Expansion of genes encoding a novel type of dynamin in the genome of the pea aphid, Acyrthosiphon pisum

Insect Molecular Biology

Volumn 19, Issue SUPPL. 2, 2010, Pages 165-173

  Nakabachi, A ^a   Miyagishima, S ^a  

^a RIKEN   (Japan)

Author keywords

Aphid; Dynamin; Expression; Gene expansion; Phylogeny

Indexed keywords

ACYRTHOSIPHON PISUM; APHIDIDAE; METAZOA; PISUM SATIVUM;

DYNAMIN; INSECT PROTEIN; PRIMER DNA;

AMINO ACID SEQUENCE; ANIMAL; APHID; ARTICLE; DISEASE CARRIER; ENZYMOLOGY; GENE; GENE EXPRESSION; GENETICS; GENOME; MOLECULAR GENETICS; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PARASITOLOGY; PEA; PHYLOGENY; PLANT VIRUS; SEQUENCE HOMOLOGY; VIROLOGY;

AMINO ACID SEQUENCE; ANIMALS; APHIDS; BASE SEQUENCE; DNA PRIMERS; DYNAMINS; GENE EXPRESSION; GENES, INSECT; GENOME, INSECT; INSECT PROTEINS; INSECT VECTORS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PEAS; PHYLOGENY; PLANT VIRUSES; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 77956213375     PISSN: 09621075     EISSN: 13652583     Source Type: Journal    
DOI: 10.1111/j.1365-2583.2009.00941.x     Document Type: Article

References (33)

1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
2. Bendtsen, J.D., Nielsen, H., von Heijne, G. and Brunak, S. (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783-795.
3. Buchner, P. (1965) Endosymbiosis of Animals with Plant Microorganisms. Interscience, New York.
4. Cherry, S. and Perrimon, N. (2004) Entry is a rate-limiting step for viral infection in a Drosophila melanogaster model of patho-genesis. Nat Immunol 5: 81-87.
5. Douglas, A.E. (1998) Nutritional interactions in insect-microbial symbioses: aphids and their symbiotic bacteria Buchnera. Annu Rev Entomol 43: 17-37.
6. Emanuelsson, O., Nielsen, H., Brunak, S. and von Heijne, G. (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300: 1005-1016.
7. Febvay, G., Liadouze, I., Guillaud, J. and Bonnot, G. (1995) Analysis of energetic amino acid metabolism in Acyrthosiphon pisum: a multidimensional approach to amino acid metabolism in aphids. Arch Insect Biochem 29: 45-69.
8. Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368-376.
9. Finn, R.D., Tate, J., Mistry, J., Coggill, P.C., Sammut, S.J., Hotz, H.R. et al. (2008) The Pfam protein families database. Nucleic Acids Res 36: D281-D288.
10. Gray, S. and Gildow, F.E. (2003) Luteovirus-aphid interactions. Annu Rev Phytopathol 41: 539-566.
11. Griffiths, G.W. and Beck, S.D. (1973) Intracellular symbiotes of the pea aphid, Acyrthosiphon pisum. J Insect Physiol 19: 75-84.
12. Hinde, R. (1971) The control of the mycetome symbiotes of the aphids Brevicoryne brassicae, Myzus persicae, and Macrosi-phum rosae. J Insect Physiol 17: 1791-1800.
13. Hogenhout, S.A., Ammar el, D., Whitfield, A.E. and Redinbaugh, M.G. (2008) Insect vector interactions with persistently transmitted viruses. Annu Rev Phytopathol 46: 327-359
14. International Aphid Genomics Consortium (2010) Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol, DOI 10.1371/journal.pbio.1000313.
15. Krogh, A., Larsson, B., von Heijne, G. and Sonnhammer, E.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580.
16. Lupas, A., Van Dyke, M. and Stock, J. (1991) Predicting coiled coils from protein sequences. Science 252: 1162-1164.
17. Marchler-Bauer, A., Anderson, J.B., Derbyshire, M.K., DeWeese-Scott, C., Gonzales, N.R., Gwadz, M. et al. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res 35: D237-D240.
18. Marsh, M. and Helenius, A. (2006) Virus entry: open sesame. Cell 124: 729-740.
19. Miyagishima, S.Y., Kuwayama, H., Urushihara, H. and Nakanishi, H. (2008) Evolutionary linkage between eukaryotic cytokinesis and chloroplast division by dynamin proteins. Proc Natl Acad Sci USA 105: 15202-15207.
20. Moran, N.A., Munson, M.A., Baumann, P. and Ishikawa, H. (1993) A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts. Proc R Soc Lond B Biol 253: 167-171.
21. Moran, N.A., McCutcheon, J.P. and Nakabachi, A. (2008) Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet 42: 165-190.
22. Nakabachi, A. (2008) Mutualism revealed by symbiont genomics and bacteriocyte transcriptomics. In Insect Symbiosis, Vol. 3 (Bourtzis, K. and Miller, T.A., eds), pp. 163-204. CRC Press, New York.
23. Nakabachi, A. and Ishikawa, H. (1997) Differential display of mRNAs related to amino acid metabolism in the endosymbi-otic system of aphids. Insect Biochem Mol Biol 27: 1057-1062.
24. Nakabachi, A. and Ishikawa, H. (1999) Provision of riboflavin to the host aphid, Acyrthosiphon pisum, by endosymbiotic bacteria, Buchnera. J Insect Physiol 45: 1-6.
25. Nakabachi, A., Shigenobu, S., Sakazume, N., Shiraki, T., Hayashizaki, Y., Carninci, P. et al. (2005) Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera. Proc Natl Acad Sci USA 102: 5477-5482.
26. Praefcke, G.J. and McMahon, H.T. (2004) The dynamin super-family: universal membrane tubulation and fission molecules? Nat Rev Mol Cell Biol 5: 133-147.
27. Ronquist, F. and Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
28. Sasaki, T. and Ishikawa, H. (1995) Production of essential amino acids from glutamate by mycetocyte symbionts of the pea aphid, Acyrthosiphon pisum. J Insect Physiol 41: 41-46.
29. Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
30. Tamborindeguy, C., Monsion, B., Brault, V., Hunnicutt, L., Ju, H.J., Nakabachi, A. et al. (2009) A genomic analysis of virus transcytosis in the pea aphid, Acyrthosiphon pisum. Insect Mol Biol: in press.
31. Tamura, K., Dudley, J., Nei, M. and Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
32. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
33. Whitehead, L.F. and Douglas, A.E. (1993) Populations of symbiotic bacteria in the parthenogenetic pea aphid (Acyrtho-siphon pisum) symbiosis. Proc R Soc Lond B Biol Sci 254: 29-32.