메뉴 건너뛰기




Volumn 25, Issue 4, 2010, Pages 553-568

Microbiology and the species problem

Author keywords

Microbiology; Prokaryotes; Species; Species category; Species concepts

Indexed keywords

METAPOPULATION; MICROBIOLOGY; PROKARYOTE; SPECIES CONCEPT;

EID: 77956011365     PISSN: 01693867     EISSN: 15728404     Source Type: Journal    
DOI: 10.1007/s10539-010-9211-9     Document Type: Article
Times cited : (71)

References (54)
  • 1
    • 43849089834 scopus 로고    scopus 로고
    • Microbial diversity and the genetic nature of microbial species
    • Achtman M, Wagner M (2008) Microbial diversity and the genetic nature of microbial species. Nature Rev 6: 431-440.
    • (2008) Nature Rev , vol.6 , pp. 431-440
    • Achtman, M.1    Wagner, M.2
  • 2
    • 43049101618 scopus 로고    scopus 로고
    • Lateral gene transfer challenges principles of microbial systematics
    • Bapteste E, Boucher Y (2008) Lateral gene transfer challenges principles of microbial systematics. Trends Microbiol 16: 200-2007.
    • (2008) Trends Microbiol , vol.16 , pp. 200-2007
    • Bapteste, E.1    Boucher, Y.2
  • 3
    • 65549140696 scopus 로고    scopus 로고
    • Some epistemological impacts of horizontal gene transfer on classification and microbiology
    • Bapteste E, Boucher Y (2009) Some epistemological impacts of horizontal gene transfer on classification and microbiology. Methods Mol Biol 532: 55-72.
    • (2009) Methods Mol Biol , vol.532 , pp. 55-72
    • Bapteste, E.1    Boucher, Y.2
  • 4
    • 0000845866 scopus 로고
    • Choosing among alternative "phylogenetic" species concepts
    • Baum D, Donoghue M (1995) Choosing among alternative "phylogenetic" species concepts. Syst Biol 20: 560-573.
    • (1995) Syst Biol , vol.20 , pp. 560-573
    • Baum, D.1    Donoghue, M.2
  • 5
    • 77955581520 scopus 로고
    • Speaking of species: Darwin's strategy
    • M. Ereshefsky (Ed.), Cambridge: MIT Press
    • Beatty J (1992) Speaking of species: Darwin's strategy. In: Ereshefsky M (ed) The units of evolution. MIT Press, Cambridge, pp 227-246.
    • (1992) The Units of Evolution , pp. 227-246
    • Beatty, J.1
  • 6
    • 0003356711 scopus 로고    scopus 로고
    • Homeostasis, species, and higher taxa
    • R. Wilson (Ed.), Cambridge: MIT Press
    • Boyd R (1999) Homeostasis, species, and higher taxa. In: Wilson R (ed) Species: new interdisciplinary essays. MIT Press, Cambridge, pp 141-186.
    • (1999) Species: New Interdisciplinary Essays , pp. 141-186
    • Boyd, R.1
  • 7
    • 1842842931 scopus 로고    scopus 로고
    • Species pluralism does not imply species eliminativism
    • Brigandt I (2003) Species pluralism does not imply species eliminativism. Philos Sci 70: 1305-1316.
    • (2003) Philos Sci , vol.70 , pp. 1305-1316
    • Brigandt, I.1
  • 8
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan F (2002) What are bacterial species? Annu Rev Microbiol 56: 457-487.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 457-487
    • Cohan, F.1
  • 9
    • 3042750437 scopus 로고    scopus 로고
    • Sutherland: Sinauer Associates
    • Coyne J, Orr A (2004) Speciation. Sinauer Associates, Sutherland.
    • (2004) Speciation
    • Coyne, J.1    Orr, A.2
  • 10
    • 77956010304 scopus 로고    scopus 로고
    • Darwin C (1859[1964]) On the origin of species: a facsimile of the first edition. Harvard University Press, Cambridge.
  • 11
    • 0002016726 scopus 로고    scopus 로고
    • The general lineage concept of species and the defining properties of the species category
    • R. Wilson (Ed.), Cambridge: MIT Press
    • De Queiroz K (1999) The general lineage concept of species and the defining properties of the species category. In: Wilson R (ed) Species: new interdisciplinary essays. MIT Press, Cambridge, pp 49-90.
    • (1999) Species: New Interdisciplinary Essays , pp. 49-90
    • de Queiroz, K.1
  • 12
    • 30444448342 scopus 로고    scopus 로고
    • Different species problems and their resolution
    • De Queiroz K (2005) Different species problems and their resolution. BioEssays 27: 1263-1269.
    • (2005) BioEssays , vol.27 , pp. 1263-1269
    • de Queiroz, K.1
  • 13
    • 36249004900 scopus 로고    scopus 로고
    • Species concepts and species delimitation
    • De Queiroz K (2007) Species concepts and species delimitation. Syst Biol 56: 866-879.
    • (2007) Syst Biol , vol.56 , pp. 866-879
    • de Queiroz, K.1
  • 14
    • 33847790997 scopus 로고    scopus 로고
    • Pattern pluralism and the tree of life hypothesis
    • Doolittle F, Bapteste E (2007) Pattern pluralism and the tree of life hypothesis. Proc Natl Acad Sci 104: 2043-2049.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 2043-2049
    • Doolittle, F.1    Bapteste, E.2
  • 15
    • 33845890829 scopus 로고    scopus 로고
    • Genomics and the bacterial species problem
    • Doolittle F, Papke T (2006) Genomics and the bacterial species problem. Genome Biol 7: 116. 1-116. 7.
    • (2006) Genome Biol , vol.7 , pp. 1-7
    • Doolittle, F.1    Papke, T.2
  • 16
    • 66049089612 scopus 로고    scopus 로고
    • On the origin of prokaryotic species
    • Doolittle F, Zhaxybayeva O (2009) On the origin of prokaryotic species. Genome Res 19: 744-756.
    • (2009) Genome Res , vol.19 , pp. 744-756
    • Doolittle, F.1    Zhaxybayeva, O.2
  • 17
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • Dykuizen D, Green L (1991) Recombination in Escherichia coli and the definition of biological species. J Bacteriol 173: 7257-7268.
    • (1991) J Bacteriol , vol.173 , pp. 7257-7268
    • Dykuizen, D.1    Green, L.2
  • 19
    • 0006002426 scopus 로고
    • Eliminative pluralism
    • Ereshefsky M (1992b) Eliminative pluralism. Philos Sci 59: 671-690.
    • (1992) Philos Sci , vol.59 , pp. 671-690
    • Ereshefsky, M.1
  • 20
    • 0043145064 scopus 로고    scopus 로고
    • Species pluralism and anti-realism
    • Ereshefsky M (1998) Species pluralism and anti-realism. Philos Sci 65: 103-120.
    • (1998) Philos Sci , vol.65 , pp. 103-120
    • Ereshefsky, M.1
  • 22
    • 77955580587 scopus 로고    scopus 로고
    • Ereshefsky M (2009) Darwin's solution to the species problem. Synthese. doi: 10. 1007/s11229-009-9538-4.
  • 23
    • 35348878751 scopus 로고    scopus 로고
    • Bacteria, sex, and systematics
    • Franklin L (2007) Bacteria, sex, and systematics. Philos Sci 74: 69-95.
    • (2007) Philos Sci , vol.74 , pp. 69-95
    • Franklin, L.1
  • 24
    • 33846625056 scopus 로고    scopus 로고
    • Recombination and the nature of bacterial speciation
    • Fraser C, Hange B, Spratt B (2007) Recombination and the nature of bacterial speciation. Science 315: 476-480.
    • (2007) Science , vol.315 , pp. 476-480
    • Fraser, C.1    Hange, B.2    Spratt, B.3
  • 25
    • 77956011910 scopus 로고    scopus 로고
    • Re-evaluating prokaryote species
    • Gevers D et al (2005) Re-evaluating prokaryote species. Nat Rev Microbiol 3: 1043-1047.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 1043-1047
    • Gevers, D.1
  • 26
    • 23944499633 scopus 로고    scopus 로고
    • Horizontal gene transfer, genome innovation and evolution
    • Gogarten J, Townsend J (2005) Horizontal gene transfer, genome innovation and evolution. Nat Rev Microbiol 3: 679-687.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 679-687
    • Gogarten, J.1    Townsend, J.2
  • 27
    • 34247501402 scopus 로고    scopus 로고
    • Function, homology and character individuation
    • Griffiths PE (2006) Function, homology and character individuation. Philos Sci 73: 1-25.
    • (2006) Philos Sci , vol.73 , pp. 1-25
    • Griffiths, P.E.1
  • 28
    • 35449001705 scopus 로고    scopus 로고
    • The phenomena of homology
    • Griffiths PE (2007) The phenomena of homology. Biol Philos 22: 643-658.
    • (2007) Biol Philos , vol.22 , pp. 643-658
    • Griffiths, P.E.1
  • 29
    • 22144486947 scopus 로고    scopus 로고
    • Fuzzy species among recombinogenic bacteria
    • Hanage W, Fraser C, Spratt B (2005) Fuzzy species among recombinogenic bacteria. BMC Biol 3: 6.
    • (2005) BMC Biol , vol.3 , pp. 6
    • Hanage, W.1    Fraser, C.2    Spratt, B.3
  • 30
    • 61149230995 scopus 로고    scopus 로고
    • Hull D (1965) The effect of essentialism on taxonomy: two thousand years of stasis. Br J Philos Sci 15: 314-326, 16: 1-18.
  • 31
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • Konstantinidis K, Tiedje J (2005) Genomic insights that advance the species definition for prokaryotes. PNAS 102: 2567-2572.
    • (2005) Pnas , vol.102 , pp. 2567-2572
    • Konstantinidis, K.1    Tiedje, J.2
  • 32
    • 0035448522 scopus 로고    scopus 로고
    • When does a clone deserve a name? A perspective on bacterial species based on population genetics
    • Lan R, Reeves P (2001) When does a clone deserve a name? A perspective on bacterial species based on population genetics. Trends Microbiol 9: 419-424.
    • (2001) Trends Microbiol , vol.9 , pp. 419-424
    • Lan, R.1    Reeves, P.2
  • 33
    • 0036598066 scopus 로고    scopus 로고
    • Gene transfer in bacteria: Speciation without species?
    • Lawrence J (2002) Gene transfer in bacteria: speciation without species? Theor Popul Biol 61: 449-460.
    • (2002) Theor Popul Biol , vol.61 , pp. 449-460
    • Lawrence, J.1
  • 34
    • 77955410887 scopus 로고    scopus 로고
    • Lawrence JG, Retchless A (2010) The myth of bacterial species and speciation. Biol Phil. doi: 10. 1007/s10539-010-9215-5.
  • 35
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison W (1997) Gene trees in species trees. Syst Biol 46: 523-536.
    • (1997) Syst Biol , vol.46 , pp. 523-536
    • Maddison, W.1
  • 36
    • 0036755296 scopus 로고    scopus 로고
    • On biological species, species concepts and individuation in the natural world
    • Mayden R (2002) On biological species, species concepts and individuation in the natural world. Fish Fish 3: 171-196.
    • (2002) Fish Fish , vol.3 , pp. 171-196
    • Mayden, R.1
  • 38
    • 0000532468 scopus 로고
    • Individuality, pluralism, and the phylogenetic species concept
    • Mishler B, Brandon R (1987) Individuality, pluralism, and the phylogenetic species concept. Biol Philos 2: 397-414.
    • (1987) Biol Philos , vol.2 , pp. 397-414
    • Mishler, B.1    Brandon, R.2
  • 39
    • 57249090819 scopus 로고    scopus 로고
    • Evolution without species: The case of mosaic bacteriophages
    • Morgan G, Pitts W (2008) Evolution without species: the case of mosaic bacteriophages. Br J Philos sci 59: 745-765.
    • (2008) Br J Philos Sci , vol.59 , pp. 745-765
    • Morgan, G.1    Pitts, W.2
  • 40
    • 33644749286 scopus 로고    scopus 로고
    • Recombination in thermotoga: Implications for species concepts and biogeography
    • Nesbø C, Dultek M, Doolittle F (2006) Recombination in thermotoga: implications for species concepts and biogeography. Genetics 172: 759-769.
    • (2006) Genetics , vol.172 , pp. 759-769
    • Nesbø, C.1    Dultek, M.2    Doolittle, F.3
  • 41
    • 0025591741 scopus 로고
    • An amplification of the phylogenetic species concept
    • Nixon W, Wheeler Q (1990) An amplification of the phylogenetic species concept. Cladistics 6: 211-223.
    • (1990) Cladistics , vol.6 , pp. 211-223
    • Nixon, W.1    Wheeler, Q.2
  • 42
    • 34047190388 scopus 로고    scopus 로고
    • Size doesn't matter: Towards a more inclusive philosophy of biology
    • O'Malley M, Duprè J (2007) Size doesn't matter: towards a more inclusive philosophy of biology. Biol Philos 22: 155-191.
    • (2007) Biol Philos , vol.22 , pp. 155-191
    • O'Malley, M.1    Duprè, J.2
  • 43
    • 0033170542 scopus 로고    scopus 로고
    • Microbial transfer: An ecological perspective
    • Paul J (1999) Microbial transfer: an ecological perspective. J Mol Microbiol Biotechnol 1: 45-50.
    • (1999) J Mol Microbiol Biotechnol , vol.1 , pp. 45-50
    • Paul, J.1
  • 44
    • 0038457832 scopus 로고    scopus 로고
    • Species as family resemblance concepts: The (dis-)solution of the species problem?
    • Pigliucci M (2003) Species as family resemblance concepts: the (dis-)solution of the species problem? BioEssays 25: 96-602.
    • (2003) BioEssays , vol.25 , pp. 96-602
    • Pigliucci, M.1
  • 48
    • 0035989633 scopus 로고    scopus 로고
    • Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
    • Stackebrandt E, Frederiksen W, Garrity G et al (2002) Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52: 1043-1047.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 1043-1047
    • Stackebrandt, E.1    Frederiksen, W.2    Garrity, G.3
  • 49
    • 59249089471 scopus 로고    scopus 로고
    • Organised genome dynamics in the Escherihcia coli species results in highly diverse adaptive paths
    • doi:10.1371/journal.pgen.1000344
    • Touhon M, Hoede C, Tenaillon O et al (2009) Organised genome dynamics in the Escherihcia coli species results in highly diverse adaptive paths. PLos Genetics 5: e1000344. doi: 10. 1371/journal. pgen. 1000344.
    • (2009) PLos Genetics , vol.5
    • Touhon, M.1    Hoede, C.2    Tenaillon, O.3
  • 50
    • 0000314099 scopus 로고
    • Ecological species, multispecies, and oaks
    • van Valen L (1976) Ecological species, multispecies, and oaks. Taxon 25: 233-239.
    • (1976) Taxon , vol.25 , pp. 233-239
    • van Valen, L.1
  • 51
    • 0242627658 scopus 로고    scopus 로고
    • A molecular phylogeny of enteric bacteria and implications for a bacterial species concept
    • Wertz J, Goldstone C, Gordon D, Riley M (2003) A molecular phylogeny of enteric bacteria and implications for a bacterial species concept. J Evol Biol 16: 1236-1248.
    • (2003) J Evol Biol , vol.16 , pp. 1236-1248
    • Wertz, J.1    Goldstone, C.2    Gordon, D.3    Riley, M.4
  • 53
    • 77956010428 scopus 로고    scopus 로고
    • Wilson R, Barker M, Brigandt I (2009) When traditional essentialism fails: biological natural kinds. Philosophical Topics (in press).
  • 54
    • 11144346723 scopus 로고    scopus 로고
    • The prevalence and evolution of sex in microorganisms
    • Xu J (2004) The prevalence and evolution of sex in microorganisms. Genome 47: 775-780.
    • (2004) Genome , vol.47 , pp. 775-780
    • Xu, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.