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Volumn 4, Issue 3, 2010, Pages 225-245

A service-based framework for pharmacogenomics data integration

Author keywords

context awareness; data as a service; mashup; ontology; Web services

Indexed keywords

CONCEPTUAL MODEL; CONTEXT MODELS; CONTEXT- AWARENESS; DATA FORMAT; DATA INTEGRATION; DYNAMIC SERVICE COMPOSITION; EXPERIMENT METHODS; EXPLOSIVE GROWTH; INFORMATION-RETRIEVAL TECHNOLOGY; MULTIPLE RESOURCES; ONTOLOGY WEB SERVICES; PHARMACOGENOMICS; PROTOTYPE SYSTEM; PUBLIC DATABASE; SCIENTIFIC DATA; SCIENTIFIC RESEARCHES; SERVICE MASHUP; SERVICE ORCHESTRATION; SERVICE ORIENTED; SERVICE SELECTION; SERVICE-BASED; STANDARD PROTOCOLS; WEB 2.0; WEB PORTAL;

EID: 77955549084     PISSN: 17517575     EISSN: 17517583     Source Type: Journal    
DOI: 10.1080/17517575.2010.498525     Document Type: Article
Times cited : (44)

References (48)
  • 1
    • 77955542808 scopus 로고    scopus 로고
    • 3D-Genomics, [online]. Available from, [Accessed 20 August 2009]
    • 3D-Genomics, 2004. 3D-genomics database homepage [online]. Available from: http://www.sbg.bio.ic.ac.uk/3dgenomics/ [Accessed 20 August 2009].
    • (2004) 3D-genomics Database Homepage
  • 2
    • 38149061408 scopus 로고    scopus 로고
    • Context-aware workflow management
    • Ardissono, L., et al., 2007. Context-aware workflow management. Lecture Notes in Computer Science, 4607, 332-333.
    • (2007) Lecture Notes In Computer Science , vol.4607 , pp. 332-333
    • Ardissono, L.1
  • 3
    • 84863887173 scopus 로고    scopus 로고
    • Data itegration in the biomedical informatics research network (BIRN)
    • In: B. Ludascher and L. Raschid, eds., San Diego, CA: USA
    • '05), San Diego, CA: USA.
    • (2005) '05)
    • Astakhov, V.1
  • 5
    • 62149093579 scopus 로고    scopus 로고
    • [online]. Available from, [Accessed 24 August 2009]
    • Atlas, T., 2008. Tele Atlas [online]. Available from: http://www.teleatlas.com/ [Accessed 24 August 2009].
    • (2008) Tele Atlas
    • Atlas, T.1
  • 6
    • 48249158190 scopus 로고    scopus 로고
    • Bio2RDF: Towards a Mashup to build bioinformatics knowledge systems
    • Belleau, F., et al., 2008. Bio2RDF: towards a Mashup to build bioinformatics knowledge systems. Journal of Biomedical Informatics, 41, 706-716.
    • (2008) Journal of Biomedical Informatics , vol.41 , pp. 706-716
    • Belleau, F.1
  • 7
    • 77955545283 scopus 로고    scopus 로고
    • CellMiner, [online]. Available from, [Accessed 25 August 2009]
    • CellMiner, 2009. CellMiner [online]. Available from: http://discover.nci.nih.gov/cellminer/ [Accessed 25 August 2009].
    • (2009) CellMiner
  • 8
    • 84947998227 scopus 로고    scopus 로고
    • Extending WebML for modeling multi-channel context-aware web applications
    • Rome, Italy
    • '03), Vol. 4607, Rome, Italy, 225-233.
    • (2003) '03) , vol.4607 , pp. 225-233
    • Ceri, S.1    Daniel, F.2    Matera, M.3
  • 9
    • 0034957542 scopus 로고    scopus 로고
    • K2/Kleisli and GUS: Experiments in integrated access to genomic data sources
    • Davidson, S.B., et al., 2001. K2/Kleisli and GUS: experiments in integrated access to genomic data sources. IBM Systems Journal, 40, 512-531.
    • (2001) IBM Systems Journal , vol.40 , pp. 512-531
    • Davidson, S.B.1
  • 11
    • 38549098540 scopus 로고    scopus 로고
    • The molecular biology database collection: 2008 update
    • Galperin, M.Y., 2008. The molecular biology database collection: 2008 update. Nucleic Acids Research, 36, D2-D4.
    • (2008) Nucleic Acids Research , vol.36
    • Galperin, M.Y.1
  • 12
    • 58149185138 scopus 로고    scopus 로고
    • Nucleic acids research annual database issue and the NAR online molecular biology database collection in 2009
    • Galperin, M.Y. and Cochrane, G.R., 2009. Nucleic acids research annual database issue and the NAR online molecular biology database collection in 2009. Nucleic Acids Research, 37, D1-D4.
    • (2009) Nucleic Acids Research , vol.37
    • Galperin, M.Y.1    Cochrane, G.R.2
  • 13
    • 0348183205 scopus 로고    scopus 로고
    • Project Aura: Toward distraction-free pervasive computing
    • Garlan, D., et al., 2002. Project Aura: toward distraction-free pervasive computing. IEEE Pervasive Computing, 1 (2), 22-31.
    • (2002) IEEE Pervasive Computing , vol.1 , Issue.2 , pp. 22-31
    • Garlan, D.1
  • 14
    • 0343191936 scopus 로고    scopus 로고
    • Thesis (PhD). Massachusetts Institute of Technology. Google, 2005. Google maps [online]. Available from, [Accessed 21 August 2009]
    • Goh, C.H., 1997. Representing and reasoning about semantic conflicts in heterogeneous information sources. Thesis (PhD). Massachusetts Institute of Technology. Google, 2005. Google maps [online]. Available from: http://maps.google.com/ [Accessed 21 August 2009].
    • (1997) Representing and Reasoning About Semantic Conflicts In Heterogeneous Information Sources
    • Goh, C.H.1
  • 15
    • 77955543575 scopus 로고    scopus 로고
    • GTI, [online]. Available from
    • GTI, 2004. Numbers and sizes in TERAPIX [online]. Available from: http://terapix.iap.fr/ article.php?id_article1/415 [Accessed 20 August 2009].
    • (2004) Numbers and Sizes In TERAPIX
  • 17
    • 24944582169 scopus 로고    scopus 로고
    • Context-aware workflow language based on web services for ubiquitous computing
    • Han, J., Cho, Y., and Choi, J., 2005. Context-aware workflow language based on web services for ubiquitous computing. Lecture Notes in Computer Science, 3481.
    • (2005) Lecture Notes In Computer Science , pp. 3481
    • Han, J.1    Cho, Y.2    Choi, J.3
  • 18
    • 19944374209 scopus 로고    scopus 로고
    • Modeling of context information for pervasive computing applications
    • Orlando, Florida, USA
    • '02), Orlando, Florida, USA.
    • (2002) '02)
    • Held, A.1    Buchholz, S.2    Schill, A.3
  • 19
    • 34548556657 scopus 로고    scopus 로고
    • The molecular medicine informatics model (MMIM)
    • Hibber, M., et al., 2007. The molecular medicine informatics model (MMIM). Studies in Health Technology and Informatics, 126, 77-86.
    • (2007) Studies In Health Technology and Informatics , vol.126 , pp. 77-86
    • Hibber, M.1
  • 20
    • 77955539962 scopus 로고
    • HUGO, [online]. Available from, [Accessed 25 August 2009]
    • HUGO, 1989. Human genome organization (HUGO) [online]. Available from: http://www.hugo-international.org/ [Accessed 25 August 2009].
    • (1989) Human Genome Organization (HUGO)
  • 21
    • 77955544966 scopus 로고    scopus 로고
    • KEGG, [online]. Available from, [Accessed 21 August 2009]
    • KEGG, 1999. Kyoto encyclopedia of genes and genomes (KEGG) homepage [online]. Available from: http://www.genome.jp/kegg/ [Accessed 21 August 2009].
    • (1999) Kyoto Encyclopedia of Genes and Genomes (KEGG) Homepage
  • 24
    • 4544384353 scopus 로고    scopus 로고
    • INBIOMED: A platform for the integration and sharing of genetic, clinical and epidemiological data oriented to biomedical research
    • Taichung, Taiwan
    • '04), Taichung, Taiwan.
    • (2004) '04)
    • Lopez-Alonso, V.1
  • 25
    • 30344458044 scopus 로고    scopus 로고
    • [online]. Available from, [Accessed 25 August 2009]
    • Martin, D., et al., 2004. OWL-S: sementic markup for web service [online]. Available from: http://www.w3.org/Submission/OWL-S/ [Accessed 25 August 2009].
    • (2004) OWL-S: Sementic Markup For Web Service
    • Martin, D.1    Et al.2
  • 27
    • 70549104863 scopus 로고    scopus 로고
    • NCBI, [online]. Available from, [Accessed 25 August 2009]
    • NCBI, 2009. The national center for biotechnology information (NCBI) [online]. Available from: http://www.ncbi.nlm.nih.gov/ [Accessed 25 August 2009].
    • (2009) The National Center For Biotechnology Information (NCBI)
  • 28
    • 77955544340 scopus 로고    scopus 로고
    • NCI60, [online]. Available from, [Accessed 25 August 2009]
    • NCI60, 1999. NCI60 cancer microarray project [online]. Available from: http://genome-www.stanford.edu/nci60/ [Accessed 25 August 2009].
    • (1999) NCI60 Cancer Microarray Project
  • 29
    • 77955547007 scopus 로고    scopus 로고
    • OBO, [online]. Available from, [Accessed 25 August 2009]
    • OBO, 2007. OBO foundry [online]. Available from:http://www.obofoundry.org/ [Accessed 25 August 2009].
    • (2007) OBO Foundry
  • 30
    • 0032919364 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Ogata, H., et al., 1999. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Research, 27, 29-34.
    • (1999) Nucleic Acids Research , vol.27 , pp. 29-34
    • Ogata, H.1
  • 31
    • 42149182005 scopus 로고    scopus 로고
    • [online]. Available from, [Accessed 25 August 2009]
    • Ontology, G., 1999. Gene ontology [online]. Available from: http://www.geneontology.org/ [Accessed 25 August 2009].
    • (1999) Gene Ontology
    • Ontology, G.1
  • 32
    • 77955545606 scopus 로고    scopus 로고
    • [online]. Available from, [Accessed 24 August 2009]
    • Panoramio, 2007. Panoramio [online]. Available from: http://www.panoramio.com/ [Accessed 24 August 2009].
    • (2007) Panoramio
    • Panoramio1
  • 33
    • 43749118646 scopus 로고    scopus 로고
    • Introduction to special issue on service oriented computing (SOC)
    • Papazoglou, M.P., 2008. Introduction to special issue on service oriented computing (SOC). ACM Transactions on the Web, 2 (2), 1-2.
    • (2008) ACM Transactions On the Web , vol.2 , Issue.2 , pp. 1-2
    • Papazoglou, M.P.1
  • 34
    • 77955546683 scopus 로고    scopus 로고
    • PubMed, [online]. Available from, [Accessed 21 August 2009]
    • PubMed, 2009. PubMed database homepage [online]. Available from: http://pubmed.gov/ [Accessed 21 August 2009].
    • (2009) PubMed Database Homepage
  • 37
    • 35948989284 scopus 로고    scopus 로고
    • The OBO foundry: Coordinated evolution of ontologies to support biomedical data integration
    • Smith, B., et al., 2007. The OBO foundry: coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology, 25 (11), 1251-1255.
    • (2007) Nature Biotechnology , vol.25 , Issue.11 , pp. 1251-1255
    • Smith, B.1
  • 38
    • 77955543270 scopus 로고    scopus 로고
    • SPIN, [online]. Available from, [Accessed 24 August 2009]
    • SPIN, 2000. Shared pathlogy informatics network (SPIN) [online]. Available from: http:// cdp.cancer.gov/spin/ [Accessed 24 August 2009].
    • (2000) Shared Pathlogy Informatics Network (SPIN)
  • 39
    • 33644873184 scopus 로고    scopus 로고
    • BioGRID: A general repository for intreaction datasets
    • Stark, C., et al., 2006. BioGRID: a general repository for intreaction datasets. Nucleic Acids Research, 34, D535-D539.
    • (2006) Nucleic Acids Research , vol.34
    • Stark, C.1
  • 40
    • 0038745614 scopus 로고    scopus 로고
    • Integrating biological databases
    • Stein, L.D., 2003. Integrating biological databases. Nature Reviews Genetics, 4, 337-345.
    • (2003) Nature Reviews Genetics , vol.4 , pp. 337-345
    • Stein, L.D.1
  • 42
    • 77955525929 scopus 로고    scopus 로고
    • Foundations of component-based systems
    • New York, USA: Cambridge University Press
    • Szyperski, C., 2000. Foundations of component-based systems. In Component software and the way ahead. New York, USA: Cambridge University Press, 1-20.
    • (2000) Component Software and The Way Ahead , pp. 1-20
    • Szyperski, C.1
  • 43
    • 77955538872 scopus 로고    scopus 로고
    • TERAPIX, [online]. Available from, [Accessed 20 August 2009]
    • TERAPIX, 2003. TERAPIX [online]. Available from: http://terapix.iap.fr/ [Accessed 20 August 2009].
    • (2003) TERAPIX
  • 44
    • 77955525778 scopus 로고    scopus 로고
    • UniGene, [online]. Available from, [Accessed 25 August 2009]
    • UniGene, 2003. UniGene database portal [online]. Available from: http://www.ncbi.nlm.nih. gov/entrez/query.fcgi?db1/4unigene [Accessed 25 August 2009].
    • (2003) UniGene Database Portal
  • 45
    • 36749057909 scopus 로고    scopus 로고
    • Technical report, Computer Laboratory, University of Cambridge, Cambridge, UK
    • Vukovic, M., 2007. Context aware service composition. Technical report, Computer Laboratory, University of Cambridge, Cambridge, UK.
    • (2007) Context Aware Service Composition
    • Vukovic, M.1
  • 46
    • 1542320998 scopus 로고    scopus 로고
    • An integration method for the specification of rule-oriented mediators
    • Kyoto, Japan
    • '99), Kyoto, Japan, p. 109.
    • (1999) '99) , pp. 109
    • Wache, H.1
  • 47
    • 0010222050 scopus 로고    scopus 로고
    • Ontology-based integration of inforamtion - a survey of existing approaches
    • Washington, USA
    • Wache, H., et al., 2001. Ontology-based integration of inforamtion - a survey of existing approaches. In: IJCAI-01 workshop: ontologies and information sharing, Seattle, Washington, USA, 108-117.
    • (2001) IJCAI-01 Workshop: Ontologies and Information Sharing, Seattle , pp. 108-117
    • Wache, H.1
  • 48
    • 33745711661 scopus 로고    scopus 로고
    • The universal genetics database: Information sharing in genetics and beyond
    • Widdows, D. and Barmada, M., 2006. The universal genetics database: information sharing in genetics and beyond. BioTech International, 18, 11-13.
    • (2006) BioTech International , vol.18 , pp. 11-13
    • Widdows, D.1    Barmada, M.2


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