메뉴 건너뛰기




Volumn , Issue , 2010, Pages 211-233

Carbohydrate structure databases

Author keywords

[No Author keywords available]

Indexed keywords


EID: 77955714063     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-0-12-373600-0.00010-X     Document Type: Chapter
Times cited : (3)

References (65)
  • 1
    • 53249130657 scopus 로고    scopus 로고
    • Characterizing the glycome of the mammalian immune system
    • Haslam SM, Julien S, Burchell JM, et al. Characterizing the glycome of the mammalian immune system. Immunol Cell Biol 2008, 86:564-573.
    • (2008) Immunol Cell Biol , vol.86 , pp. 564-573
    • Haslam, S.M.1    Julien, S.2    Burchell, J.M.3
  • 2
    • 33749041103 scopus 로고    scopus 로고
    • Mass spectrometric analysis of N- and O-glycosylation of tissues and cells
    • Haslam SM, North SJ, Dell A Mass spectrometric analysis of N- and O-glycosylation of tissues and cells. Curr Opin Struct Biol 2006, 16:584-591.
    • (2006) Curr Opin Struct Biol , vol.16 , pp. 584-591
    • Haslam, S.M.1    North, S.J.2    Dell, A.3
  • 3
    • 33845417633 scopus 로고    scopus 로고
    • Strategies for analysis of glycoprotein glycosylation
    • Geyer H, Geyer R Strategies for analysis of glycoprotein glycosylation. Biochim Biophys Acta 2006, 1764:1853-1869.
    • (2006) Biochim Biophys Acta , vol.1764 , pp. 1853-1869
    • Geyer, H.1    Geyer, R.2
  • 4
    • 48849115688 scopus 로고    scopus 로고
    • Determining the structure of glycan moieties by mass spectrometry.
    • Chapter 12:Unit 12 17.
    • Harvey DJ, Dwek RA, Rudd PM. Determining the structure of glycan moieties by mass spectrometry. Curr Protoc Protein Sci 2006;Chapter 12:Unit 12 17.
    • (2006) Curr Protoc Protein Sci
    • Harvey, D.J.1    Dwek, R.A.2    Rudd, P.M.3
  • 5
    • 38149046602 scopus 로고    scopus 로고
    • Frontiers in glycomics: Bioinformatics and biomarkers in disease. An NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11-13, 2006)
    • Packer NH, von der Lieth C-W, Aoki-Kinoshita KF, Lebrilla CB, Paulson JC, Raman R, Rudd P, Sasisekharan R, Taniguchi N, York WS Frontiers in glycomics: Bioinformatics and biomarkers in disease. An NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11-13, 2006). Proteomics 2008, 8:8-20.
    • (2008) Proteomics , vol.8 , pp. 8-20
    • Packer, N.H.1    von der Lieth, C.-W.2    Aoki-Kinoshita, K.F.3    Lebrilla, C.B.4    Paulson, J.C.5    Raman, R.6    Rudd, P.7    Sasisekharan, R.8    Taniguchi, N.9    York, W.S.10
  • 7
    • 33646108830 scopus 로고    scopus 로고
    • The role of informatics in glycobiology research with special emphasis on automatic interpretation of MS spectra
    • von der Lieth C-W, Lutteke T, Frank M The role of informatics in glycobiology research with special emphasis on automatic interpretation of MS spectra. Biochim Biophys Acta 2006, 1760:568-577.
    • (2006) Biochim Biophys Acta , vol.1760 , pp. 568-577
    • von der Lieth, C.-W.1    Lutteke, T.2    Frank, M.3
  • 8
  • 9
    • 33750524035 scopus 로고    scopus 로고
    • Linking publication, gene and protein data
    • Kersey P, Apweiler R Linking publication, gene and protein data. Nat Cell Biol 2006, 8:1183-1189.
    • (2006) Nat Cell Biol , vol.8 , pp. 1183-1189
    • Kersey, P.1    Apweiler, R.2
  • 11
    • 33746113370 scopus 로고    scopus 로고
    • Bioinformatics database infrastructure for biotechnology research
    • Whitfield EJ, Pruess M, Apweiler R Bioinformatics database infrastructure for biotechnology research. J Biotechnol 2006, 124:629-639.
    • (2006) J Biotechnol , vol.124 , pp. 629-639
    • Whitfield, E.J.1    Pruess, M.2    Apweiler, R.3
  • 12
    • 42449105845 scopus 로고    scopus 로고
    • In silico characterization of proteins: UniProt, InterPro and Integr8
    • Mulder NJ, Kersey P, Pruess M, Apweiler R In silico characterization of proteins: UniProt, InterPro and Integr8. Mol Biotechnol 2008, 38:165-177.
    • (2008) Mol Biotechnol , vol.38 , pp. 165-177
    • Mulder, N.J.1    Kersey, P.2    Pruess, M.3    Apweiler, R.4
  • 13
    • 74849083955 scopus 로고    scopus 로고
    • Databases and Informatics for Glycobiology and Glycomics
    • Elsevier, New York, J.P. Kamerling (Ed.)
    • von der Lieth C-W Databases and Informatics for Glycobiology and Glycomics. Comprehensive Glycoscience-from Chemistry to Systems Biology 2007, 329-346. Elsevier, New York. J.P. Kamerling (Ed.).
    • (2007) Comprehensive Glycoscience-from Chemistry to Systems Biology , pp. 329-346
    • von der Lieth, C.-W.1
  • 14
    • 58849120468 scopus 로고    scopus 로고
    • Web resources for the glycoscientist
    • Lutteke T Web resources for the glycoscientist. Chembiochem 2008, 9:2155-2160.
    • (2008) Chembiochem , vol.9 , pp. 2155-2160
    • Lutteke, T.1
  • 15
    • 33846115518 scopus 로고    scopus 로고
    • Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de
    • Toukach P, Joshi HJ, Ranzinger R, Knirel Y, von der Lieth CW Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de. Nucleic Acids Res 2007, 35:D280-D286.
    • (2007) Nucleic Acids Res , vol.35
    • Toukach, P.1    Joshi, H.J.2    Ranzinger, R.3    Knirel, Y.4    von der Lieth, C.W.5
  • 17
    • 37849189530 scopus 로고    scopus 로고
    • Nomenclature of carbohydrates (recommendations 1996)
    • McNaught AD Nomenclature of carbohydrates (recommendations 1996). Adv Carbohydr Chem Biochem 1997, 52:43-177.
    • (1997) Adv Carbohydr Chem Biochem , vol.52 , pp. 43-177
    • McNaught, A.D.1
  • 18
    • 28444485613 scopus 로고    scopus 로고
    • GLYDE-an expressive XML standard for the representation of glycan structure
    • Sahoo SS, Thomas C, Sheth A, Henson C, York WS GLYDE-an expressive XML standard for the representation of glycan structure. Carbohydr Res 2005, 340:2802-2807.
    • (2005) Carbohydr Res , vol.340 , pp. 2802-2807
    • Sahoo, S.S.1    Thomas, C.2    Sheth, A.3    Henson, C.4    York, W.S.5
  • 22
    • 77955713393 scopus 로고    scopus 로고
    • New database of bacterial carbohydrate structures
    • Toukach FV, Knirel YA New database of bacterial carbohydrate structures. Glycoconjugate J 2005, 22:216-217.
    • (2005) Glycoconjugate J , vol.22 , pp. 216-217
    • Toukach, F.V.1    Knirel, Y.A.2
  • 24
    • 0036586710 scopus 로고    scopus 로고
    • A novel Linear Code((R)) nomenclature for complex carbohydrates
    • Banin E, Neuberger Y, Altshuler Y, et al. A novel Linear Code((R)) nomenclature for complex carbohydrates. TIGG 2002, 14:127-137.
    • (2002) TIGG , vol.14 , pp. 127-137
    • Banin, E.1    Neuberger, Y.2    Altshuler, Y.3
  • 28
    • 0034773106 scopus 로고    scopus 로고
    • LINUCS: linear notation for unique description of carbohydrate sequences
    • Bohne-Lang A, Lang E, Forster T, von der Lieth C-W LINUCS: linear notation for unique description of carbohydrate sequences. Carbohydr Res 2001, 336:1-11.
    • (2001) Carbohydr Res , vol.336 , pp. 1-11
    • Bohne-Lang, A.1    Lang, E.2    Forster, T.3    von der Lieth, C.-W.4
  • 29
    • 13444283836 scopus 로고    scopus 로고
    • Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PBD
    • Lutteke T, Frank M, von der Lieth C-W Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PBD. Nucleic Acids Res 2005, 33:D242-D246.
    • (2005) Nucleic Acids Res , vol.33
    • Lutteke, T.1    Frank, M.2    von der Lieth, C.-W.3
  • 30
    • 33646853740 scopus 로고    scopus 로고
    • The protein data bank (PDB) as a versatile resource for glycobiology and glycomics
    • Lutteke T, von der Lieth C-W The protein data bank (PDB) as a versatile resource for glycobiology and glycomics. Biocatalysis and Biotransformation 2006, 24:147-155.
    • (2006) Biocatalysis and Biotransformation , vol.24 , pp. 147-155
    • Lutteke, T.1    von der Lieth, C.-W.2
  • 31
    • 33846036096 scopus 로고    scopus 로고
    • The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data
    • Berman H, Henrick K, Nakamura H, Markley JL The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res 2007, 35:D301-D303.
    • (2007) Nucleic Acids Res , vol.35
    • Berman, H.1    Henrick, K.2    Nakamura, H.3    Markley, J.L.4
  • 34
  • 36
    • 33749186969 scopus 로고    scopus 로고
    • GlycoEpitope: the integrated database of carbohydrate antigens and antibodies
    • Kawasaki T, Nakao H, Takahashi E, Tominaga T GlycoEpitope: the integrated database of carbohydrate antigens and antibodies. TIGG 2006, 18:267-272.
    • (2006) TIGG , vol.18 , pp. 267-272
    • Kawasaki, T.1    Nakao, H.2    Takahashi, E.3    Tominaga, T.4
  • 37
    • 5444270971 scopus 로고    scopus 로고
    • Construction of a human glycogene library and comprehensive functional analysis
    • Narimatsu H Construction of a human glycogene library and comprehensive functional analysis. Glycoconjugate J 2004, 21:17-24.
    • (2004) Glycoconjugate J , vol.21 , pp. 17-24
    • Narimatsu, H.1
  • 39
    • 84882495917 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt) 2009. Nucleic Acids Res 2008.
    • The Universal Protein Resource (UniProt) 2009. Nucleic Acids Res 2008.
  • 40
    • 0035259539 scopus 로고    scopus 로고
    • Annotation of glycoproteins in the SWISS-PROT database
    • Jung E, Veuthey AL, Gasteiger E, Bairoch A Annotation of glycoproteins in the SWISS-PROT database. Proteomics 2001, 1:262-268.
    • (2001) Proteomics , vol.1 , pp. 262-268
    • Jung, E.1    Veuthey, A.L.2    Gasteiger, E.3    Bairoch, A.4
  • 43
    • 1542328860 scopus 로고    scopus 로고
    • Data mining the protein data bank: automatic detection and assignment of carbohydrate structures
    • Lutteke T, Frank M, von der Lieth C-W Data mining the protein data bank: automatic detection and assignment of carbohydrate structures. Carbohydr Res 2004, 339:1015-1020.
    • (2004) Carbohydr Res , vol.339 , pp. 1015-1020
    • Lutteke, T.1    Frank, M.2    von der Lieth, C.-W.3
  • 44
    • 38549146892 scopus 로고    scopus 로고
    • Glycoconjugate Data Bank: Structures-an annotated glycan structure database and N-glycan primary structure verification service
    • Nakahara T, Hashimoto R, Nakagawa H, Monde K, Miura N, Nishimura S Glycoconjugate Data Bank: Structures-an annotated glycan structure database and N-glycan primary structure verification service. Nucleic Acids Res 2008, 36:D368-D371.
    • (2008) Nucleic Acids Res , vol.36
    • Nakahara, T.1    Hashimoto, R.2    Nakagawa, H.3    Monde, K.4    Miura, N.5    Nishimura, S.6
  • 45
    • 34247558164 scopus 로고    scopus 로고
    • Building meaningful models of glycoproteins
    • discussion 354-355
    • Crispin M, Stuart DI, Jones EY Building meaningful models of glycoproteins. Nat Struct Mol Biol 2007, 14:354. discussion 354-355.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 354
    • Crispin, M.1    Stuart, D.I.2    Jones, E.Y.3
  • 46
    • 34848927484 scopus 로고    scopus 로고
    • The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures
    • Ceroni A, Dell A, Haslam SM The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures. Source Code Biol Med 2007, 2:3.
    • (2007) Source Code Biol Med , vol.2 , pp. 3
    • Ceroni, A.1    Dell, A.2    Haslam, S.M.3
  • 48
    • 45549094069 scopus 로고    scopus 로고
    • GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans
    • Ceroni A, Maass K, Geyer H, Geyer R, Dell A, Haslam SM GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans. J Proteome Res 2008, 7:1650-1659.
    • (2008) J Proteome Res , vol.7 , pp. 1650-1659
    • Ceroni, A.1    Maass, K.2    Geyer, H.3    Geyer, R.4    Dell, A.5    Haslam, S.M.6
  • 49
    • 0026251757 scopus 로고
    • Casper-a Computer-Program Used for Structural-Analysis of Carbohydrates
    • Jansson PE, Kenne L, Widmalm G Casper-a Computer-Program Used for Structural-Analysis of Carbohydrates. J Chem Inf Comput Sci 1991, 31:508-516.
    • (1991) J Chem Inf Comput Sci , vol.31 , pp. 508-516
    • Jansson, P.E.1    Kenne, L.2    Widmalm, G.3
  • 50
    • 33747846574 scopus 로고    scopus 로고
    • GlyNest and CASPER: two independent approaches to estimate 1H and 13C NMR shifts of glycans available through a common web-interface
    • Loss A, Stenutz R, Schwarzer E, von der Lieth C-W GlyNest and CASPER: two independent approaches to estimate 1H and 13C NMR shifts of glycans available through a common web-interface. Nucleic Acids Res 2006, 34:W733-W737.
    • (2006) Nucleic Acids Res , vol.34
    • Loss, A.1    Stenutz, R.2    Schwarzer, E.3    von der Lieth, C.-W.4
  • 51
    • 52249120592 scopus 로고    scopus 로고
    • Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): Characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans
    • Herget S, Toukach PV, Ranzinger R, Hull WE, Knirel YA, von der Lieth CW Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): Characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans. BMC Struct Biol 2008, 8:35.
    • (2008) BMC Struct Biol , vol.8 , pp. 35
    • Herget, S.1    Toukach, P.V.2    Ranzinger, R.3    Hull, W.E.4    Knirel, Y.A.5    von der Lieth, C.W.6
  • 52
    • 35948955219 scopus 로고    scopus 로고
    • Exploring the structural diversity of mammalian carbohydrates ("glycospace") by statistical databank analysis
    • Werz DB, Ranzinger R, Herget S, Adibekian A, von der Lieth CW, Seeberger PH Exploring the structural diversity of mammalian carbohydrates ("glycospace") by statistical databank analysis. ACS Chem Biol 2007, 2:685-691.
    • (2007) ACS Chem Biol , vol.2 , pp. 685-691
    • Werz, D.B.1    Ranzinger, R.2    Herget, S.3    Adibekian, A.4    von der Lieth, C.W.5    Seeberger, P.H.6
  • 53
    • 0030540967 scopus 로고    scopus 로고
    • Molecular mimicry of host structures by bacterial lipopolysaccharides and its contribution to disease
    • Moran AP, Prendergast MM, Appelmelk BJ Molecular mimicry of host structures by bacterial lipopolysaccharides and its contribution to disease. FEMS Immunol Med Microbiol 1996, 16:105-115.
    • (1996) FEMS Immunol Med Microbiol , vol.16 , pp. 105-115
    • Moran, A.P.1    Prendergast, M.M.2    Appelmelk, B.J.3
  • 54
    • 27144524953 scopus 로고    scopus 로고
    • Carbohydrate mimicry: a new paradigm of autoimmune diseases
    • Yuki N Carbohydrate mimicry: a new paradigm of autoimmune diseases. Curr Opin Immunol 2005, 17:577-582.
    • (2005) Curr Opin Immunol , vol.17 , pp. 577-582
    • Yuki, N.1
  • 55
    • 45049086147 scopus 로고    scopus 로고
    • Relevance of fucosylation and Lewis antigen expression in the bacterial gastroduodenal pathogen Helicobacter pylori
    • Moran AP Relevance of fucosylation and Lewis antigen expression in the bacterial gastroduodenal pathogen Helicobacter pylori. Carbohydr Res 2008, 343:1952-1965.
    • (2008) Carbohydr Res , vol.343 , pp. 1952-1965
    • Moran, A.P.1
  • 57
    • 84882542410 scopus 로고    scopus 로고
    • Jmol: an open-source Java viewer for chemical structures in 3D.
    • Jmol: an open-source Java viewer for chemical structures in 3D. http://www.jmol.org/.
  • 58
    • 0027996135 scopus 로고
    • Structure and Energetics of Protein Carbohydrate Complexes
    • Toone EJ Structure and Energetics of Protein Carbohydrate Complexes. Curr Opin Struct Biol 1994, 4:719-728.
    • (1994) Curr Opin Struct Biol , vol.4 , pp. 719-728
    • Toone, E.J.1
  • 59
    • 0032370218 scopus 로고    scopus 로고
    • NMR studies of carbohydrate-protein interactions in solution
    • Poveda A, Jimenez-Barbero J NMR studies of carbohydrate-protein interactions in solution. Chem Soc Rev 1998, 27:133-143.
    • (1998) Chem Soc Rev , vol.27 , pp. 133-143
    • Poveda, A.1    Jimenez-Barbero, J.2
  • 61
    • 19744371399 scopus 로고    scopus 로고
    • Molecular recognition of saccharides by proteins. Insights on the origin of the carbohydrate-aromatic interactions
    • del Carmen Fernandez-Alonso M, Canada FJ, Jimenez-Barbero J, Cuevas G Molecular recognition of saccharides by proteins. Insights on the origin of the carbohydrate-aromatic interactions. J Am Chem Soc 2005, 127:7379-7386.
    • (2005) J Am Chem Soc , vol.127 , pp. 7379-7386
    • del Carmen Fernandez-Alonso, M.1    Canada, F.J.2    Jimenez-Barbero, J.3    Cuevas, G.4
  • 62
    • 34447118190 scopus 로고    scopus 로고
    • Scavenger receptor C-type lectin binds to the leukocyte cell surface glycan Lewis(x) by a novel mechanism
    • Feinberg H, Taylor ME, Weis WI Scavenger receptor C-type lectin binds to the leukocyte cell surface glycan Lewis(x) by a novel mechanism. J Biol Chem 2007, 282:17250-17258.
    • (2007) J Biol Chem , vol.282 , pp. 17250-17258
    • Feinberg, H.1    Taylor, M.E.2    Weis, W.I.3
  • 63
    • 33846115011 scopus 로고    scopus 로고
    • GlycoMapsDB: a database of the accessible conformational space of glycosidic linkages
    • Frank M, Lutteke T, von der Lieth C-W GlycoMapsDB: a database of the accessible conformational space of glycosidic linkages. Nucleic Acids Res 2007, 35:287-290.
    • (2007) Nucleic Acids Res , vol.35 , pp. 287-290
    • Frank, M.1    Lutteke, T.2    von der Lieth, C.-W.3
  • 64
    • 0035170507 scopus 로고    scopus 로고
    • GlycoSuiteDB: a new curated relational database of glycoprotein glycan structures and their biological sources
    • Cooper CA, Harrison MJ, Wilkins MR, Packer NH GlycoSuiteDB: a new curated relational database of glycoprotein glycan structures and their biological sources. Nucleic Acids Res 2001, 29:332-335.
    • (2001) Nucleic Acids Res , vol.29 , pp. 332-335
    • Cooper, C.A.1    Harrison, M.J.2    Wilkins, M.R.3    Packer, N.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.