Whole-brain susceptibility mapping at high field: A comparison of multiple- and single-orientation methods

NeuroImage

Volumn 53, Issue 2, 2010, Pages 515-525

  Wharton, Sam ^a   Bowtell, Richard ^a  

^a UNIVERSITY OF NOTTINGHAM   (United Kingdom)

Author keywords

High field; Susceptibility mapping; Whole brain

Indexed keywords

DEOXYHEMOGLOBIN; IRON;

ADULT; ARTICLE; BLOOD VESSEL; BRAIN MAPPING; CALCULATION; COMPARATIVE STUDY; CONTROLLED STUDY; DATA ANALYSIS; GLOBUS PALLIDUS; GRAY MATTER; HUMAN; HUMAN EXPERIMENT; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGE QUALITY; MALE; NORMAL HUMAN; PHANTOM; PRIORITY JOURNAL; PROCESS OPTIMIZATION; SIGNAL NOISE RATIO; SUBSTANTIA NIGRA; THREE DIMENSIONAL IMAGING; WHITE MATTER;

ADULT; ALGORITHMS; BRAIN; BRAIN CHEMISTRY; BRAIN MAPPING; CEREBROVASCULAR CIRCULATION; GLOBUS PALLIDUS; HEMOGLOBINS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MALE; NONHEME IRON PROTEINS; PHANTOMS, IMAGING; REPRODUCIBILITY OF RESULTS; SUBSTANTIA NIGRA;

EID: 77956057878     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2010.06.070     Document Type: Article

References (29)

1. Annese J., Pitiot A., Dinov I.D., Toga A.W. A myelo-architectonic method for the structural classification of cortical areas. Neuroimage 2004, 21(1):15-26.
2. Christopher C.P., Michael A.S. LSQR: an algorithm for sparse linear equations and sparse least squares. ACM Trans. Math. Softw. 1982, 8(1):43-71.
3. de Rochefort L., Brown R., Prince M.R., Wang Y. Quantitative MR susceptibility mapping using piece-wise constant regularized inversion of the magnetic field. Magn. Reson. Med. 2008, 60(4):1003-1009.
4. de Rochefort L., Liu T., Kressler B., Liu J., Spincemaille P., Lebon V., Wu J., Wang Y. Quantitative susceptibility map reconstruction from MR phase data using bayesian regularization: validation and application to brain imaging. Magn. Reson. Med. 2010, 63(1):194-206.
5. Deistung A., Rauscher A., Sedlacik J., Stadler J., Witoszynskyj S., Reichenbach J.R. Susceptibility weighted imaging at ultra high magnetic field strengths: theoretical considerations and experimental results. Magn. Reson. Med. 2008, 60(5):1155-1168.
6. Duyn J.H., van Gelderen P., Li T.Q., de Zwart J.A., Koretsky A.P., Fukunaga M. High-field MRI of brain cortical substructure based on signal phase. Proc. Of The Natl Acad. Sci. 2007, 104(28):11796-11801.
7. Fukunga M., Li T.-Q., van Gelderen P., de Zwart J.A., Shmueli K., Yao B., Lee J., Maric D., Aranova M.A., Zhang G., Leapman R.D., Schenck J.F., Merkle H., Duyn J.H. Layer-specific variation of iron content in cerebral cortex as a source of MRI contrast. PNAS 2010, 107(8):3834-3839.
8. Haacke E.M., Xu Y.B., Cheng Y.C.N., Reichenbach J.R. Susceptibility weighted imaging (SWI). Magn. Reson. Med. 2004, 52(3):612-618.
9. Haacke E.M., Cheng N.Y., House M.J., Liu Q., Neelavalli J., Ogg R.J., Khan A., Ayaz M., Kirsch W., Obenaus A. Imaging iron stores in the brain using magnetic resonance imaging. Magn. Reson. Imaging 2005, 23(1):1-25.
10. Haacke E.M., Mittal S., Wu Z., Neelavalli J., Cheng Y.C.N. Susceptibility-weighted imaging: technical aspects and clinical applications, part 1. Am. J. Neuroradiol. 2009, 30(1):19-30.
11. Hallgren B., Sourander P. The effect of age on the non-haemin iron in the human brain. J. Neurochem. 1958, 3(1):41-51.
12. Hammond K.E., Metcalf M., Carvajal L., Okuda D.T., Srinivasan R., Vigneron D., Nelson S.J., Pelletier D. Quantitative in vivo magnetic resonance imaging of multiple sclerosis at 7 Tesla with sensitivity to iron. Ann. Neurol. 2008, 64(6):707-713.
13. Hestenes M.R., Stiefel E. Methods of conjugate gradients for solving linear systems. J. Res. Natl Bur. Stand. 1952, 49(6):409.
14. Jenkinson M. Fast, automated, N-dimensional phase-unwrapping algorithm. Magn. Reson. Med. 2003, 49(1):193-197.
15. Jenkinson M., Smith S. A global optimisation method for robust affine registration of brain images. Med. Image Anal. 2001, 5(2):143-156.
16. Koopmans P.J., Manniesing R., Niessen W.J., Viergever M.A., Barth M. MR venography of the human brain using susceptibility weighted imaging at very high field strength. Magn. Reson. Mater. Phys. Biol. Med. 2008, 21(1-2):149-158.
17. Kressler B., de Rochefort L., Liu T., Spincemaille P., Jiang Q., Wang Y. Nonlinear Regularization for Per Voxel Estimation of Magnetic Susceptibility Distributions From MRI Field Maps. Medical Imaging, IEEE Transactions on 2010, 29(2):273-281.
18. Liu T., Spincemaille P., de Rochefort L., Kressler B., Wang Y. Calculation of susceptibility through multiple orientation sampling (COSMOS): a method for conditioning the inverse problem from measured magnetic field map to susceptibility source image in MRI. Magn. Reson. Med. 2009, 61(1):196-204.
19. Liu T., de Rochefort L., Khalidov I., Prince M., Wang Y. Quantitative susceptibility mapping by regulating the field to source inverse problem with a sparse prior derived from the Maxwell Equation: validation and application to brain. 18th Annual Meeting of the ISMRM. Stockholm 2010, 705.
20. Marques J.P., Bowtell R. Application of a fourier-based method for rapid calculation of field inhomogeneity due to spatial variation of magnetic susceptibility. Concepts Magn. Reson. Part B Mag. Reson. Eng. 2005, 25B(1):65-78.
21. Mori S., Wakana S., Nagae-Poetscher L.M., van Zijl P.C.M. MRI atlas of human white matter. AJNR Am. J. Neuroradiol. 2006, 27(6):1384-1385.
22. Salomir R., De Senneville B.D., Moonen C.T.W. A fast calculation method for magnetic field inhomogeneity due to an arbitrary distribution of bulk susceptibility. Concepts Magn. Reson. Part B Magn. Reson. Eng. 2003, 19B(1):26-34.
23. Schäfer A., Wharton S., Gowland P., Bowtell R. Using magnetic field simulation to study susceptibility-related phase contrast in gradient echo MRI. Neuroimage 2009, 48(1):126-137.
24. Shmueli K., de Zwart J.A., van Gelderen P., Li T., Dodd S.J., Duyn J.H. Magnetic susceptibility mapping of brain tissue in vivo using MRI phase data. Magn. Reson. Med. 2009, 62(6):1510-1522.
25. Sofic E., Riederer P., Heinsen H., Beckmann H., Reynolds G.P., Hebenstreit G., Youdim M.B.H. Increased iron (III) and total iron content in post mortem substantia nigra of parkinsonian brain. J. Neural Transm. 1988, 74(3):199-205.
26. Stephen M.S. Fast robust automated brain extraction. Hum. Brain Mapp. 2002, 17(3):143-155.
27. Wharton S., Schäfer A., Bowtell R. Susceptibility mapping in the human brain using threshold based k-space division. Magn. Reson. Med. 2010, 63:1292-1304.
28. Xu X., Wang Q., Zhang M. Age, gender, and hemispheric differences in iron deposition in the human brain: an in vivo MRI study. Neuroimage 2008, 40(1):35-42.
29. Yao B., Li T.-Q., Gelderen P., Shmueli K., de Zwart J.A., Duyn J.H. Susceptibility contrast in high field MRI of human brain as a function of tissue iron content. Neuroimage 2009, 44(4):1259-1266.