Effects of monospecific banks of salt marsh vegetation on sediment bacterial communities

Microbial Ecology

Volumn 60, Issue 1, 2010, Pages 167-179

  Oliveira, Vanessa ^a   Santos, Ana L ^a   Coelho, Francisco ^a   Gomes, Newton C M ^a   Silva, Helena ^a   Almeida, Adelaide ^a   Cunha, Ângela ^a  

^a UNIVERSITY OF AVEIRO   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

AMARANTHACEAE; ARTICLE; BACTERIUM; ENZYMOLOGY; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY; POACEAE; PORTUGAL; SEDIMENT; WETLAND; BACTERIA;

AMARANTHACEAE; BACTERIA; GEOLOGIC SEDIMENTS; POACEAE; PORTUGAL; WATER MICROBIOLOGY; WETLANDS;

BACTERIA (MICROORGANISMS); HALIMIONE PORTULACOIDES; SPARTINA MARITIMA;

EID: 77955420482     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-010-9678-6     Document Type: Article

References (61)

1. Bagwell CE, Piceno YM, Ashburne-Lucas A, Lovel CR (1998) Physiological diversity of the rhizosphere diazotroph assemblages of selected salt marsh grasses. Appl Environ Microbiol 64: 4276-4282.
2. Bahr M, Crump BC, Klepac-Ceraj V, Sogin ML, Hobbie JE (2005) Molecular characterization of sulfate-reducing bacteria in a New England salt marsh. Environ Microbiol 7: 1175-1185.
3. Berg G, Smalla K (2009) Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbial Ecol 68: 1-13.
4. Bertin C, Yang X, Weston LA (2003) The role of root exudates and allelochemicals in the rhizosphere. Plant Soil 256: 67-83.
5. Blum LK, Roberts MS, Garland JL, Mills AL (2004) Distribution of microbial communities associated with the dominant high marsh plants and sediments of the United States East Coast. Microb Ecol 48: 375-388.
6. Boetius A, Ferdelmann T, Lochte K (2000) Bacterial activity in sediments of the deep Arabian Sea in relation to vertical flux. Deep Sea Res II 47: 2835-2875.
7. Bouillon S, Moens T, Koedam N, Dahdouh-Guebas F, Baeyens W, Dehairs F (2004) Variability in the origin of carbon substrates for bacterial communities in mangrove sediments. FEMS Microbiol Ecol 49: 171-179.
8. Burke DJ, Hamerlynk EP, Halin D (2002) Interactions among plant species and microorganism in salt marsh sediments. Appl Environ Microbiol 68: 1157-1164.
9. Carvalho S (2004) Produtividade primária de algumas halófitas do sapal da Ria de Aveiro (Primary productivity of halophytes in salt marshes of the Ria de Aveiro). Degree Dissertation, University of Aveiro, Portugal.
10. Chappell KR, Goulder R (1994) Enzymes as river pollutants and the response of native epilithic extracellular enzyme activity. Environ Pollut 86: 161-169, Mmm.
11. Christian BW, Lind OT (2006) Key issues concerning Biolog use for aerobic and anaerobic freshwater bacterial community level physiological profiling. Internat Rev Hydrobiol 91: 257-268.
12. Christian BW, Lind OT (2007) Multiple carbon substrate utilization by bacteria at the sediment-water interface: seasonal patterns in a stratified eutrophic reservoir. Hydrobiologia 586: 43-56.
13. Christopher E, Bagwell CE, Dantler M, Bergholz PW, Lovell CR (2001) Host-specific ecotype diversity of rhizosphere diazotrophs of the perennial glasswort Salicornia virginica and selected salt marsh grasses. Aquat Microb Ecol 23: 293-300.
14. Créach V, Lucas F, Deleu C, Bertru G, Mariotti A (1999) Combination of biomolecular and stable isotope techniques to determine the origin of organic matter used by bacterial communities: application to sediment. J Microbiol Methods 38: 43-52.
15. Cregut M, Piutti S, Vong P-C, Slezack-Deschaumes S, Crovisier I, Benizri E (2009) Density, structure, anddiversity of the cultivable arylsulfatase-producing bacterial community in the rhizosphere of field-grown rape and barley. Soil Biol Biochem 41: 704-710.
16. Costa AL, Paixão SM, Caçador I, Carolino M (2007) CLPP and EEA profiles of microbial communities in salt marsh sediments. J Soil Sediment 7: 418-425.
17. a Ed. Coutinho, A. X. Pereira, Flora de Portugal. van J Cramer Verlag, Stuttgart.
18. Cunha MA, Almeida MA, Alcântara F (2003) Ectoenzymatic activity and glucose heterotrophic metabolism in a shallow estuary (Ria de Aveiro, Portugal): influence of bed sediments and salt marshes. Acta Oecol 24: S97-S107.
19. Cunha MA, Pedro P, Almeida MA, Silva MH (2005) Activity and growth efficiency of heterotrophic bacteria in a salt marsh (Ria de Aveiro, Portugal). Microb Res 160: 279-290.
20. Degens BP, Schipper LA, Sparling GP, Vojvodic-Vukovic M (2000) Decreases in organic C reserves in soils can reduce the catabolic diversity of soil microbial communities. Soil Biol Biochem 32: 189-196.
21. Doeglas DJ (1968) Grain-size indices, classification and environment. Sedimentology 10: 8-82.
22. Francoeur SN, Wetzel RG (2003) Regulation of periphytic leucine-aminopeptidase activity. Aquat Microbiol Ecol 31: 249-258.
23. Gallagher JL, Reimold RJ, Linthurst RA, Pfeiffer WJ (1980) Aerial production, mortality, and mineral accumulation-export dynamics in Spartina alterniflora and Juncus roemerianus plant stands in a Georgia salt marsh. Ecology 61(2): 303-312.
24. Garland JL, Mills AL (1991) Classification and characterization of heterotrophic microbial communities on the basis of patterns of community level sole carbon source utilization. Appl Environ Microbiol 57: 2351-2359.
25. Grayston SJ, Wang S, Campbell CD, Edwards AC (1998) Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biol Biochem 30: 369-378.
26. Götz M, Gomes NCM, Dratwinski A, Costa R, Berg G, Peixoto R, Mendonça-Hagler L, Smalla K (2006) Survival of gfp-tagged antagonistic bacteria in the rhizosphere of tomato plants and their effects on the indigenous bacterial community. FEMS Microbiol Ecol 56: 207-218.
27. Hines ME, Evans RS, Sharak Genthner BR, Willis SG, Friedman S, Rooney-Varga JN, Devereux R (1999) Molecular phylogenetic and biogeochemical studies of sulphate-reducing bacteria in the rhizosphere of Spartina alterniflora. Appl Environ Microbiol 65: 2209-2216.
28. Howes BL, Dacey JWH, Teal JM (1985) Annual carbon mineralization and below ground production of the Spartina alterniflora in a New England salt marsh. Ecology 66: 595-605.
29. Köster M, Dahlke S, Meyer-Reil LA (2005) Microbial colonization and activity in relation to organic carbon in sediments of hypertrophic coastal waters (Nordrügensche Bodden). Aquat Microb Ecol 39: 69-83.
30. Köster M, Wardenga R, Blume M (2008) Microscale investigations of microbial communities in coastal surficial sediments. Marine Ecol 29: 89-105.
31. Lalor BM, Cookson WR, Murphy DV (2007) Comparison of two methods that assess soil community level physiological profiles in a forest ecosystem. Soil Biol Biochem 39: 454-462.
32. Larcher W (1995) Physiological plant ecology. Springer Verlag, Berlin.
33. La Rocque JR, Bergholz PW, Bagwell CE, Lovell CR (2004) Influence of host-derived and abiotic environmental parameters on the composition of the diazotroph assemblage associated with roots of Juncus roemerianus. Antonie van Leeuwenhoek 86: 249-261.
34. Larsonneur C (1977) La cartographie des dépots meubles sur le plateau continental français: méthode mise au point et utilisée en Manche. J Rech oceanogr 2: 34-39.
35. Llobet-Brossa E, Rosselló-Mora R, Amann R (1998) Microbial community composition of wadden sea sediments as revealed by fluorescence in situ hybridization. Appl Environ Microbiol 64: 2691-2696.
36. Martinez J, Azam F (1993) Periplasmic aminopeptidase and alkaline phosphatase activities in a marine bacterium: implications for substrate processing in the sea. Mar Ecol Prog Ser 92: 89-97.
37. Mendonça A, Duarte AC, Santos EBH (2004) Spectroscopic properties of sedimentary humic acids from a salt marsh (Ria de Aveiro, Portugal): comparison of sediments colonized by Halimione portulacoides (L.) Aellen and non-vegetated sediments. Biogeochemistry-US 69: 159-174.
38. Meyer-Reil LA (1986) Measurement of hydrolytic activity and incorporation of dissolved organic substrates by microorganisms in marine sediments. Mar Ecol Prog Ser 31: 147-149.
39. Middelboe M, Glud RN (2003) Distribution of viruses and bacteria in relation to diagenetic activity in an estuarine sediment. Limnol Oceanogr 48: 1447-1456.
40. Odum WE (1988) Comparative ecology of tidal freshwater and salt marshes. Annu Rev Ecol Syst 19: 147-176.
41. Oshrain RL, Wiebe WJ (1979) Arylsulfatase activity in salt marsh soils. Appl Environ Microbiol 38: 337-340.
42. Pernthaler J, Gloeckner FO, Schoenhuber W, Amann R (2006) Fluorescence in situ hybridization with rRNA-targeted oligonucleotide probes. Fluorescence in situ hybridization. Methods Microbiol Mar Microbiol 30: 1-31.
43. Piceno YM, Lovell CR (2000) Stability in natural bacterial communities: I. Nutrient addition effects on rhizozphere diazotroph assemblage composition. Microb Ecol 39: 32-40.
44. Quintino V, Rodrigues AM, Gentil F (1989) Assessment of macrozoobenthic communities in the lagoon of Óbidos, western coast of Portugal. Sci Mar 53: 645-654.
45. Reboreda R, Caçador I (2007) Copper, zinc and lead speciation in salt marsh sediments colonised by Halimione portulacoides and Spartina maritima. Chemosphere 69: 1665-1661.
46. Reboreda R, Caçador I, Pedro S, Almeida PR (2008) Mobility of metals in salt marsh sediments colonised by Spartina maritima (Tagus estuary, Portugal). Hydrobiologia 606: 129-137.
47. Rejmánková E, Macek P (2008) Response of root and sediment phosphatase activity to increased nutrients and salinity. Biogeochemistry 90: 159-169.
48. Ryan PR, Delhaize E, Jones DL (2001) Function and mechanism of organic anion exudation from plant roots. Ann Rev Plant Physio 52: 527-560.
49. Santos L, Cunha A, Silva H, Caçador I, Dias JM, Almeida A (2006) Influence of salt marsh on bacterial activity in two estuaries with different hydrodynamic characteristics (Ria de Aveiro and Tagus Estuary). FEMS Microbiol Ecol 60: 429-441.
50. Sala MM, Arin L, Balagué V, Felipe J, Guadayol O, Vaqué D (2005) Functional diversity of bacterioplankton assemblages in wester Antarctic seawater during late spring. Mar Ecol Prog Ser 292: 13-21.
51. Sala MM, Terrado R, Lovejoy C, Unrein F, Perdrós-Alió C (2008) Metabolic diversity of heterotrophic bacterioplankton over winter and spring in the coastal Arctic Ocean. Environ Microbiol 10(4): 942-949.
52. Semenov AM, van Bruggen AHC, Zelenev VV (1999) Moving waves of bacterial populations and total organic carbon along roots of wheat. Microb Ecol 37: 116-128.
53. Silva H, Dias JM, Caçador I (2009) Is the salt marsh vegetation a determining factor inthe sedimentation processes? Hydrobiologia 621: 33-47.
54. Sinsabaugh RL (1994) Enzymatic analysis of microbial patterns and process. Biol Fert Soils 17: 69-74.
55. Söderberg KH, Probanza A, Jumpponem A, Bååth E (2004) The microbial community in the rhizosphere determined by community level physiological profiles (CLPP) and direct soil- and cfu-PLFA techniques. Appl Soil Ecol 25: 135-145.
56. Valiela I, Teal JT, Perssonm NY (1976) Production and dynamics of experimentally enriched salt marsh vegetation: below ground biomass. Limnol Oceanogr 21: 245-252.
57. Vernberg FJ (1993) Salt marsh processes: a review. Environ Toxicol Chem 12: 2167-2195.
58. Vrba J (1992) Seasonal extracellular enzyme activities in decomposition of polymeric organic matter in a reservoir. Arch Hydrobiol Beih 37: 33-42.
59. Yang CH, Crowley DE (2000) Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl Environ Microbiol 66: 345-351.
60. Yannic G, Baumel A, Ainouche M (2004) Uniformity of the nuclear and chloroplast genomes of Spartina maritima (Poaceae), a salt marsh species in decline along the Western European Coast. Heredity 93: 182-188.
61. Waisel Y (1972) Biology of halophytes. Academic Press, New York, p 395.