Diagnostic accuracy of an allele-specific reverse transcriptase-PCR assay targeting the H275Y oseltamivir resistant mutation in 2009 pandemic influenza A/H1N1 virus

Journal of Clinical Virology

Volumn 49, Issue 1, 2010, Pages 21-25

  Renaud, C ^a   Kuypers, J ^a,b   Corey, L ^a,b  

^a Fred Hutchinson Cancer Research Center   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Diagnostic; H275Y; Influenza; Oseltamivir resistant; PCR

Indexed keywords

OSELTAMIVIR;

ALLELE SPECIFIC REAL TIME REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ALLELIC DISCRIMINATION ASSAY; ANTIVIRAL RESISTANCE; ARTICLE; BIOASSAY; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; GENE MUTATION; GENOTYPE; HUMAN; INFLUENZA A (H1N1); INFLUENZA VIRUS A H1N1; MAJOR CLINICAL STUDY; MUTANT; PANDEMIC INFLUENZA; PRIORITY JOURNAL; PYROSEQUENCING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS LOAD; WILD TYPE;

EID: 77955654080     PISSN: 13866532     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jcv.2010.06.019     Document Type: Article

References (28)

1. Rungrotmongkol T., Intharathep P., Malaisree M., Nunthaboot N., Kaiyawet N., Sompornpisut P., et al. Susceptibility of antiviral drugs against 2009 influenza A (H1N1) virus. Biochem Biophys Res Commun 2009, 385(3):390-394.
2. Chan PA, Connell NT, Gabonay AM, Westley B, Larkin JM, Larosa SP, et al. Oseltamivir resistant 2009-2010 pandemic influenza A (H1N1) in an immunocompromised patient. Clin Microbiol Infect 2010; online publication.
3. Boibieux A. Oseltamivir-resistant influenza A pandemic (H1N1) 2009 virus. Ann Fr Anesth Reanim 2010, 29(2):85-86.
4. Speers D.J., Williams S.H., Pinder M., Moody H.R., Hurt A.C., Smith D.W. Oseltamivir-resistant pandemic (H1N1) 2009 influenza in a severely ill patient: the first Australian case. Med J Aust 2010, 192(3):166-168.
5. Le Q.M., Wertheim H.F., Tran N.D., van Doorn H.R., Nguyen T.H., Horby P. A community cluster of oseltamivir-resistant cases of 2009 H1N1 influenza. N Engl J Med 2010, 362(1):86-87.
6. Chen H., Cheung C.L., Tai H., Zhao P., Chan J.F., Cheng V.C., et al. Oseltamivir-resistant influenza A pandemic (H1N1) 2009 virus, Hong Kong. China Emerg Infect Dis 2009, 15(12):1970-1972.
7. Gulland A. First cases of spread of oseltamivir resistant swine flu between patients are reported in Wales. BMJ 2009, 339:b4975.
8. Baz M., Abed Y., Papenburg J., Bouhy X., Hamelin M.E., Boivin G. Emergence of oseltamivir-resistant pandemic H1N1 virus during prophylaxis. N Engl J Med 2009, 361(23):2296-2297.
9. Oseltamivir-resistant 2009 pandemic influenza A (H1N1) virus infection in two summer campers receiving prophylaxis-North Carolina, 2009. MMWR Morb Mortal Wkly Rep 2009; 58(35):969-72.
10. Leung T.W., Tai A.L., Cheng P.K., Kong M.S., Lim W. Detection of an oseltamivir-resistant pandemic influenza A/H1N1 virus in Hong Kong. J Clin Virol 2009, 46(3):298-299.
11. Oseltamivir-resistant novel influenza A (H1N1) virus infection in two immunosuppressed patients-Seattle, Washington, 2009. MMWR Morb Mortal Wkly Rep 2009, 58(32):893-896.
12. WHO Update on oseltamivir-resistant pandemic A (H1N1) 2009 influenza virus: January 2010. Wkly Epidemiol Rec Pandemic (H1N1) 2009 2010, 85(6):3.
13. CDC Update: Influenza Activity-United States, August 30, 2009-January 9, 2010. Morb Mortal Wkly Rep (MMWR) 2010, 59(2):5.
14. Moscona A. Oseltamivir resistance-disabling our influenza defenses. N Engl J Med 2005, 353(25):2633-2636.
15. Collins P.J., Haire L.F., Lin Y.P., Liu J., Russell R.J., Walker P.A., et al. Structural basis for oseltamivir resistance of influenza viruses. Vaccine 2009, 27(45):6317-6323.
16. Kiso M., Mitamura K., Sakai-Tagawa Y., Shiraishi K., Kawakami C., Kimura K., et al. Resistant influenza A viruses in children treated with oseltamivir: descriptive study. Lancet 2004, 364(9436):759-765.
17. Le Q.M., Kiso M., Someya K., Sakai Y.T., Nguyen T.H., Nguyen K.H., et al. Avian flu: isolation of drug-resistant H5N1 virus. Nature 2005, 437(7062):1108.
18. Deyde V.M., Nguyen T., Bright R.A., Balish A., Shu B., Lindstrom S., et al. Detection of molecular markers of antiviral resistance in influenza A (H5N1) viruses using a pyrosequencing method. Antimicrob Agents Chemother 2009, 53(3):1039-1047.
19. Bolotin S., Robertson A.V., Eshaghi A., De Lima C., Lombos E., Chong-King E., et al. Development of a novel real-time reverse-transcriptase PCR method for the detection of H275Y positive influenza A H1N1 isolates. J Virol Methods 2009, 158(1-2):190-194.
20. Liu C.M., Driebe E.M., Schupp J., Kelley E., Nguyen J.T., McSharry J.J., et al. Rapid quantification of single-nucleotide mutations in mixed influenza A viral populations using allele-specific mixture analysis. J Virol Methods 2010, 163(1):109-115.
21. Chutinimitkul S., Suwannakarn K., Chieochansin T., Mai le Q., Damrongwatanapokin S., Chaisingh A., et al. H5N1 oseltamivir-resistance detection by real-time PCR using two high sensitivity labeled TaqMan probes. J Virol Methods 2007, 139(1):44-49.
22. van der Vries E., Jonges M., Herfst S., Maaskant J., Van der Linden A., Guldemeester J., et al. Evaluation of a rapid molecular algorithm for detection of pandemic influenza A (H1N1) 2009 virus and screening for a key oseltamivir resistance (H275Y) substitution in neuraminidase. J Clin Virol 2010, 47(1):34-37.
23. Hindiyeh M., Ram D., Mandelboim M., Meningher T., Hirsh S., Robinov J., et al. Rapid detection of influenza A pandemic (H1N1) 2009 virus neuraminidase resistance mutation H275Y by real-time RT-PCR. J Clin Microbiol 2010, 48(5):1884-1887.
24. Metzner K.J., Rauch P., Walter H., Boesecke C., Zollner B., Jessen H., et al. Detection of minor populations of drug-resistant HIV-1 in acute seroconverters. AIDS 2005, 19(16):1819-1825.
25. Newton C.R., Graham A., Heptinstall L.E., Powell S.J., Summers C., Kalsheker N., et al. Analysis of any point mutation in DNA The amplification refractory mutation system (ARMS). Nucleic Acids Res 1989, 17(7):2503-2516.
26. Latorra D., Campbell K., Wolter A., Hurley J.M. Enhanced allele-specific PCR discrimination in SNP genotyping using 3' locked nucleic acid (LNA) primers. Hum Mutat 2003, 22(1):79-85.
27. Kuypers J., Wright N., Morrow R. Evaluation of quantitative and type-specific real-time RT-PCR assays for detection of respiratory syncytial virus in respiratory specimens from children. J Clin Virol 2004, 31(2):123-129.
28. Germer S., Holland M.J., Higuchi R. High-throughput SNP allele-frequency determination in pooled DNA samples by kinetic PCR. Genome Res 2000, 10(2):258-266.