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Volumn 16, Issue 9, 2010, Pages 1854-1863

Demonstrating polymorphic miRNA-mediated gene regulation in vivo: Application to the g+6223G→A mutation of Texel sheep

Author keywords

AGO immunoprecipitation; Allelic imbalance; microRNA target; Polymorphic miRNA mediated gene regulation

Indexed keywords

ANTIBODY; MICRORNA; MYOSTATIN; 3' UNTRANSLATED REGION; RNA INDUCED SILENCING COMPLEX;

EID: 77956027387     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2131110     Document Type: Article
Times cited : (12)

References (44)
  • 2
    • 34250843675 scopus 로고    scopus 로고
    • The micro-ribonucleic acid (miRNA) miR-206 targets the human estrogen receptor-α (ERα) and represses ERα messenger RNA and protein expression in breast cancer cell lines
    • Adams B, Furneaux H, White B. 2007. The micro-ribonucleic acid (miRNA) miR-206 targets the human estrogen receptor-α (ERα) and represses ERα messenger RNA and protein expression in breast cancer cell lines. Mol Endocrinol 21: 1132-1147.
    • (2007) Mol Endocrinol , vol.21 , pp. 1132-1147
    • Adams, B.1    Furneaux, H.2    White, B.3
  • 4
    • 37649021046 scopus 로고    scopus 로고
    • Identification of human microRNA targets from isolated argonaute protein complexes
    • Beitzinger M, Peters L, Zhu J, Kremmer E, Meister G. 2007. Identification of human microRNA targets from isolated argonaute protein complexes. RNA Biol 4: 76-84.
    • (2007) RNA Biol , vol.4 , pp. 76-84
    • Beitzinger, M.1    Peters, L.2    Zhu, J.3    Kremmer, E.4    Meister, G.5
  • 6
    • 33846283385 scopus 로고    scopus 로고
    • The evolution of gene regulation by transcription factors and microRNAs
    • DOI 10.1038/nrg1990, PII NRG1990
    • Chen K, Rajewsky N. 2007. The evolution of gene regulation by transcription factors and microRNAs. Nat Rev Genet 8: 93-103. (Pubitemid 46122839)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.2 , pp. 93-103
    • Chen, K.1    Rajewsky, N.2
  • 7
    • 67749132423 scopus 로고    scopus 로고
    • Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
    • Chi S, Zang J, Mele A, Darnell R. 2009. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 460: 479-486.
    • (2009) Nature , vol.460 , pp. 479-486
    • Chi, S.1    Zang, J.2    Mele, A.3    Darnell, R.4
  • 8
    • 54249117763 scopus 로고    scopus 로고
    • A SNP in a let-7 microRNA complementary site in the KRAS 3′ untranslated region increases non-small cell lung cancer risk
    • Chin LJ, Ratner E, Leng S, Zhai R, Nallur S, Babar I, Muller RU, Straka E, Su L, Burki EA, et al. 2008. A SNP in a let-7 microRNA complementary site in the KRAS 3′ untranslated region increases non-small cell lung cancer risk. Cancer Res 68: 8535-8540.
    • (2008) Cancer Res , vol.68 , pp. 8535-8540
    • Chin, L.J.1    Ratner, E.2    Leng, S.3    Zhai, R.4    Nallur, S.5    Babar, I.6    Muller, R.U.7    Straka, E.8    Su, L.9    Burki, E.A.10
  • 10
    • 34447521718 scopus 로고    scopus 로고
    • Isolation of microRNA targets by miRNP immunopurification
    • Easow G, Teleman A, Cohen S. 2007. Isolation of microRNA targets by miRNP immunopurification. RNA 13: 1198-1204.
    • (2007) RNA , vol.13 , pp. 1198-1204
    • Easow, G.1    Teleman, A.2    Cohen, S.3
  • 12
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman R, Farh K, Burge C, Bartel D. 2009. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19: 92-105.
    • (2009) Genome Res , vol.19 , pp. 92-105
    • Friedman, R.1    Farh, K.2    Burge, C.3    Bartel, D.4
  • 14
    • 47749154078 scopus 로고    scopus 로고
    • Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance
    • doi: 10.1371/journal.pone.0002126
    • Hendrickson D, Hogan D, Herschlag D, Ferrell J, Brown P. 2008. Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. PLoS ONE 3: e2126. doi: 10.1371/journal.pone.0002126.
    • (2008) PLoS ONE , vol.3
    • Hendrickson, D.1    Hogan, D.2    Herschlag, D.3    Ferrell, J.4    Brown, P.5
  • 15
  • 16
    • 70349293700 scopus 로고    scopus 로고
    • Immunopurification of Ago1 miRNPs selects for a distinct class of microRNA targets
    • Hong X, Hammell M, Ambros V, Cohen S. 2009. Immunopurification of Ago1 miRNPs selects for a distinct class of microRNA targets. Proc Natl Acad Sci 106: 15085-15090.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 15085-15090
    • Hong, X.1    Hammell, M.2    Ambros, V.3    Cohen, S.4
  • 17
    • 62849121357 scopus 로고    scopus 로고
    • A common polymorphism in serotonin receptor 1B mRNA moderates regulation by miR-96 and associates with aggressive human behaviors
    • Jensen K, Covault J, Conner T, Tennen H, Kranzler H, Furneaux H. 2009. A common polymorphism in serotonin receptor 1B mRNA moderates regulation by miR-96 and associates with aggressive human behaviors. Mol Psychiatry 14: 381-389.
    • (2009) Mol Psychiatry , vol.14 , pp. 381-389
    • Jensen, K.1    Covault, J.2    Conner, T.3    Tennen, H.4    Kranzler, H.5    Furneaux, H.6
  • 18
    • 52949108889 scopus 로고    scopus 로고
    • First evidence for an association of a functional variant in the microRNA-510 target site of the serotonin receptor-type 3E gene with diarrhea predominant irritable bowel syndrome
    • Kapeller J, Houghton L, Mönnikes H, Walstab J, Möller D, Bönisch H, Burwinkel B, Autschbach F, Funke B, Lasitschka F, et al. 2008. First evidence for an association of a functional variant in the microRNA-510 target site of the serotonin receptor-type 3E gene with diarrhea predominant irritable bowel syndrome. Hum Mol Genet 17: 2967-2977.
    • (2008) Hum Mol Genet , vol.17 , pp. 2967-2977
    • Kapeller, J.1    Houghton, L.2    Mönnikes, H.3    Walstab, J.4    Möller, D.5    Bönisch, H.6    Burwinkel, B.7    Autschbach, F.8    Funke, B.9    Lasitschka, F.10
  • 20
    • 66149166189 scopus 로고    scopus 로고
    • Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression
    • Kim J, Bartel D. 2009. Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression. Nat Biotechnol 27: 472-477.
    • (2009) Nat Biotechnol , vol.27 , pp. 472-477
    • Kim, J.1    Bartel, D.2
  • 24
    • 47749103305 scopus 로고    scopus 로고
    • Allele-specific targeting of hsa-miR-657 to human IGF2R creates a potential mechanism underlying the association of ACAA-insertion/deletion polymorphism with type 2 diabetes
    • Lv K, Guo Y, Zhang Y, Wang K, Jia Y, Sun S. 2008. Allele-specific targeting of hsa-miR-657 to human IGF2R creates a potential mechanism underlying the association of ACAA-insertion/deletion polymorphism with type 2 diabetes. Biochem Biophys Res Commun 374: 101-105.
    • (2008) Biochem Biophys Res Commun , vol.374 , pp. 101-105
    • Lv, K.1    Guo, Y.2    Zhang, Y.3    Wang, K.4    Jia, Y.5    Sun, S.6
  • 25
    • 0033571272 scopus 로고    scopus 로고
    • Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples
    • DOI 10.1093/nar/27.22.4436
    • Masuda N, Ohnishi T, Kawamoto S, Monden M, Okubo K. 1999. Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples. Nucleic Acids Res 27: 4436-4443. (Pubitemid 29533185)
    • (1999) Nucleic Acids Research , vol.27 , Issue.22 , pp. 4436-4443
    • Masuda, N.1    Ohnishi, T.2    Kawamoto, S.3    Monden, M.4    Okubo, K.5
  • 26
    • 0031010050 scopus 로고    scopus 로고
    • Regulation of skeletal muscle mass in mice by a new TGF-b superfamily member
    • McPherron A, Lawler A, Lee S. 1997. Regulation of skeletal muscle mass in mice by a new TGF-b superfamily member. Nature 387: 83-90.
    • (1997) Nature , vol.387 , pp. 83-90
    • McPherron, A.1    Lawler, A.2    Lee, S.3
  • 28
    • 7044272280 scopus 로고    scopus 로고
    • Evidence for reassociation of RNA-binding proteins after cell lysis: Implications for the interpretation of immunoprecipitation analyses
    • Mili S, Steitz J. 2004. Evidence for reassociation of RNA-binding proteins after cell lysis: Implications for the interpretation of immunoprecipitation analyses. RNA 10: 1692-1694.
    • (2004) RNA , vol.10 , pp. 1692-1694
    • Mili, S.1    Steitz, J.2
  • 29
    • 34548059198 scopus 로고    scopus 로고
    • A miR-24 microRNA binding-site polymorphism in dihydrofolate reductase gene leads to methotrexate resistance
    • Mishra P, Humeniuk R, Longo-Sorbello G, Banerjee D, Bertino J. 2007. A miR-24 microRNA binding-site polymorphism in dihydrofolate reductase gene leads to methotrexate resistance. Proc Natl Acad Sci 104: 13513-13518.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 13513-13518
    • Mishra, P.1    Humeniuk, R.2    Longo-Sorbello, G.3    Banerjee, D.4    Bertino, J.5
  • 31
    • 1242296375 scopus 로고    scopus 로고
    • MiRNP:mRNA association in polyribosomes in a human neuronal cell line
    • DOI 10.1261/rna.5181104
    • Nelson P, Hatzigeorgiou A, Mourelatos Z. 2004. miRNP:mRNA association in polyribosomes in a human neuronal cell line. RNA 10: 387-394. (Pubitemid 38240999)
    • (2004) RNA , vol.10 , Issue.3 , pp. 387-394
    • Nelson, P.T.1    Hatzigeorgiou, A.G.2    Mourelatos, Z.3
  • 32
    • 34748880173 scopus 로고    scopus 로고
    • A novel monoclonal antibody against human Argonaute proteins reveals unexpected characteristics of miRNAs in human blood cells
    • Nelson P, De Planell-Saguer M, Lamprinaki S, Kiriakidou M, Zhang P, O'Doherty U, Mourelatos Z. 2007. A novel monoclonal antibody against human Argonaute proteins reveals unexpected characteristics of miRNAs in human blood cells. RNA 13: 1787-1792.
    • (2007) RNA , vol.13 , pp. 1787-1792
    • Nelson, P.1    De Planell-Saguer, M.2    Lamprinaki, S.3    Kiriakidou, M.4    Zhang, P.5    O'Doherty, U.6    Mourelatos, Z.7
  • 33
    • 52949119537 scopus 로고    scopus 로고
    • MicroRNA target site polymorphisms and human disease
    • Sethupathy P, Collins F. 2008. MicroRNA target site polymorphisms and human disease. Trends Genet 24: 489-497.
    • (2008) Trends Genet , vol.24 , pp. 489-497
    • Sethupathy, P.1    Collins, F.2
  • 34
    • 34547727263 scopus 로고    scopus 로고
    • Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3′ untranslated region: A mechanism for functional single-nucleotide polymorphisms related to phenotypes
    • Sethupathy P, Borel C, Gagnebin M, Grant G, Deutsch S, Elton T, Hatzigeorgiou A, Antonarakis S. 2007. Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3′ untranslated region: A mechanism for functional single-nucleotide polymorphisms related to phenotypes. Am J Hum Genet 81: 405-413.
    • (2007) Am J Hum Genet , vol.81 , pp. 405-413
    • Sethupathy, P.1    Borel, C.2    Gagnebin, M.3    Grant, G.4    Deutsch, S.5    Elton, T.6    Hatzigeorgiou, A.7    Antonarakis, S.8
  • 37
    • 0034426034 scopus 로고    scopus 로고
    • Hot-stop PCR: A simple and general assay for linear quantitation of allele ratios
    • Uejima H, Lee M, Cui H, Feinberg A. 2000. Hot-stop PCR: A simple and general assay for linear quantitation of allele ratios. Nat Genet 25: 375-376.
    • (2000) Nat Genet , vol.25 , pp. 375-376
    • Uejima, H.1    Lee, M.2    Cui, H.3    Feinberg, A.4
  • 38
    • 33947262696 scopus 로고    scopus 로고
    • AU-Rich-Element-Mediated Upregulation of Translation by FXR1 and Argonaute 2
    • DOI 10.1016/j.cell.2007.01.038, PII S0092867407002012
    • Vasudevan S, Steitz J. 2007. AU-rich-element-mediated up-regulation of translation by FXR1 and Argonaute 2. Cell 128: 1105-1118. (Pubitemid 46427873)
    • (2007) Cell , vol.128 , Issue.6 , pp. 1105-1118
    • Vasudevan, S.1    Steitz, J.A.2
  • 39
    • 70349089243 scopus 로고    scopus 로고
    • Peripheral myelin protein 22 is regulated post-transcriptionally by miRNA-29a
    • Verrier J, Lau P, Hudson L, Murashov A, Renne R, Notterpek L. 2009. Peripheral myelin protein 22 is regulated post-transcriptionally by miRNA-29a. Glia 57: 1265-1279.
    • (2009) Glia , vol.57 , pp. 1265-1279
    • Verrier, J.1    Lau, P.2    Hudson, L.3    Murashov, A.4    Renne, R.5    Notterpek, L.6
  • 40
    • 40749145370 scopus 로고    scopus 로고
    • Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of α-synuclein
    • Wang G, van der Walt J, Mayhew G, Li Y, Züchner S, Scott W, Martin E, Vance J. 2008. Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of α-synuclein. Am J Hum Genet 82: 283-289.
    • (2008) Am J Hum Genet , vol.82 , pp. 283-289
    • Wang, G.1    Van Der Walt, J.2    Mayhew, G.3    Li, Y.4    Züchner, S.5    Scott, W.6    Martin, E.7    Vance, J.8
  • 41
    • 75149163985 scopus 로고    scopus 로고
    • Anti-Argonaute RIP-Chip shows that miRNA transfections alter global patterns of mRNA recruitment to microribonucleoprotein complexes
    • Wang W, Wilfred B, Hu Y, Stromberg A, Nelson P. 2010. Anti-Argonaute RIP-Chip shows that miRNA transfections alter global patterns of mRNA recruitment to microribonucleoprotein complexes. RNA 16: 394-404.
    • (2010) RNA , vol.16 , pp. 394-404
    • Wang, W.1    Wilfred, B.2    Hu, Y.3    Stromberg, A.4    Nelson, P.5
  • 42
    • 36249012075 scopus 로고    scopus 로고
    • Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2
    • Zhang L, Ding L, Cheung TH, Dong M-Q, Chen J, Sewell AK, Liu X, Yates JR III, Han M. 2007. Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2. Mol Cell 28: 598-613.
    • (2007) Mol Cell , vol.28 , pp. 598-613
    • Zhang, L.1    Ding, L.2    Cheung, T.H.3    Dong, M.-Q.4    Chen, J.5    Sewell, A.K.6    Liu, X.7    Yates III, J.R.8    Han, M.9
  • 43
    • 70350038073 scopus 로고    scopus 로고
    • Systematic analysis of dynamic miRNA-target interactions during C. elegans development
    • Zhang L, Hammell M, Kudlow B, Ambros V, Han M. 2009. Systematic analysis of dynamic miRNA-target interactions during C. elegans development. Development 136: 3043-3055.
    • (2009) Development , vol.136 , pp. 3043-3055
    • Zhang, L.1    Hammell, M.2    Kudlow, B.3    Ambros, V.4    Han, M.5


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