Genetic structure and distribution of Pythium aphanidermatum populations in Pennsylvania greenhouses based on analysis of AFLP and SSR markers

Mycologia

Volumn 102, Issue 4, 2010, Pages 774-784

  Lee, Seonghee ^a   Garzón, Carla D ^b   Moorman, Gary W ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b OKLAHOMA STATE UNIVERSITY   (United States)

Author keywords

Fungicide resistance; Pythium aphanidermatum

Indexed keywords

FUNGICIDE; FUNGUS; GENE FLOW; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; GENOTYPE; GREENHOUSE ECOSYSTEM; PESTICIDE RESISTANCE;

PENNSYLVANIA; UNITED STATES;

PYTHIUM; PYTHIUM APHANIDERMATUM;

ALANINE; DRUG DERIVATIVE; MEFENOXAM;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANTIFUNGAL RESISTANCE; ARTICLE; CLASSIFICATION; DRUG EFFECT; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; NUCLEOTIDE REPEAT; PHYLOGENY; PYTHIUM; UNITED STATES;

ALANINE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; DRUG RESISTANCE, FUNGAL; GENETIC VARIATION; PENNSYLVANIA; PHYLOGENY; PYTHIUM; REPETITIVE SEQUENCES, NUCLEIC ACID;

EID: 77955902328     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/09-018     Document Type: Article

References (26)

1. Amer GA, Utkhede RS. 2000. Development of formulations of biological agents for management of root rot of lettuce and cucumber. Can J Microbiol 46:809-816.
2. Ben-Yephet Y, Nelson EB. 1999. Differential suppression of damping-off caused by Pythium aphanidermatum, P. irreguare and P. myriotylum in composts at different temperatures. Plant Dis 83:356-360.
3. Boehm MJ, Hoitink HAJ. 1992. Sustenance of microbial activity in potting mixes and its impact on severity of Pythium root rot of poinsettia. Phytopathology 82:259-264.
4. Chen CQ, Belanger RR, Benhamou N, Paulitz TC. 1998. Induced systemic resistance (ISR) by Pseudomonas spp. impairs pre- and post-infection development of Pythium aphanidermatum on cucumber roots. Eur J Plant Pathol 104:877-886.
5. Chen W, Hoy JW, Schneider RW. 1991. Comparison of soluble protein electrophoresis and isozyme analysis and their potential application to Pythium systematics. Mycol Res 95:548-555.
6. Francis DM, St Clair DA. 1997. Outcrossing in the homothallic oomycete, Pythium ultimum, detected with molecular markers. Curr Genet 24:100-106.
7. Garcia AAF, Benchimol LL, Barbosa AMM, Geraldi IO, SouzaJrCL, de Souza AP. 2004. Comparison of RAPD, RFLP, AFLP and SSR markers for diversity studies in tropical maize inbred lines. Genet Mol Biol 27:579-588.
8. Garzón CD, Geiser DM, Moorman GW. 2005. Diagnosis and population analysis of Pythium species using AFLP fingerprinting. Plant Dis 89:81-89.
9. Goldberg NP, Stanghellini ME, Rasmussen SL. 1992. Filtration as a method for controlling Pythium root rot of hydroponically grown cucumber. Plant Dis 76:777-779.
10. Harvey PR, Butterworth PJ, Hawke BG, Pankhurst CE. 2001. Genetic and pathogenic variation among cereal, medic and sub-clover isolates of Pythium irregulare. Mycol Res 105:85-93.
11. Herrero ML, Klemsdal SS. 1998. Identification of Pythium aphanidermatum using the RAPD technique. Mycol Res 102:136-140.
12. Heungens K, Parke JL. 2000. Zoospore homing and infection events: effects of the biocontrol bacterium Burkholderia cepacia AMMDR1 on two oomycete pathogens of pea (Pisum sativum L.). Appl Environ Microbiol 66:5192-5200.
13. Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sala F, van de Wiel C, Bredemeijer G, Vosman B, Matthes M, Daly A, Brettschneider R, Bettini P, Buiatti M, Maestri E, Malcevschi A, Marmiroli N, Aert R, Volckaert G, Rueda J, Linacero R, Vazquez A, Karp A. 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol Breed 3:381-390.
14. Jorde PE, PalmS, Ryman N. 1999. Estimating genetic drift and effective population size from temporal shifts in dominant gene marker frequencies. Mol Ecol 8:1171-1178.
15. Lee SH, Moorman GW. 2008. Identification and characterization of simple sequence repeat markers for Pythium aphanidermatum, P. cryptoirregulare and P. irregulare and the potential use in Pythium population genetics. Curr Genet 53:81-93.
16. Lévesque CA, Harlton CE, de Cock AWAM. 1998. Identification of some oomycetes by reverse dot blot hybridization. Phytopathology 88:213-222.
17. Liu K, Muse SV. 2005. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128-2129.
18. Mansoori B, Jaliani NK. 1996. Control of soilborne pathogens of watermelon by solar heating. Crop Protect 15:423-424.
19. Moorman GW, Kang S, Geiser DM, Kim SH. 2002. Identification and characterization of Pythium species associated with greenhouse floral crops in Pennsylvania. Plant Dis 86:1227-1231.
20. Nei M. 1973. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321-3323.
21. Queller DC, Strassman JE, Hughes CR. 1993. Microsatellites and kinship. Trends Ecol Evol 8:285-288.
22. Roberts BW, Bruton BD, Edelson JV, Lu W, Perkins Veazie PM, Shrefler JW, Stanghellini ME. 2005. Watermelon seedling mortality associated with Pythium aphanidermatum. HortScience 40:873.
23. Sanders PL. 1984. Failure of metalaxyl to control Pythium blight on Turf grass in Pennsylvania. Plant Dis 68:776-777.
24. Sutton JC, Sopher CR, Owen-Going TN, Liu W, Hall JC, Benchimol RL. 2006. Etiology and epidemiology of Pythium root rot in hydroponic crops: current knowledge and perspectives. Summa Phytopathol 32:307-321.
25. van der Plaats-Niterink AJ. 1981. Monograph of the genus Pythium. Studies in Mycology. Baarn, Netherlands: Centraalbureau voor Schimmelcultures. 242 p.
26. Vos P, Hogers R, Bleeker M, Reijans M, Vandelee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M. 1995. AFLP-a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414.