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Volumn , Issue , 2010, Pages 15-22

Protein structure prediction on a lattice model via multimodal optimization techniques

Author keywords

Absolute encoding; Crowding; Distance metric; Evolutionary algorithm; Fitness sharing; HP lattice model; Multimodal optimization; Protein structure prediction; Relative encoding

Indexed keywords

BIOINFORMATICS; CRYSTAL LATTICES; ENCODING (SYMBOLS); FORECASTING; PROTEINS; SHAPE OPTIMIZATION; SIGNAL ENCODING; STRUCTURAL OPTIMIZATION; THREE DIMENSIONAL COMPUTER GRAPHICS;

EID: 77955912478     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1830483.1830513     Document Type: Conference Paper
Times cited : (33)

References (32)
  • 2
    • 0015859467 scopus 로고
    • Principles that Govern the Folding of Protein Chains
    • C. B. Anfinsen. Principles that Govern the Folding of Protein Chains. Science, 181(4096) :223-230, 1973.
    • (1973) Science , vol.181 , Issue.4096 , pp. 223-230
    • Anfinsen, C.B.1
  • 3
    • 0034604105 scopus 로고    scopus 로고
    • A surprising simplicity to protein folding
    • May
    • D. Baker. A surprising simplicity to protein folding. Nature, 405(6782) :39-42, May 2000.
    • (2000) Nature , vol.405 , Issue.6782 , pp. 39-42
    • Baker, D.1
  • 4
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • D. Baker and A. Sali. Protein Structure Prediction and Structural Genomics. Science, 294(5540) :93-96, 2001.
    • (2001) Science , vol.294 , Issue.5540 , pp. 93-96
    • Baker, D.1    Sali, A.2
  • 10
    • 0022423920 scopus 로고
    • Theory for the folding and stability of globular proteins
    • March
    • K. A. Dill. Theory for the folding and stability of globular proteins. Biochemistry, 24(6): 1501-1509, March 1985.
    • (1985) Biochemistry , vol.24 , Issue.6 , pp. 1501-1509
    • Dill, K.A.1
  • 11
    • 0034951912 scopus 로고    scopus 로고
    • Computational protein folding: From lattice to all-atom
    • Y. Duan and P. A. Kollman. Computational protein folding: from lattice to all-atom. IBM Syst. J., 40(2):297-309, 2001.
    • (2001) IBM Syst. J. , vol.40 , Issue.2 , pp. 297-309
    • Duan, Y.1    Kollman, P.A.2
  • 12
    • 84859456405 scopus 로고    scopus 로고
    • Study of fitness landscapes for the HP model of protein structure prediction
    • Dec.
    • S. D. Flores andJ. Smith. Study of fitness landscapes for the HP model of protein structure prediction. In Evolutionary Computation, 2003. CEC 'OS. The 2003 Congress on, volume 4, pages 2338-2345, Dec. 2003.
    • (2003) Evolutionary Computation, 2003. CEC 'OS. The 2003 Congress on , vol.4 , pp. 2338-2345
    • Flores, S.D.1    Smith, J.2
  • 14
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Sep
    • L. Holm andC. Sander. Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233:123-138, Sep 1993.
    • (1993) J. Mol. Biol. , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 15
    • 34547310360 scopus 로고    scopus 로고
    • A guided genetic algorithm for protein folding prediction using 3d hydrophobic-hydrophilic model
    • Vancouver, BC
    • T. Hoque, M. Chetty, and L. S. Dooley. A guided genetic algorithm for protein folding prediction using 3d hydrophobic-hydrophilic model. In Evolutionary Computation, 2006. CEC 2006. IEEE Congress on, pages 2339-2346, Vancouver, BC, 2006.
    • (2006) Evolutionary Computation, 2006. CEC 2006. IEEE Congress on , pp. 2339-2346
    • Hoque, T.1    Chetty, M.2    Dooley, L.S.3
  • 16
    • 36749078792 scopus 로고    scopus 로고
    • Folding versus aggregation: Polypeptide conformations on competing pathways
    • Jan
    • T. R. Jahn and S. E. Radford. Folding versus aggregation: polypeptide conformations on competing pathways. Arch. Biochem. Biophys., 469:100-117, Jan 2008.
    • (2008) Arch. Biochem. Biophys. , vol.469 , pp. 100-117
    • Jahn, T.R.1    Radford, S.2
  • 21
    • 0002006297 scopus 로고
    • Are there pathways for protein folding?
    • C. Levinthal. Are there pathways for protein folding? J. Chem. Phys., 65:44-45, 1968.
    • (1968) J. Chem. Phys. , vol.65 , pp. 44-45
    • Levinthal, C.1
  • 22
    • 0029772552 scopus 로고    scopus 로고
    • Emergence of Preferred Structures in a Simple Model of Protein Folding
    • H. Li, R. Helling, C. Tang, andN. Wingreen. Emergence of Preferred Structures in a Simple Model of Protein Folding. Science, 273(5275):666-669, 1996.
    • (1996) Science , vol.273 , Issue.5275 , pp. 666-669
    • Li, H.1    Helling, R.2    Tang, C.3    Wingreen, N.4
  • 23
    • 0036715627 scopus 로고    scopus 로고
    • A species conserving genetic algorithm for multimodal function optimization
    • J. P. Li, M. E. Balazs, G. T. Parks, andP. J. Clarkson. A species conserving genetic algorithm for multimodal function optimization. Evol. Comput., 10(3):207-234, 2002.
    • (2002) Evol. Comput. , vol.10 , Issue.3 , pp. 207-234
    • Li, J.P.1    Balazs, M.E.2    Parks, G.T.3    Clarkson, P.J.4
  • 24
    • 59649085129 scopus 로고    scopus 로고
    • Evolutionary algorithms for the protein folding problem: A review and current trends
    • H. S. Lopes. Evolutionary algorithms for the protein folding problem: A review and current trends. Computational Intelligence in Biomedicine and Bioinformatics, pages 297-315, 2008.
    • (2008) Computational Intelligence in Biomedicine and Bioinformatics , pp. 297-315
    • Lopes, H.S.1
  • 25
    • 5244375166 scopus 로고
    • Simple analytical models of genetic algorithms for multimodal function optimization
    • San Francisco, CA, USA, Morgan Kaufmann Publishers Inc.
    • S. W. Mahfoud. Simple analytical models of genetic algorithms for multimodal function optimization. In Proceedings of the 5th International Conference on Genetic Algorithms, page 643, San Francisco, CA, USA, 1993. Morgan Kaufmann Publishers Inc.
    • (1993) Proceedings of the 5th International Conference on Genetic Algorithms , pp. 643
    • Mahfoud, S.W.1
  • 27
    • 49049097947 scopus 로고    scopus 로고
    • Protein folding in simplified models with estimation of distribution algorithms
    • Aug.
    • R. Santana, P. Larranaga, and J. A. Lozano. Protein folding in simplified models with estimation of distribution algorithms. IEEE Transactions on Evolutionary Computation, 12(4):418-438, Aug. 2008.
    • (2008) IEEE Transactions on Evolutionary Computation , vol.12 , Issue.4 , pp. 418-438
    • Santana, R.1    Larranaga, P.2    Lozano, J.A.3
  • 28
    • 25444462754 scopus 로고    scopus 로고
    • An ant colony optimisation algorithm for the 2d and 3d hydrophobic polar protein folding problem
    • A. Shmygelska andH. Hoos. An ant colony optimisation algorithm for the 2d and 3d hydrophobic polar protein folding problem. BMC Bioinformatics, 6(1):30, 2005.
    • (2005) BMC Bioinformatics , vol.6 , Issue.1 , pp. 30
    • Shmygelska, A.1    Hoos, H.2
  • 29
    • 1642289227 scopus 로고
    • Genetic algorithm for 3d protein folding simulations
    • San Francisco, CA, USA, Morgan Kaufmann Publishers Inc.
    • R. Unger andJ. Moult. Genetic algorithm for 3d protein folding simulations. In Proceedings of the 5th International Conference on Genetic Algorithms, pages 581-588, San Francisco, CA, USA, 1993. Morgan Kaufmann Publishers Inc.
    • (1993) Proceedings of the 5th International Conference on Genetic Algorithms , pp. 581-588
    • Unger, R.1    Moult, J.2
  • 30
    • 0027245418 scopus 로고
    • Genetic algorithms for protein folding simulations
    • May
    • R. Unger andJ. Moult. Genetic algorithms for protein folding simulations. J. Mol. Biol., 231:75-81, May 1993.
    • (1993) J. Mol. Biol. , vol.231 , pp. 75-81
    • Unger, R.1    Moult, J.2
  • 32
    • 77952402048 scopus 로고    scopus 로고
    • Effect of spatial locality on an evolutionary algorithm for multimodal optimization
    • Springer-Verlag
    • K.-C. Wong, K.-S. Leung, andM.-H. Wong. Effect of spatial locality on an evolutionary algorithm for multimodal optimization. In Evo Applications 2010, Part I, LNCS 6024. Springer-Verlag, 2010.
    • (2010) Evo Applications 2010, Part I, LNCS 6024.
    • Wong, K.-C.1    Leung, K.-S.2    Wong, M.-H.3


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