메뉴 건너뛰기




Volumn 45, Issue 8, 2010, Pages 735-755

Theory of the influence of changes in salt concentration on the configuration of intrinsically curved, impenetrable, rod-like structures modeling DNA minicircles

Author keywords

Bifurcation theory; DNA elasticity; Electrically charged rod like structures

Indexed keywords

BASE PAIRS; BIFURCATION THEORY; CONCENTRATION OF; COUNTERIONS; DNA ELASTICITY; DNA MINICIRCLES; DNA MOLECULES; DNA STRANDS; DOUBLE-HELICAL; ELASTIC FORCE; ELECTRONIC CHARGES; EQUILIBRIUM CONFIGURATION; MINIMUM ENERGY CONFIGURATION; PHOSPHATE GROUP; POSITIVELY CHARGED; RADIUS OF GYRATION; ROD-LIKE STRUCTURES; SALT CONCENTRATION;

EID: 77955510846     PISSN: 00207462     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijnonlinmec.2010.05.004     Document Type: Article
Times cited : (8)

References (32)
  • 1
    • 0038497542 scopus 로고
    • A structure for deoxyribose nucleic acid
    • J.D. Watson, and F.H.C. Crick A structure for deoxyribose nucleic acid Nature 171 1953 737 738
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.C.2
  • 2
    • 0038298831 scopus 로고    scopus 로고
    • Theory of sequence-dependent DNA elasticity
    • B.D. Coleman, W.K. Olson, and D. Swigon Theory of sequence-dependent DNA elasticity J. Chem. Phys. 118 2003 7127 7140
    • (2003) J. Chem. Phys. , vol.118 , pp. 7127-7140
    • Coleman, B.D.1    Olson, W.K.2    Swigon, D.3
  • 3
    • 34250683788 scopus 로고    scopus 로고
    • On bifurcation of equilibria of intrinsically curved, electrically charged, rod-like structures that model DNA molecule in a solution
    • Y.Y. Biton, B.D. Coleman, and D. Swigon On bifurcation of equilibria of intrinsically curved, electrically charged, rod-like structures that model DNA molecule in a solution J. Elasticity 87 2007 187 210
    • (2007) J. Elasticity , vol.87 , pp. 187-210
    • Biton, Y.Y.1    Coleman, B.D.2    Swigon, D.3
  • 5
    • 0029126044 scopus 로고
    • The assessment of the geometry of dinucleotide steps in double-helical DNA: A new local calculation scheme
    • M.A. El Hassan, and C.R. Calladine The assessment of the geometry of dinucleotide steps in double-helical DNA: a new local calculation scheme J. Mol. Biol. 251 1995 648 664
    • (1995) J. Mol. Biol. , vol.251 , pp. 648-664
    • El Hassan, M.A.1    Calladine, C.R.2
  • 6
    • 0018447932 scopus 로고
    • Anisotropic flexibility of DNA and the nucleosomal structure
    • V.B. Zhurkin, Y.P. Lysov, and V. Ivanov Anisotropic flexibility of DNA and the nucleosomal structure Nucleic Acids Res. 6 1979 1081 1096
    • (1979) Nucleic Acids Res. , vol.6 , pp. 1081-1096
    • Zhurkin, V.B.1    Lysov, Y.P.2    Ivanov, V.3
  • 7
    • 0031559721 scopus 로고    scopus 로고
    • Modeling self-contact forces in the elastic theory of DNA supercoiling
    • T.P. Westcott, I. Tobias, and W.K. Olson Modeling self-contact forces in the elastic theory of DNA supercoiling J. Chem. Phys. 107 1997 3967 3980
    • (1997) J. Chem. Phys. , vol.107 , pp. 3967-3980
    • Westcott, T.P.1    Tobias, I.2    Olson, W.K.3
  • 8
    • 3042572330 scopus 로고    scopus 로고
    • Implications of the dependence of the elastic properties of DNA on nucleotide sequence
    • W.K. Olson, D. Swigon, and B.D. Coleman Implications of the dependence of the elastic properties of DNA on nucleotide sequence Philos. Trans. R. Soc. 362 2004 1403 1422
    • (2004) Philos. Trans. R. Soc. , vol.362 , pp. 1403-1422
    • Olson, W.K.1    Swigon, D.2    Coleman, B.D.3
  • 9
    • 11644276439 scopus 로고
    • Limiting laws and counterion condensation in polyelectrolyte solutions: I. Colligative properties
    • G.S. Manning Limiting laws and counterion condensation in polyelectrolyte solutions: I. Colligative properties J. Chem. Phys. 51 1969 924 933
    • (1969) J. Chem. Phys. , vol.51 , pp. 924-933
    • Manning, G.S.1
  • 10
    • 0025672928 scopus 로고
    • Approach to the limit of counterion condensation
    • M.O. Fenley, G.S. Manning, and W.K. Olson Approach to the limit of counterion condensation Biopolymers 30 1990 1191 1203
    • (1990) Biopolymers , vol.30 , pp. 1191-1203
    • Fenley, M.O.1    Manning, G.S.2    Olson, W.K.3
  • 11
    • 0028466084 scopus 로고
    • An attractive force between two rodlike polyions mediated by the sharing of condensed counterions
    • J. Ray, and G.S. Manning An attractive force between two rodlike polyions mediated by the sharing of condensed counterions J. Am. Chem. Soc. 10 1994 2450 2461
    • (1994) J. Am. Chem. Soc. , vol.10 , pp. 2450-2461
    • Ray, J.1    Manning, G.S.2
  • 13
    • 11244331520 scopus 로고    scopus 로고
    • Effect of mono- and multivalent salts on angle-dependent attractions between charged rods
    • K. Lee, I. Borukhov, W.M. Gelbart, A.J. Liu, and M.J. Stevens Effect of mono- and multivalent salts on angle-dependent attractions between charged rods Phys. Rev. Lett. 93 2004 128101/1128101/4
    • (2004) Phys. Rev. Lett. , vol.93
    • Lee, K.1    Borukhov, I.2    Gelbart, W.M.3    Liu, A.J.4    Stevens, M.J.5
  • 14
    • 0033764926 scopus 로고    scopus 로고
    • Elastic stability of DNA configurations: I. General theory
    • I. Tobias, D. Swigon, and B.D. Coleman Elastic stability of DNA configurations: I. General theory Phys. Rev. E 61 2000 747 758
    • (2000) Phys. Rev. e , vol.61 , pp. 747-758
    • Tobias, I.1    Swigon, D.2    Coleman, B.D.3
  • 15
    • 0033754160 scopus 로고    scopus 로고
    • Elastic stability of DNA configurations: II. Supercoiled plasmids with self-contact
    • B.D. Coleman, D. Swigon, and I. Tobias Elastic stability of DNA configurations: II. Supercoiled plasmids with self-contact Phys. Rev. E 61 2000 759 770
    • (2000) Phys. Rev. e , vol.61 , pp. 759-770
    • Coleman, B.D.1    Swigon, D.2    Tobias, I.3
  • 16
    • 0034965398 scopus 로고    scopus 로고
    • Theory of supercoiled elastic rings with self-contact and its application to DNA plasmids
    • B.D. Coleman, and D. Swigon Theory of supercoiled elastic rings with self-contact and its application to DNA plasmids J. Elasticity 60 2000 173 221
    • (2000) J. Elasticity , vol.60 , pp. 173-221
    • Coleman, B.D.1    Swigon, D.2
  • 20
    • 33646991191 scopus 로고
    • A pseudo-arclength continuation method for nonlinear eigenvalue problems
    • H.D. Mittelmann A pseudo-arclength continuation method for nonlinear eigenvalue problems SIAM J. Numer. Anal. 23 1986 1007 1016
    • (1986) SIAM J. Numer. Anal. , vol.23 , pp. 1007-1016
    • Mittelmann, H.D.1
  • 23
    • 0000751914 scopus 로고
    • Self-linking and the gauss integral in higher dimensions
    • J.H. White Self-linking and the gauss integral in higher dimensions Am. J. Math. 91 1969 693 728
    • (1969) Am. J. Math. , vol.91 , pp. 693-728
    • White, J.H.1
  • 24
    • 0002632975 scopus 로고
    • An introduction to the geometry and topology of DNA structure
    • J.H. White An introduction to the geometry and topology of DNA structure M.S. Waterman, Mathematical Methods for DNA Sequences 1989 CRC Press Boca Raton, FL 225 253
    • (1989) Mathematical Methods for DNA Sequences , pp. 225-253
    • White, J.H.1
  • 25
    • 0032530555 scopus 로고    scopus 로고
    • DNA sequence-dependent deformability deduced from protein-DNA crystal complexes
    • W.K. Olson, A.A. Gorin, X.J. Lu, L.M. Hock, and V.B. Zhurkin DNA sequence-dependent deformability deduced from protein-DNA crystal complexes Proc. Natl. Acad. Sci. USA 95 1998 11163 11168
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 11163-11168
    • Olson, W.K.1    Gorin, A.A.2    Lu, X.J.3    Hock, L.M.4    Zhurkin, V.B.5
  • 26
    • 0042872746 scopus 로고    scopus 로고
    • Hidden symmetry of global solutions in twisted elastic rings
    • G. Domokos, and T.J. Healey Hidden symmetry of global solutions in twisted elastic rings J. Nonlinear Sci. 11 2001 47 67
    • (2001) J. Nonlinear Sci. , vol.11 , pp. 47-67
    • Domokos, G.1    Healey, T.J.2
  • 27
    • 0031621653 scopus 로고    scopus 로고
    • Metastability of a circular o-ring due to intrinsic curvature
    • T. Charitat, and B. Fourcade Metastability of a circular o-ring due to intrinsic curvature Eur. Phys. J. B 1 1998 333 336
    • (1998) Eur. Phys. J. B , vol.1 , pp. 333-336
    • Charitat, T.1    Fourcade, B.2
  • 28
    • 0001443491 scopus 로고
    • Sur les classes d'isotopie des noeuds tridimensionnels et leurs invariants
    • G. Calugareanu Sur les classes d'isotopie des noeuds tridimensionnels et leurs invariants Czechoslovak Math. J. 11 1961 588 625
    • (1961) Czechoslovak Math. J. , vol.11 , pp. 588-625
    • Calugareanu, G.1
  • 29
    • 0015040327 scopus 로고
    • The writhing number of a space curve
    • F.B. Fuller The writhing number of a space curve Proc. Natl. Acad. Sci. USA 68 1971 815 819
    • (1971) Proc. Natl. Acad. Sci. USA , vol.68 , pp. 815-819
    • Fuller, F.B.1
  • 30
    • 0031969344 scopus 로고    scopus 로고
    • The elastic rod model for DNA and its application to the tertiary structure of DNA minicircles in mononucleosomes
    • D. Swigon, B.D. Coleman, and I. Tobias The elastic rod model for DNA and its application to the tertiary structure of DNA minicircles in mononucleosomes Biophys. J. 74 1998 2515 2530
    • (1998) Biophys. J. , vol.74 , pp. 2515-2530
    • Swigon, D.1    Coleman, B.D.2    Tobias, I.3
  • 32
    • 0022359711 scopus 로고
    • On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel electrophoretic mobilities
    • S. Diekmann, and J.C. Wang On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel electrophoretic mobilities J. Mol. Biol. 186 1985 1 11
    • (1985) J. Mol. Biol. , vol.186 , pp. 1-11
    • Diekmann, S.1    Wang, J.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.