA): Implications for TCR α locus accessibility
-
doi:10.1016/S1074-7613(00)80259-9
-
Villey, I., D. Caillol, F. Selz, P. Ferrier, and J.P. de Villartay. 1996. Defect in rearrangement of the most 5′ TCR-J α following targeted deletion of T early α (TEA): implications for TCR α locus accessibility. Immunity. 5:331-342. doi:10.1016/S1074-7613(00)80259-9
-
(1996)
Immunity
, vol.5
, pp. 331-342
-
-
Villey, I.1
Caillol, D.2
Selz, F.3
Ferrier, P.4
De Villartay, J.P.5
|