-
1
-
-
1842591130
-
The regulation of bacterial transcription initiation
-
Browning, D. and Busby, S. (2004) The regulation of bacterial transcription initiation. Nat. Rev. Microbiol. 2, 57-65
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 57-65
-
-
Browning, D.1
Busby, S.2
-
2
-
-
33646184857
-
A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coliK12 adapts from aerobic to anaerobic growth
-
Constantinidou, C., Hobman, J. L., Griffiths, L., Patel, M. D., Penn, C. W., Cole, J. A. and Overton, T. W. (2006) A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coliK12 adapts from aerobic to anaerobic growth. J. Biol. Chem. 281, 4802-4815
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 4802-4815
-
-
Constantinidou, C.1
Hobman, J.L.2
Griffiths, L.3
Patel, M.D.4
Penn, C.W.5
Cole, J.A.6
Overton, T.W.7
-
3
-
-
30644465547
-
The comprehensive updated regulatory network of Escherichia coli K-12
-
Salgado, H., Santos-Zavaleta, A., Garma-Castro, S., Peralto-Gil, M., Penaloza-Spinola, M. I., Martinez-Antonio, A., Karp, P. D. and Collado-Vides, J. (2006) The comprehensive updated regulatory network of Escherichia coli K-12. BMC Bioinf. 7, 5
-
(2006)
BMC Bioinf.
, vol.7
, pp. 5
-
-
Salgado, H.1
Santos-Zavaleta, A.2
Garma-Castro, S.3
Peralto-Gil, M.4
Penaloza-Spinola, M.I.5
Martinez-Antonio, A.6
Karp, P.D.7
Collado-Vides, J.8
-
4
-
-
0024989737
-
FNR and its role in oxygen-regulated gene expression in Escherichia coli
-
Spiro, S. and Guest, J. R. (1990) FNR and its role in oxygen-regulated gene expression in Escherichia coli. FEMS Microbiol. Rev. 6, 399-428
-
(1990)
FEMS Microbiol. Rev.
, vol.6
, pp. 399-428
-
-
Spiro, S.1
Guest, J.R.2
-
5
-
-
0001979728
-
The NAR modulon systems: Nitrate and nitrite regulation of anaerobic gene expression
-
(Lin, E. and Lynch, A., eds), R.G. Landes Company, Austin
-
Darwin, A. J. and Stewart, V. (1996) The NAR modulon systems: nitrate and nitrite regulation of anaerobic gene expression. In Regulation of Gene Expression in Escherichia coli (Lin, E. and Lynch, A., eds), pp. 343-359, R.G. Landes Company, Austin
-
(1996)
Regulation of Gene Expression in Escherichia Coli
, pp. 343-359
-
-
Darwin, A.J.1
Stewart, V.2
-
6
-
-
0037326468
-
Nitrate- And nitrite-responsive sensors NarX and NarQ of proteobacteria
-
Stewart, V. (2003) Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria. Biochem. Soc. Trans. 31, 1-10
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 1-10
-
-
Stewart, V.1
-
7
-
-
33846892483
-
Regulators of bacterial responses to nitric oxide
-
Spiro, S. (2007) Regulators of bacterial responses to nitric oxide. FEMS Microbiol. Rev. 31, 193-211
-
(2007)
FEMS Microbiol. Rev.
, vol.31
, pp. 193-211
-
-
Spiro, S.1
-
8
-
-
77950862348
-
Theres's NO stopping NsrR, a global regulator of the bacterial NO stress response
-
Tucker, N. P., Le Brun, N. E., Dixon, R. and Hutchings, M. I. (2010) Theres's NO stopping NsrR, a global regulator of the bacterial NO stress response. Trends Microbiol. 18, 149-156
-
(2010)
Trends Microbiol.
, vol.18
, pp. 149-156
-
-
Tucker, N.P.1
Le Brun, N.E.2
Dixon, R.3
Hutchings, M.I.4
-
9
-
-
70350144292
-
NsrR targets in the Escherichia coligenome: New insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility
-
Partridge, J. D., Bodenmiller, D. M., Humphrys, M. S. and Spiro, S. (2009) NsrR targets in the Escherichia coligenome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility. Mol. Microbiol. 73, 680-694
-
(2009)
Mol. Microbiol.
, vol.73
, pp. 680-694
-
-
Partridge, J.D.1
Bodenmiller, D.M.2
Humphrys, M.S.3
Spiro, S.4
-
10
-
-
14644406240
-
Transcriptional regulation of a hybrid cluster (prismane) protein
-
Filenko, N. A., Browning, D. F. and Cole, J. A. (2005) Transcriptional regulation of a hybrid cluster (prismane) protein. Biochem. Soc. Trans. 33, 195-197
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 195-197
-
-
Filenko, N.A.1
Browning, D.F.2
Cole, J.A.3
-
11
-
-
34250316617
-
The NsrR regulon of Escherichia coliK-12 includes genes encoding the hybrid cluster protein and the periplasmic, respiratory nitrite reductase
-
Filenko, N., Spiro, S., Browning, D. F., Squire, D., Overton, T. W., Cole, J. and Constantinidou, C. (2007) The NsrR regulon of Escherichia coliK-12 includes genes encoding the hybrid cluster protein and the periplasmic, respiratory nitrite reductase. J. Bacteriol. 189, 4410-4417
-
(2007)
J. Bacteriol.
, vol.189
, pp. 4410-4417
-
-
Filenko, N.1
Spiro, S.2
Browning, D.F.3
Squire, D.4
Overton, T.W.5
Cole, J.6
Constantinidou, C.7
-
12
-
-
0027120805
-
Broad host range plasmids carrying the Escherichia coli lactose and galactose operons
-
Lodge, J., Fear, J., Busby, S., Gunasekaran, P. and Kamini, N-R. (1992) Broad host range plasmids carrying the Escherichia coli lactose and galactose operons. FEMS Microbiol. Lett. 95, 271-276
-
(1992)
FEMS Microbiol. Lett.
, vol.95
, pp. 271-276
-
-
Lodge, J.1
Fear, J.2
Busby, S.3
Gunasekaran, P.4
Kamini, N.-R.5
-
13
-
-
0025325983
-
The 'megaprimer' method of site directed mutagenesis
-
Sarkar, G. and Sommer, S. S. (1990) The 'megaprimer' method of site directed mutagenesis. Biotechniques 8, 404-407
-
(1990)
Biotechniques
, vol.8
, pp. 404-407
-
-
Sarkar, G.1
Sommer, S.S.2
-
14
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller, J. (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.1
-
15
-
-
0020049458
-
Generation of a membrane potential by one of two independent pathways of nitrite reduction by E. coli
-
Pope, N. R. and Cole, J. (1982) Generation of a membrane potential by one of two independent pathways of nitrite reduction by E. coli. J. Gen. Microbiol. 128, 319-322
-
(1982)
J. Gen. Microbiol.
, vol.128
, pp. 319-322
-
-
Pope, N.R.1
Cole, J.2
-
16
-
-
1842557558
-
Transcription activation by remodelling of a nucleoprotein assembly: The role of NarL at the FNR-dependent Escherichia coli nir promoter
-
Browning, D. F., Cole, J. A. and Busby, S. J. W. (2004) Transcription activation by remodelling of a nucleoprotein assembly: the role of NarL at the FNR-dependent Escherichia coli nir promoter. Mol. Microbiol. 53, 203-215
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 203-215
-
-
Browning, D.F.1
Cole, J.A.2
Busby, S.J.W.3
-
17
-
-
77954402786
-
Down-regulation of the Escherichia coliK-12 nrf promoter by binding of the NsrR nitric oxide sensing transcription repressor to an upstream site
-
doi:10.1128/JB.00218-10
-
Browning, D. F., Lee, D. J., Spiro, S. and Busby, S. J. (2010) Down-regulation of the Escherichia coliK-12 nrf promoter by binding of the NsrR nitric oxide sensing transcription repressor to an upstream site, J. Bacteriol., doi:10.1128/JB.00218-10
-
(2010)
J. Bacteriol.
-
-
Browning, D.F.1
Lee, D.J.2
Spiro, S.3
Busby, S.J.4
-
18
-
-
66549117119
-
Competition between NarL-dependent activation and Fis-dependent repression controls expression from the Escherichia coli yeaR and ogt promoters
-
Squire, D. J., Xu, M., Cole, J. A., Busby, S. J. and Browning, D. F. (2009) Competition between NarL-dependent activation and Fis-dependent repression controls expression from the Escherichia coli yeaR and ogt promoters. Biochem. J. 420, 249-257
-
(2009)
Biochem. J.
, vol.420
, pp. 249-257
-
-
Squire, D.J.1
Xu, M.2
Cole, J.A.3
Busby, S.J.4
Browning, D.F.5
-
19
-
-
1842506160
-
Regulation at complex bacterial promoters: How bacteria use different promoter organisations to produce different regulatory outcomes
-
Barnard, A., Wolfe, A. and Busby, S. J. (2004) Regulation at complex bacterial promoters: how bacteria use different promoter organisations to produce different regulatory outcomes. Curr. Opin. Microbiol. 7, 102-108
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 102-108
-
-
Barnard, A.1
Wolfe, A.2
Busby, S.J.3
-
20
-
-
0010870712
-
Secrets of bacterial transcription initiation taught by the Escherichia coliFNR protein
-
(Hodgson, D.A. and Thomas, C.M., eds), Cambridge University Press, Cambridge
-
Browning, D. F., Lee, D. J., Green, J. and Busby, S. J. (2002) Secrets of bacterial transcription initiation taught by the Escherichia coliFNR protein. In Signals, Switches, Regulons and Cascades: Control of Bacterial Gene Expression SGM Symposium volume 61 (Hodgson, D.A. and Thomas, C.M., eds), pp. 127-142, Cambridge University Press, Cambridge
-
(2002)
Signals, Switches, Regulons and Cascades: Control of Bacterial Gene Expression SGM Symposium
, vol.61
, pp. 127-142
-
-
Browning, D.F.1
Lee, D.J.2
Green, J.3
Busby, S.J.4
-
21
-
-
29144431508
-
Studies of the distribution of Escherichia colicAMP receptor protein and RNA polymerase along the E. colichromosome
-
Grainger, D. C., Hurd, D., Harrison, M., Holdstock, J. and Busby, S. J. (2005) Studies of the distribution of Escherichia colicAMP receptor protein and RNA polymerase along the E. colichromosome. Proc. Natl. Acad. Sci. U.S.A. 102, 17693-17698
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 17693-17698
-
-
Grainger, D.C.1
Hurd, D.2
Harrison, M.3
Holdstock, J.4
Busby, S.J.5
-
22
-
-
34547394297
-
New targets for the cyclic AMP receptor protein in the Escherichia coli K-12 genome
-
DOI 10.1111/j.1574-6968.2007.00826.x
-
Hollands, K., Busby, S. J. and Lloyd, G. S. (2007) New targets for the cyclic AMP receptor protein in the E. coliK-12 genome. FEMS Lett. 274, 89-94 (Pubitemid 47174318)
-
(2007)
FEMS Microbiology Letters
, vol.274
, Issue.1
, pp. 89-94
-
-
Hollands, K.1
Busby, S.J.W.2
Lloyd, G.S.3
-
23
-
-
47249152834
-
The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions
-
Shimada, T., Ishihama, A., Busby, S. J. and Grainger, D. C. (2008) The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions. Nucleic Acids Res. 36, 3950-3955
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3950-3955
-
-
Shimada, T.1
Ishihama, A.2
Busby, S.J.3
Grainger, D.C.4
-
24
-
-
0032573426
-
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coliK-12 genome
-
Robison, K., McGuire, A. M. and Church, G. M. (1998) A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coliK-12 genome. J. Mol. Biol. 284, 241-254
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 241-254
-
-
Robison, K.1
McGuire, A.M.2
Church, G.M.3
-
26
-
-
0025128277
-
Different physiological roles of two independent pathways for nitrite reduction to ammonia by enteric bacteria
-
Page, L., Griffiths, L. and Cole, J. A. (1990) Different physiological roles of two independent pathways for nitrite reduction to ammonia by enteric bacteria. Arch. Microbiol. 154, 349-354
-
(1990)
Arch. Microbiol.
, vol.154
, pp. 349-354
-
-
Page, L.1
Griffiths, L.2
Cole, J.A.3
-
27
-
-
55749112866
-
Regulation by nucleoid-associated proteins at the Escherichia coli nir operon promoter
-
Browning, D. F., Cole, J. A. and Busby, S. J. (2008) Regulation by nucleoid-associated proteins at the Escherichia coli nir operon promoter. J. Bacteriol. 190, 7258-7267
-
(2008)
J. Bacteriol.
, vol.190
, pp. 7258-7267
-
-
Browning, D.F.1
Cole, J.A.2
Busby, S.J.3
-
28
-
-
31344459536
-
The yjeB ( nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional repressor
-
Bodenmiller, D. M. and Spiro, S. (2006) The yjeB ( nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional repressor. J. Bacteriol. 188, 874-881
-
(2006)
J. Bacteriol.
, vol.188
, pp. 874-881
-
-
Bodenmiller, D.M.1
Spiro, S.2
|