Analysis of the genetic variation in Mycobacterium tuberculosis strains by multiple genome alignments

BMC Research Notes

Volumn 1, Issue , 2008, Pages

  Cubillos Ruiz, Andrés ^a   Morales, Juan ^b   Zambrano, María Mercedes ^a  

^a Genomics and Evolution of Communities of Environmental Microorganisms   (Colombia)

^b Ingenian Software ^*  (Colombia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); MYCOBACTERIUM TUBERCULOSIS;

EID: 77955822693     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-1-110     Document Type: Article

References (24)

1. Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis. MC Gutierrez S Brisse R Brosch M Fabre B Omais M Marmiesse P Supply V Vincent, PLoS Pathog 2005 1 1 5 16201017 10.1371/journal.ppat.0010005
2. The microbial pan-genome. D Medini C Donati H Tettelin V Masignani R Rappuoli, Curr Opin Genet Dev 2005 15 6 589 594 10.1016/j.gde.2005.09.006 16185861
3. Hypervirulent mutant of Mycobacterium tuberculosis resulting from disruption of the mce1 operon. N Shimono L Morici N Casali S Cantrell B Sidders S Ehrt LW Riley, Proc Natl Acad Sci USA 2003 100 26 15918 15923 14663145 10.1073/pnas.2433882100 (Pubitemid 38021090)
4. The W-Beijing lineage of Mycobacterium tuberculosis overproduces triglycerides and has the DosR dormancy regulon constitutively upregulated. MB Reed S Gagneux K Deriemer PM Small CE Barry 3rd, J Bacteriol 2007 189 7 2583 2589 17237171 10.1128/JB.01670-06 (Pubitemid 46556038)
5. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. ST Cole R Brosch J Parkhill T Garnier C Churcher D Harris SV Gordon K Eiglmeier S Gas CE Barry 3rd, et al. Nature 1998 393 6685 537 544 10.1038/31159 9634230
6. An outbreak involving extensive transmission of a virulent strain of Mycobacterium tuberculosis. SE Valway MP Sanchez TF Shinnick I Orme T Agerton D Hoy JS Jones H Westmoreland IM Onorato, N Engl J Med 1998 338 10 633 639 10.1056/NEJM199803053381001 9486991
7. Molecular characteristics and global spread of Mycobacterium tuberculosis with a western cape F11 genotype. TC Victor PE de Haas AM Jordaan GD van der Spuy M Richardson D van Soolingen PD van Helden R Warren, J Clin Microbiol 2004 42 2 769 772 14766851 10.1128/JCM.42.2.769-772.2004 (Pubitemid 38222660)
8. Widespread dissemination of a drug-susceptible strain of Mycobacterium tuberculosis. CR Friedman GC Quinn BN Kreiswirth DC Perlman N Salomon N Schluger M Lutfey J Berger N Poltoratskaia LW Riley, J Infect Dis 1997 176 2 478 484 9237715 (Pubitemid 27328772)
9. A marked difference in pathogenesis and immune response induced by different Mycobacterium tuberculosis genotypes. B Lopez D Aguilar H Orozco M Burger C Espitia V Ritacco L Barrera K Kremer R Hernandez-Pando K Huygen, et al. Clin Exp Immunol 2003 133 1 30 37 12823275 10.1046/j.1365-2249.2003.02171.x (Pubitemid 36791939)
10. Mauve: multiple alignment of conserved genomic sequence with rearrangements. AC Darling B Mau FR Blattner NT Perna, Genome Res 2004 14 7 1394 1403 15231754 10.1101/gr.2289704 (Pubitemid 39029237)
11. Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: resolution of genetic relationships among closely related microbial strains. MM Gutacker JC Smoot CA Migliaccio SM Ricklefs S Hua DV Cousins EA Graviss E Shashkina BN Kreiswirth JM Musser, Genetics 2002 162 4 1533 1543 12524330
12. Functional and evolutionary genomics of Mycobacterium tuberculosis: insights from genomic deletions in 100 strains. AG Tsolaki AE Hirsh K DeRiemer JA Enciso MZ Wong M Hannan YO Goguet de la Salmoniere K Aman M Kato-Maeda PM Small, Proc Natl Acad Sci USA 2004 101 14 4865 4870 15024109 10.1073/pnas.0305634101 (Pubitemid 38469169)
13. Microbial genome evolution: sources of variability. A Mira L Klasson SG Andersson, Curr Opin Microbiol 2002 5 5 506 512 10.1016/S1369-5274(02)00358-2 12354559
14. Genes required for mycobacterial growth defined by high density mutagenesis. CM Sassetti DH Boyd EJ Rubin, Mol Microbiol 2003 48 1 77 84 10.1046/j.1365-2958.2003.03425.x 12657046
15. Microsatellite polymorphism across the M. tuberculosis and M. bovis genomes: implications on genome evolution and plasticity. VB Sreenu P Kumar J Nagaraju HA Nagarajaram, BMC Genomics 2006 7 78 16603092 10.1186/1471-2164-7-78 (Pubitemid 44080931)
16. The "domino theory" of gene death: gradual and mass gene extinction events in three lineages of obligate symbiotic bacterial pathogens. T Dagan R Blekhman D Graur, Mol Biol Evol 2006 23 2 310 316 10.1093/molbev/msj036 16237210
17. Are the PE-PGRS proteins of Mycobacterium tuberculosis variable surface antigens? S Banu N Honore B Saint-Joanis D Philpott MC Prevost ST Cole, Mol Microbiol 2002 44 1 9 19 10.1046/j.1365-2958.2002.02813.x 11967065
18. Comparative immune response to PE and PE-PGRS antigens of Mycobacterium tuberculosis. G Delogu MJ Brennan, Infect Immun 2001 69 9 5606 5611 11500435 10.1128/IAI.69.9.5606-5611.2001 (Pubitemid 32786497)
19. Mycobacterium tuberculosis secretory proteins CFP-10, ESAT-6 and the CFP10:ESAT6 complex inhibit lipopolysaccharide-induced NF-kappaB transactivation by downregulation of reactive oxidative species (ROS) production. N Ganguly PH Giang C Gupta SK Basu I Siddiqui DM Salunke P Sharma, Immunol Cell Biol 2007 17909563
20. IS6110 functions as a mobile, monocyte-activated promoter in Mycobacterium tuberculosis. H Safi PF Barnes DL Lakey H Shams B Samten R Vankayalapati ST Howard, Mol Microbiol 2004 52 4 999 1012 10.1111/j.1365-2958. 2004.04037.x 15130120
21. The control of copy number of IS6110 in Mycobacterium tuberculosis. MM Tanaka NA Rosenberg PM Small, Mol Biol Evol 2004 21 12 2195 2201 10.1093/molbev/msh234 15317877
22. Micros for microbes: non-coding regulatory RNAs in bacteria. S Gottesman, Trends Genet 2005 21 7 399 404 10.1016/j.tig.2005.05.008 15913835
23. Genomic deletions classify the Beijing/W strains as a distinct genetic lineage of Mycobacterium tuberculosis. AG Tsolaki S Gagneux AS Pym YO Goguet de la Salmoniere BN Kreiswirth D Van Soolingen PM Small, J Clin Microbiol 2005 43 7 3185 3191 16000433 10.1128/JCM.43.7.3185-3191.2005 (Pubitemid 40981321)
24. Stable association between strains of Mycobacterium tuberculosis and their human host populations. AE Hirsh AG Tsolaki K DeRiemer MW Feldman PM Small, Proc Natl Acad Sci USA 2004 101 14 4871 4876 15041743 10.1073/pnas.0305627101 (Pubitemid 38469170)