Rapid non-enzymatic extraction method for isolating PCR-quality camelpox virus DNA from skin

Journal of Virological Methods

Volumn 169, Issue 1, 2010, Pages 138-142

  Yousif, A Ausama ^a   Al Naeem, A Abdelmohsen ^a   Al Ali, M Ahmad ^a  

^a KING FAISAL UNIVERSITY   (Saudi Arabia)

Author keywords

Camelpox; DNA; Extraction; Orthopox; PCR; Rapid; Sensitivity; Skin

Indexed keywords

VIRUS DNA;

ANIMAL TISSUE; ARTICLE; CAMELPOX VIRUS; CONTROLLED STUDY; DNA EXTRACTION; DNA ISOLATION; DNA PURIFICATION; INTERMETHOD COMPARISON; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; POXVIRUS; PRIORITY JOURNAL; SKIN; SKIN DEFECT;

ANIMALS; CAMELS; DNA, VIRAL; MOLECULAR SEQUENCE DATA; ORTHOPOXVIRUS; POLYMERASE CHAIN REACTION; POXVIRIDAE INFECTIONS; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; SKIN; VIROLOGY;

CAMELPOX VIRUS; ORTHOPOXVIRUS;

EID: 77956190881     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2010.07.013     Document Type: Article

References (39)

1. Afonso C.L., Tulman E.R., Lu Z., Zsak L., Sandybaev N.T., Kerembekova U.Z., Zaitsev V.L., Kutish G.F., Rock D.L. The genome of camelpox virus. Virology 2002, 295:1-9.
2. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-PLAST: a new generation of protein database search program. Nucleic Acids Res. 1997, 25:3389-3402.
3. Aljanabi S.M., Forget L., Dookun A. An improved and rapid protocol for the isolation of polysaccharide and polyphenol free sugarcane DNA. Plant Mol. Biol. Rep. 1999, 17:281.
4. AlZi'abi O., Nishikawa H., Meyer H. The first outbreak of Camelpox in Syria. J. Vet. Med. Sci. 2007, 69:541-543.
5. Balamurugan V., Bhanuprakash V., Hosamani M., Jayappa K.D., Venkatesan G., Chauhan B., Singh R.K. A polymerase chain reaction strategy for the diagnosis of camelpox. J. Vet. Diagn. Invest. 2009, 21:231-237.
6. Biase F.H., Franco M.M., Goulart L.R., Antunes R.C. Protocol for extraction of genomic DNA from swine solid tissues. Genet. Mol. Biol. 2002, 25:313-315.
7. Carter G.R., Wise D.J., Flores E.F. Poxviridae. A Concise Review of Veterinary Virology 2005, International Veterinary Information Service, Ithaca, NY, (last updated: 28.10.05; A3410.1005). http://www.ivis.org/.
8. Catton, M., 2008. Smallpox laboratory case definition. The Public Health Laboratory Network, Department of Health and Aging, Australia. http://www.health.gov.au/internet/main/publishing.nsf/Content/cda-phlncd-smallpox.htm.
9. Chaudhri G., Panchanathan V., Bluethmann H., Karupiah G. Obligatory requirement for antibody in recovery from a primary poxvirus infection. J. Virol. 1996, 80:6339.
10. Doyle J.J., Doyle J.L. Isolation of plant DNA from fresh tissue. Focus 1990, 12:13-15.
11. Essbauer S., Pfeffera M., Meyer H. Zoonotic poxviruses. Vet. Microbiol. 2010, 140:229-236.
12. Gubser C., Smith G.L. The sequence of Camelpox virus shows it is most closely related to Variola virus, the cause of smallpox. J. Gen. Virol. 2002, 83:855-872.
13. Hanrahan J.A., Jakubowycz M., Davis B.R. A Smallpox false alarm. N. Engl. J. Med. 2003, 348:467-468.
14. Hosaka K. An easy, rapid, and inexpensive DNA extraction method, " One-Minute DNA Extraction" for PCR in potato. Am. J. Potato Res. 2004, 81:135-137.
15. Hooper J.W., Thompson E., Wilhelmsen C., Zimmerman M., Ait Ichou M., Steffen S.E., Schmaljohn C.S., Schmaljohn A.L., Jahrling P.B. Smallpox DNA vaccine protects nonhuman primates against lethal monkeypox. J. Virol. 2004, 78:4433-4443.
16. Ireland D.C., Binepal Y.S. Improved detection of capripoxvirus in biopsy samples by PCR. J. Virol. Methods 1998, 74:1-7.
17. Keb Llanes M., Gonzalez G., Chimanzanero B., Infante D. A rapid and simple method for small scale DNA extraction in Agavaceae and other tropical plants. Plant Mol. Biol. Rep. 2002, 20. 299a-299e.
18. Khanuja S.P.S., Shasany A.K., Darokar M.P., Kumar S. Rapid isolation of DNA from dry and fresh samples of plants producing large amounts of secondary metabolites and essential oil. Plant Mol. Biol. Rep. 1999, 17:1-7.
19. McLoughlin D.M., O'Brien J., McManus J.J., Gorelov A.V., Dawson K.A. A simple and effective separation and purification procedure for DNA fragments using Dodecyltrimethylammonium bromide. Bioseparation 2001, 9:307-313.
20. Mercer A.A., Schmidt A., Weber O. Poxviruses (Birkhäuser Advances in Infectious Diseases) 2007, Birkhauser, Boston.
21. Meyer H., Pfeffer M., Rziha H.-J. Sequence alterations within and downstream of the A-type inclusion protein genes allow differentiation of Orthopoxvirus species by polymerase chain reaction. J. Gen. Virol. 1994, 75:1975-1981.
22. Meyer M., Ropp S., Esposito J. Poxviruses. Methods in Molecular Medicine, vol. 12: Diagnostic Virology Protocols 1998, Humana Press, New Jersey, (Chapter 15). J. Stephenson, A. Warnes (Eds.).
23. Niedrig M., Meyer H., Panning M., Drosten C. Follow up on diagnostic proficiency of laboratories equipped to perform Orthopoxvirus detection and quantification by PCR: the second international external quality assurance study. J. Clin. Microbiol. 2006, 44:1283-1287.
24. OIE Manual of Diagnostic Tests and Vaccines for Terrestrial Animals, 2009. Camelpox. pp. 1177-1184 (Chapter 2.9.2).
25. Panning M., Asper M., Kramme S., Schmitz H., Drosten C. Rapid detection and differentiation of human pathogenic Orthopoxviruses by a fluorescence resonance energy transfer real-time PCR assay. Clin. Chem. 2004, 50:702-708.
26. Ropp S., Jin Q., Knight J. PCR strategy for identification and differentiation of Smallpox and other Orthopoxviruses. J. Clin. Microbiol. 1995, 33:2069-2076.
27. Sandvik T., Tryland M., Hansen H., Mehl R., Moens U., Olsvik Ø., Traavik T. Naturally occurring orthopoxviruses: potential for recombination with vaccine vectors. J. Clin. Microbiol. 1998, 36:2542-2547.
28. Sarwat, M., Negi, M.S., Lakshmikumaran, M., Tyagi, A.K., Das, S., Srivastava, S., 2006. A standardized protocol for genomic DNA isolation from Terminalia arjuna for genetic diversity analysis. E.J.B., 9. http://www.ejbiotechnology.info/content/vol9/issue1/full/3.
29. Sharma A.D., Gill P.K., Singh P. DNA isolation from dry and fresh samples of polysaccharide-rich plants. Plant Mol. Biol. Rep. 2002, 20. 415a-415f.
30. Sheikh Ali H.M., Khalafalla A.I., Nimir A.H. Detection of Camelpox and Vaccinia viruses by polymerase chain reaction. Trop. Anim. Health Prod. 2009, 41:1637-1641.
31. Singh R.K., Hosamani M., Balamurugan V., Satheesh C.C., Shingal K.R., Tatwarti S.B., Bambal R.G., Ramteke V., Yadav M.P. An outbreak of Buffalopox in buffalo (Bubalus bubalis) dairy herds in Aurangabad, India. Rev. Sci. Tech. Off. Int. Epiz. 2006, 25:981-987.
32. Strauss J.H., Strauss E.G. DNA-containing viruses. Viruses and Human Disease 2002, Academic Press, San Diego, CA, pp. 223-233 (Chapter 6).
33. Tel-Zur N., Abbo S., Mylaboski D., Mizrahi Y. Modified CTAB procedure for DNA isolation from Epiphytic cacti of the genus Hylocereus and Selenicerus (Cactaceae). Plant Mol. Biol. Rep. 1999, 17:249-254.
34. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
35. Trindade G.S., da Fonseca F.G., Marques J.T., Diniz S., Leite J.A., De Bodt S., Van der Peer Y., Bonjardim C.A., Ferreira P.C., Kroon E.G. Belo Horizonte virus: a vaccinia-like virus lacking the A-type inclusion body gene isolated from infected mice. J. Gen. Virol. 2004, 85:2015-2021.
36. Wernery U., Kaaden O.-R. Camel pox. Infectious Diseases in Camelids 2002, 176-185. Blackwell Science Berlin, Vienna. second ed. U. Wernery, O.-R. Kaaden (Eds.).
37. Wernery U., Meyer H., Pfeffer M. Camel pox in the United Arab Emirates and its prevention. J. Camel Pract. Res. 1997, 4:135-139.
38. Yadav S., Hosamani M., Balamurugan V., Bhanuprakash V., Singh R.K. Partial genetic characterization of viruses isolated from pox-like infection in cattle and buffaloes: evidence of Buffalopox virus circulation in Indian cows. Arch. Virol. 2010, 155:255-261.
39. Yusuf M., Muranaka S., Zaria A.A. Application of Hosaka and D.J. Kim Whatmann paper protocols for rapid isolation of cowpea DNA. Afr. J. Biotechnol. 2009, 8:6518-6520.